Wall clock time and date at job start Tue Mar 31 2020 17:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99397 * 2 1 4 4 H 1.48505 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47485 * 299.99933 * 3 2 1 6 6 H 1.48496 * 109.47544 * 60.00340 * 3 2 1 7 7 C 1.38810 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99973 * 196.91412 * 7 2 1 9 9 N 1.36942 * 119.99705 * 16.91558 * 7 2 1 10 10 C 1.47155 * 120.98349 * 26.26152 * 9 7 2 11 11 C 1.53289 * 108.38617 * 129.44059 * 10 9 7 12 12 O 1.42955 * 109.26695 * 52.27426 * 11 10 9 13 13 C 1.42963 * 114.17475 * 297.50334 * 12 11 10 14 14 H 1.09006 * 109.50953 * 302.55233 * 13 12 11 15 15 C 1.52993 * 109.51892 * 182.44602 * 13 12 11 16 16 N 1.46503 * 109.47300 * 65.09680 * 15 13 12 17 17 C 1.34775 * 120.00243 * 180.02562 * 16 15 13 18 18 O 1.21592 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.47533 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.39525 * 120.05328 * 0.02562 * 19 17 16 21 21 C 1.37781 * 120.18755 * 179.97438 * 20 19 17 22 22 C 1.38646 * 119.97384 * 359.91024 * 21 20 19 23 23 C 1.37654 * 120.32120 * 359.92934 * 22 21 20 24 24 C 1.38882 * 120.87424 * 0.34560 * 23 22 21 25 25 O 1.36099 * 111.41634 * 179.52534 * 24 23 22 26 26 C 1.43762 * 109.17789 * 18.35020 * 25 24 23 27 27 C 1.51674 * 132.14626 * 180.37029 * 23 22 21 28 28 C 1.47150 * 120.98243 * 206.23138 * 9 7 2 29 29 H 0.96994 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.67939 * 249.16627 * 10 9 7 31 31 H 1.08997 * 109.68035 * 9.67683 * 10 9 7 32 32 H 1.09002 * 109.51758 * 172.22627 * 11 10 9 33 33 H 1.09003 * 109.51587 * 292.32654 * 11 10 9 34 34 H 1.09008 * 109.46958 * 305.10092 * 15 13 12 35 35 H 1.09001 * 109.47125 * 185.10299 * 15 13 12 36 36 H 0.97003 * 119.99769 * 0.02562 * 16 15 13 37 37 H 1.08003 * 119.90761 * 359.97438 * 20 19 17 38 38 H 1.07998 * 120.01122 * 179.85645 * 21 20 19 39 39 H 1.08004 * 119.84091 * 179.97438 * 22 21 20 40 40 H 1.08997 * 110.75622 * 214.28283 * 26 25 24 41 41 H 1.09003 * 110.74853 * 91.10023 * 26 25 24 42 42 H 1.09006 * 110.94514 * 46.17104 * 27 23 22 43 43 H 1.09000 * 110.95032 * 282.46456 * 27 23 22 44 44 H 1.08996 * 109.68038 * 110.83135 * 28 9 7 45 45 H 1.09004 * 109.68045 * 350.29014 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0553 -1.2223 0.2716 9 7 1.3701 -2.3622 -0.3461 10 6 0.1980 -2.3446 -1.2357 11 6 0.4259 -3.3655 -2.3561 12 8 0.7673 -4.6289 -1.7808 13 6 1.9826 -4.6202 -1.0280 14 1 2.8024 -4.2863 -1.6640 15 6 2.2760 -6.0313 -0.5146 16 7 2.5329 -6.9205 -1.6502 17 6 2.8156 -8.2210 -1.4374 18 8 2.8570 -8.6563 -0.3028 19 6 3.0749 -9.1163 -2.5809 20 6 3.0282 -8.6178 -3.8833 21 6 3.2704 -9.4514 -4.9532 22 6 3.5633 -10.7892 -4.7367 23 6 3.6152 -11.2907 -3.4559 24 6 3.3696 -10.4736 -2.3600 25 8 3.4611 -11.1672 -1.1926 26 6 4.1880 -12.3859 -1.4230 27 6 3.9110 -12.6773 -2.9170 28 6 1.8343 -3.6634 0.1605 29 1 -0.4850 0.8400 0.0004 30 1 -0.6952 -2.6122 -0.6712 31 1 0.0771 -1.3496 -1.6639 32 1 -0.4849 -3.4683 -2.9460 33 1 1.2390 -3.0263 -2.9980 34 1 1.4177 -6.3990 0.0479 35 1 3.1520 -6.0072 0.1336 36 1 2.4995 -6.5733 -2.5554 37 1 2.8016 -7.5756 -4.0531 38 1 3.2313 -9.0630 -5.9602 39 1 3.7524 -11.4407 -5.5771 40 1 3.8035 -13.1896 -0.7951 41 1 5.2540 -12.2384 -1.2495 42 1 4.7900 -13.1039 -3.4004 43 1 3.0478 -13.3328 -3.0328 44 1 1.1059 -4.0639 0.8656 45 1 2.7974 -3.5419 0.6564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035527192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:34 Heat of formation + Delta-G solvation = -77.417193 kcal Electronic energy + Delta-G solvation = -28056.712178 eV Core-core repulsion = 24039.638772 eV Total energy + Delta-G solvation = -4017.073406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22185 -40.75484 -39.91386 -38.25728 -36.52788 -35.80059 -33.86323 -33.33222 -32.38476 -31.22983 -30.21373 -29.17674 -27.25626 -25.19291 -24.84325 -23.95221 -23.14031 -22.90252 -21.75570 -21.03771 -19.02926 -18.67912 -18.23683 -17.66968 -17.52266 -17.12892 -16.97766 -16.67332 -16.18899 -15.97346 -15.87217 -15.50349 -15.45293 -15.02500 -14.70675 -14.56415 -14.46846 -14.05745 -13.94264 -13.80090 -13.36247 -13.23142 -13.02877 -12.81719 -12.73669 -12.66892 -12.51864 -12.21668 -12.17669 -12.05902 -11.88435 -11.80724 -11.35723 -10.99725 -10.81462 -10.55781 -10.26102 -9.89161 -9.18319 -8.77186 -7.92328 -5.39965 -0.18491 0.29636 1.45763 1.47494 1.58401 1.82316 2.06629 2.30506 2.47501 2.74584 2.78993 3.22742 3.43190 3.46748 3.56807 3.74603 3.94064 3.97871 4.04074 4.14061 4.20979 4.22123 4.32247 4.43700 4.48740 4.50520 4.56856 4.60520 4.70254 4.75258 4.81682 4.86985 4.88583 4.97250 5.03829 5.15826 5.22925 5.31472 5.32923 5.39814 5.54613 5.60518 5.64156 6.12726 6.24318 6.31844 6.49757 7.04945 7.17527 7.72599 8.26467 9.13988 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.002220 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.665587 B =12607.906343 C =13007.526729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.082 3.918 14 H 0.073 0.927 15 C 0.141 3.859 16 N -0.707 5.707 17 C 0.551 3.449 18 O -0.578 6.578 19 C -0.187 4.187 20 C -0.054 4.054 21 C -0.149 4.149 22 C -0.038 4.038 23 C -0.193 4.193 24 C 0.135 3.865 25 O -0.318 6.318 26 C 0.032 3.968 27 C -0.099 4.099 28 C 0.116 3.884 29 H 0.252 0.748 30 H -0.003 1.003 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.413 0.587 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.016 0.984 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -24.823 -14.923 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.024 4.024 12 O -0.309 6.309 13 C 0.022 3.978 14 H 0.091 0.909 15 C 0.017 3.983 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.459 6.459 19 C -0.191 4.191 20 C -0.073 4.073 21 C -0.167 4.167 22 C -0.056 4.056 23 C -0.194 4.194 24 C 0.087 3.913 25 O -0.232 6.232 26 C -0.042 4.042 27 C -0.135 4.135 28 C -0.010 4.010 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.251 0.749 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.184 0.816 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.034 0.966 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.105 -25.086 -13.874 30.078 hybrid contribution -0.020 1.630 0.444 1.689 sum 9.085 -23.456 -13.430 28.515 Atomic orbital electron populations 1.70202 1.06758 1.26041 1.55228 1.25854 0.96125 1.01696 1.01016 0.85131 0.78594 0.79403 0.76836 1.18916 1.21293 1.22113 1.19586 0.93024 0.85487 1.41376 0.90934 1.44363 1.33717 1.01822 1.53814 1.21330 0.87855 0.98522 0.90651 1.23172 1.00888 0.83467 0.94833 1.87812 1.41849 1.32093 1.69184 1.22617 0.87560 0.93788 0.93836 0.90895 1.21188 1.01306 0.87003 0.88797 1.45695 1.70968 1.08393 1.10904 1.18576 0.76270 0.82236 0.88893 1.90783 1.53575 1.76289 1.25265 1.19348 1.14581 0.90682 0.94446 1.21381 0.94987 1.01289 0.89620 1.21425 1.01916 0.93231 1.00113 1.20970 0.93478 0.95839 0.95292 1.21214 1.08055 0.96422 0.93685 1.19937 0.93642 0.91411 0.86270 1.87031 1.71198 1.34436 1.30494 1.24257 0.97432 0.84731 0.97748 1.21878 1.05083 0.93007 0.93576 1.21591 0.98767 0.86351 0.94295 0.93909 0.98466 0.91270 0.87231 0.92746 0.92250 0.89515 0.74942 0.83050 0.81331 0.81644 0.85708 0.89694 0.86021 0.87756 0.96613 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.15 11.14 21.65 0.24 -54.90 16 2 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 3 Si 0.97 44.22 29.59 68.60 2.03 46.25 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.27 -14.46 9.65 84.03 0.81 -13.65 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -30.98 3.05 -697.56 -2.13 -33.11 16 10 C 0.14 6.86 5.45 86.35 0.47 7.33 16 11 C 0.05 1.98 6.98 72.08 0.50 2.48 16 12 O -0.39 -14.11 10.33 -148.98 -1.54 -15.65 16 13 C 0.08 2.80 2.81 30.69 0.09 2.88 16 14 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 15 C 0.14 4.48 5.34 86.38 0.46 4.94 16 16 N -0.71 -19.89 5.45 -466.26 -2.54 -22.43 16 17 C 0.55 17.81 7.76 86.70 0.67 18.48 16 18 O -0.58 -23.69 15.86 10.98 0.17 -23.52 16 19 C -0.19 -4.85 5.89 -19.93 -0.12 -4.97 16 20 C -0.05 -0.95 9.51 22.47 0.21 -0.73 16 21 C -0.15 -1.78 10.05 22.26 0.22 -1.55 16 22 C -0.04 -0.44 10.02 22.23 0.22 -0.21 16 23 C -0.19 -3.21 6.27 -19.54 -0.12 -3.33 16 24 C 0.13 3.44 6.74 23.01 0.15 3.60 16 25 O -0.32 -8.92 10.14 -79.69 -0.81 -9.73 16 26 C 0.03 0.49 8.00 72.57 0.58 1.07 16 27 C -0.10 -1.03 7.12 30.74 0.22 -0.81 16 28 C 0.12 4.92 6.02 86.35 0.52 5.44 16 29 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 3.68 6.14 -2.39 -0.01 3.66 16 32 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.41 9.33 6.48 -92.71 -0.60 8.73 16 37 H 0.15 2.00 6.37 -2.91 -0.02 1.99 16 38 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 2.90 7.96 -2.39 -0.02 2.88 16 Total: -1.00 -78.66 368.27 1.16 -77.50 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.41 Total: 17.06 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.32 Total: 18.54 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.43 Total: -110.44 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.17 Total: -48.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.66 1.16 -77.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035527192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.078 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds