Wall clock time and date at job start Tue Mar 31 2020 17:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99739 * 2 1 4 4 H 1.48506 * 109.46899 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47151 * 120.00307 * 3 2 1 6 6 H 1.48497 * 109.47255 * 240.00224 * 3 2 1 7 7 C 1.38812 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00140 * 204.43198 * 7 2 1 9 9 N 1.36939 * 119.99787 * 24.42973 * 7 2 1 10 10 C 1.47148 * 120.98363 * 27.96397 * 9 7 2 11 11 C 1.53302 * 108.38182 * 129.44542 * 10 9 7 12 12 O 1.42965 * 109.22296 * 52.30182 * 11 10 9 13 13 C 1.42961 * 114.16578 * 297.41740 * 12 11 10 14 14 H 1.09005 * 109.51428 * 302.66217 * 13 12 11 15 15 C 1.52998 * 109.51168 * 182.50481 * 13 12 11 16 16 N 1.46497 * 109.47144 * 65.00430 * 15 13 12 17 17 C 1.34773 * 120.00322 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99677 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00184 * 179.97438 * 17 16 15 20 20 H 1.09000 * 110.66839 * 301.78044 * 19 17 16 21 21 C 1.54703 * 110.75089 * 64.99779 * 19 17 16 22 22 C 1.51641 * 101.92830 * 143.60779 * 21 19 17 23 23 C 1.37746 * 132.17324 * 164.58976 * 22 21 19 24 24 C 1.38353 * 119.97644 * 180.36076 * 23 22 21 25 25 C 1.38285 * 119.76633 * 0.02562 * 24 23 22 26 26 C 1.37929 * 120.35315 * 359.80122 * 25 24 23 27 27 C 1.38886 * 107.04046 * 344.61733 * 22 21 19 28 28 O 1.36128 * 111.23240 * 358.92644 * 27 22 21 29 29 C 1.47159 * 120.97744 * 207.68771 * 9 7 2 30 30 H 0.97007 * 119.99440 * 185.79099 * 1 2 3 31 31 H 1.09000 * 109.68090 * 249.16439 * 10 9 7 32 32 H 1.08994 * 109.68259 * 9.72359 * 10 9 7 33 33 H 1.08997 * 109.51201 * 172.22299 * 11 10 9 34 34 H 1.09001 * 109.50923 * 292.37701 * 11 10 9 35 35 H 1.08998 * 109.47199 * 185.00278 * 15 13 12 36 36 H 1.09000 * 109.47526 * 305.00080 * 15 13 12 37 37 H 0.96999 * 119.99737 * 359.97438 * 16 15 13 38 38 H 1.09000 * 110.93675 * 261.76230 * 21 19 17 39 39 H 1.08998 * 110.94346 * 25.40799 * 21 19 17 40 40 H 1.07997 * 120.01202 * 0.39050 * 23 22 21 41 41 H 1.08005 * 120.11303 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.81834 * 179.82898 * 25 24 23 43 43 H 1.08001 * 119.87916 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.67912 * 350.27817 * 29 9 7 45 45 H 1.08990 * 109.68212 * 110.83115 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0177 -1.2441 0.3863 9 7 1.4176 -2.3347 -0.4915 10 6 0.3798 -2.2565 -1.5318 11 6 0.7548 -3.2217 -2.6623 12 8 1.0055 -4.5170 -2.1116 13 6 2.1058 -4.5624 -1.2000 14 1 3.0071 -4.2064 -1.6991 15 6 2.3175 -6.0016 -0.7259 16 7 2.7206 -6.8354 -1.8610 17 6 2.9633 -8.1487 -1.6799 18 8 2.8484 -8.6401 -0.5771 19 6 3.3774 -9.0065 -2.8477 20 1 2.6242 -8.9743 -3.6349 21 6 4.7569 -8.5643 -3.3907 22 6 5.3804 -9.8907 -3.7798 23 6 6.4666 -10.2068 -4.5657 24 6 6.8160 -11.5310 -4.7617 25 6 6.0711 -12.5329 -4.1670 26 6 4.9852 -12.2185 -3.3768 27 6 4.6290 -10.8877 -3.1713 28 8 3.6205 -10.3591 -2.4253 29 6 1.8040 -3.6664 0.0014 30 1 -0.4850 -0.8359 0.0848 31 1 -0.5843 -2.5414 -1.1106 32 1 0.3253 -1.2396 -1.9203 33 1 -0.0663 -3.2825 -3.3765 34 1 1.6512 -2.8608 -3.1667 35 1 3.0975 -6.0224 0.0352 36 1 1.3885 -6.3858 -0.3046 37 1 2.8122 -6.4424 -2.7431 38 1 4.6439 -7.9170 -4.2603 39 1 5.3415 -8.0713 -2.6140 40 1 7.0456 -9.4212 -5.0282 41 1 7.6675 -11.7814 -5.3771 42 1 6.3415 -13.5671 -4.3217 43 1 4.4090 -13.0070 -2.9156 44 1 2.6921 -3.5825 0.6276 45 1 0.9858 -4.0955 0.5795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035436636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:38 Heat of formation + Delta-G solvation = -79.341650 kcal Electronic energy + Delta-G solvation = -27834.470324 eV Core-core repulsion = 23817.313467 eV Total energy + Delta-G solvation = -4017.156857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46372 -40.79674 -40.04262 -38.28480 -36.82740 -35.97398 -33.99453 -33.34876 -32.44421 -31.03301 -30.71580 -29.16220 -27.10082 -25.40607 -25.10986 -23.49273 -23.20604 -22.60781 -21.95278 -21.25517 -19.56402 -18.87411 -18.49322 -17.89172 -17.63873 -17.20459 -16.83619 -16.70706 -16.19258 -15.99303 -15.81095 -15.56189 -15.44498 -15.12986 -14.95199 -14.51951 -14.46378 -14.31649 -14.10977 -14.04043 -13.72539 -13.52355 -13.08259 -12.98675 -12.66687 -12.58054 -12.42915 -12.22544 -12.18528 -11.94237 -11.84532 -11.76974 -11.29656 -11.08371 -10.94899 -10.47544 -10.31291 -9.87053 -9.18013 -9.01159 -8.29934 -5.49474 0.29818 0.38681 1.30513 1.50250 1.58888 1.65272 1.84521 2.40965 2.59078 2.66692 2.76201 3.14431 3.22664 3.33280 3.37051 3.70498 3.84920 3.87474 3.94157 3.95534 4.12494 4.20791 4.30154 4.30961 4.36850 4.47072 4.51143 4.55954 4.57495 4.62122 4.67576 4.71695 4.73766 4.90325 4.99397 5.06723 5.15818 5.19017 5.35613 5.42375 5.53972 5.62297 5.75016 6.14138 6.15019 6.30519 6.34559 6.92348 6.99838 7.66687 8.10586 8.93637 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.002062 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.192523 B =13575.257065 C =13950.269434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.075 4.075 3 Si 1.118 2.882 4 H -0.294 1.294 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.359 4.359 8 H 0.057 0.943 9 N -0.619 5.619 10 C 0.120 3.880 11 C 0.060 3.940 12 O -0.386 6.386 13 C 0.082 3.918 14 H 0.075 0.925 15 C 0.142 3.858 16 N -0.698 5.698 17 C 0.518 3.482 18 O -0.571 6.571 19 C 0.066 3.934 20 H 0.141 0.859 21 C -0.092 4.092 22 C -0.184 4.184 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.085 4.085 26 C -0.153 4.153 27 C 0.069 3.931 28 O -0.309 6.309 29 C 0.116 3.884 30 H 0.253 0.747 31 H 0.005 0.995 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.130 0.870 44 H 0.069 0.931 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -20.866 -15.135 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.272 4.272 3 Si 0.942 3.058 4 H -0.220 1.220 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.075 0.925 9 N -0.345 5.345 10 C -0.006 4.006 11 C -0.018 4.018 12 O -0.305 6.305 13 C 0.023 3.977 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.351 5.351 17 C 0.304 3.696 18 O -0.450 6.450 19 C 0.006 3.994 20 H 0.158 0.842 21 C -0.129 4.129 22 C -0.185 4.185 23 C -0.090 4.090 24 C -0.164 4.164 25 C -0.103 4.103 26 C -0.172 4.172 27 C 0.025 3.975 28 O -0.223 6.223 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.155 0.845 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.148 0.852 44 H 0.088 0.912 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.061 -19.803 -14.256 27.677 hybrid contribution -0.401 -1.009 0.540 1.212 sum 12.661 -20.812 -13.717 27.957 Atomic orbital electron populations 1.70921 1.07624 1.29372 1.50281 1.27317 0.96584 1.05019 0.98245 0.82823 0.73789 0.71748 0.77476 1.21965 1.20263 1.20011 1.20239 0.97154 0.89116 1.42270 0.92507 1.44367 1.45796 1.01796 1.42529 1.21549 0.90254 0.98961 0.89850 1.23051 1.01463 0.82605 0.94648 1.87823 1.51531 1.30140 1.61002 1.22526 0.90038 0.93870 0.91311 0.90675 1.21208 1.00841 0.87369 0.88859 1.45582 1.68598 1.07475 1.13463 1.20474 0.76900 0.82695 0.89565 1.90739 1.52888 1.73731 1.27628 1.23305 1.01082 0.80480 0.94491 0.84158 1.21786 0.91612 0.96018 1.03439 1.20937 0.99625 0.94333 1.03578 1.20696 0.94341 0.98015 0.95956 1.21491 1.01399 0.91905 1.01640 1.21267 0.92883 1.01450 0.94666 1.20575 1.00997 0.92346 1.03235 1.20009 0.89274 0.95209 0.93035 1.86897 1.52157 1.27041 1.56234 1.21521 0.98716 0.85872 0.94862 0.93733 0.97681 0.92375 0.86733 0.92465 0.89291 0.91841 0.74269 0.84468 0.89044 0.83162 0.82471 0.82393 0.85173 0.91243 0.96601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 12.49 21.65 0.27 -56.22 16 2 C -0.08 -4.17 4.72 84.86 0.40 -3.77 16 3 Si 1.12 49.18 29.98 68.60 2.06 51.24 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.36 -19.46 9.54 84.03 0.80 -18.66 16 8 H 0.06 3.05 7.94 -2.91 -0.02 3.02 16 9 N -0.62 -30.26 2.90 -698.34 -2.03 -32.29 16 10 C 0.12 5.44 4.89 86.36 0.42 5.86 16 11 C 0.06 2.02 6.99 72.08 0.50 2.53 16 12 O -0.39 -12.59 10.33 -148.98 -1.54 -14.13 16 13 C 0.08 2.55 2.80 30.55 0.09 2.64 16 14 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 15 C 0.14 3.88 5.34 86.38 0.46 4.34 16 16 N -0.70 -15.49 5.49 -463.08 -2.54 -18.03 16 17 C 0.52 13.54 7.13 87.66 0.63 14.16 16 18 O -0.57 -20.89 16.57 15.20 0.25 -20.64 16 19 C 0.07 1.32 4.05 30.43 0.12 1.44 16 20 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 21 C -0.09 -1.34 6.63 30.73 0.20 -1.13 16 22 C -0.18 -3.20 6.27 -19.53 -0.12 -3.32 16 23 C -0.07 -0.92 10.03 22.18 0.22 -0.70 16 24 C -0.15 -1.58 10.07 22.31 0.22 -1.36 16 25 C -0.08 -1.05 10.02 22.21 0.22 -0.83 16 26 C -0.15 -2.78 10.06 22.45 0.23 -2.56 16 27 C 0.07 1.54 7.04 22.68 0.16 1.70 16 28 O -0.31 -8.39 10.39 -76.78 -0.80 -9.18 16 29 C 0.12 4.70 6.00 86.21 0.52 5.21 16 30 H 0.25 15.62 6.62 -92.70 -0.61 15.00 16 31 H 0.01 0.25 7.74 -2.39 -0.02 0.24 16 32 H 0.06 2.94 6.53 -2.39 -0.02 2.93 16 33 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.42 6.81 8.47 -92.71 -0.79 6.03 16 38 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.44 7.92 -2.39 -0.02 1.43 16 40 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 42 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 43 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.07 2.71 7.96 -2.39 -0.02 2.70 16 45 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 Total: -1.00 -77.10 371.57 1.13 -75.97 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.38 Total: 17.73 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.08 Total: 5.55 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.30 Total: -106.53 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.09 Total: -43.96 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.06 Total: 51.24 kcal Total: -77.10 1.13 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035436636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.369 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds