Wall clock time and date at job start Tue Mar 31 2020 17:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48504 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00141 * 3 2 1 6 6 H 1.48501 * 109.47436 * 60.00342 * 3 2 1 7 7 C 1.38815 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99436 * 196.91899 * 7 2 1 9 9 N 1.36930 * 120.00039 * 16.91261 * 7 2 1 10 10 C 1.47154 * 120.98108 * 206.24257 * 9 7 2 11 11 C 1.53302 * 108.38164 * 230.51623 * 10 9 7 12 12 O 1.42955 * 109.26590 * 307.72171 * 11 10 9 13 13 C 1.42965 * 114.16840 * 62.50148 * 12 11 10 14 14 H 1.08994 * 109.51062 * 57.45178 * 13 12 11 15 15 C 1.52999 * 109.50916 * 177.54935 * 13 12 11 16 16 N 1.46495 * 109.47685 * 299.89705 * 15 13 12 17 17 C 1.34769 * 120.00641 * 179.97438 * 16 15 13 18 18 O 1.21590 * 119.99399 * 0.02562 * 17 16 15 19 19 C 1.47602 * 120.00605 * 180.02562 * 17 16 15 20 20 C 1.39758 * 120.26160 * 0.02562 * 19 17 16 21 21 C 1.37469 * 120.19719 * 179.59696 * 20 19 17 22 22 C 1.39587 * 120.43604 * 0.32116 * 21 20 19 23 23 C 1.39190 * 119.09848 * 0.19057 * 22 21 20 24 24 C 1.37303 * 120.93609 * 359.63282 * 23 22 21 25 25 C 1.51673 * 106.99434 * 179.44107 * 23 22 21 26 26 C 1.54704 * 101.89482 * 344.47646 * 25 23 22 27 27 O 1.36000 * 129.72345 * 180.61721 * 22 21 20 28 28 C 1.47150 * 120.97992 * 26.22717 * 9 7 2 29 29 H 0.97000 * 120.00082 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.68147 * 350.23426 * 10 9 7 31 31 H 1.08998 * 109.68333 * 110.75953 * 10 9 7 32 32 H 1.09002 * 109.51021 * 67.62473 * 11 10 9 33 33 H 1.09003 * 109.50893 * 187.77280 * 11 10 9 34 34 H 1.09000 * 109.46854 * 179.89795 * 15 13 12 35 35 H 1.08998 * 109.46946 * 59.90440 * 15 13 12 36 36 H 0.97010 * 119.99579 * 0.02562 * 16 15 13 37 37 H 1.07996 * 119.90095 * 359.87423 * 20 19 17 38 38 H 1.08003 * 119.78305 * 180.34829 * 21 20 19 39 39 H 1.08005 * 120.06900 * 180.30644 * 24 23 22 40 40 H 1.09006 * 110.94447 * 226.32737 * 25 23 22 41 41 H 1.09003 * 110.98037 * 102.63929 * 25 23 22 42 42 H 1.08998 * 110.74061 * 267.03905 * 26 25 23 43 43 H 1.08995 * 110.74480 * 143.71174 * 26 25 23 44 44 H 1.08994 * 109.68461 * 9.75451 * 28 9 7 45 45 H 1.09004 * 109.70923 * 249.21657 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2717 9 7 1.3700 -2.3622 -0.3460 10 6 1.8341 -3.6634 0.1609 11 6 1.9812 -4.6206 -1.0275 12 8 0.7655 -4.6293 -1.7796 13 6 0.4243 -3.3659 -2.3552 14 1 1.2371 -3.0271 -2.9976 15 6 -0.8547 -3.5099 -3.1823 16 7 -0.6377 -4.4880 -4.2512 17 6 -1.6340 -4.7793 -5.1107 18 8 -2.7130 -4.2300 -4.9992 19 6 -1.4154 -5.7651 -6.1872 20 6 -0.1776 -6.4002 -6.3201 21 6 0.0219 -7.3242 -7.3181 22 6 -1.0051 -7.6327 -8.2118 23 6 -2.2323 -6.9890 -8.0810 24 6 -2.4432 -6.0672 -7.0855 25 6 -3.1282 -7.5139 -9.1865 26 6 -2.1061 -8.1880 -10.1322 27 8 -1.0199 -8.5126 -9.2487 28 6 0.1974 -2.3444 -1.2349 29 1 -0.4850 0.8400 0.0004 30 1 2.7975 -3.5421 0.6560 31 1 1.1062 -4.0632 0.8669 32 1 2.8003 -4.2868 -1.6646 33 1 2.1901 -5.6259 -0.6616 34 1 -1.1152 -2.5460 -3.6194 35 1 -1.6670 -3.8487 -2.5392 36 1 0.2231 -4.9265 -4.3398 37 1 0.6232 -6.1676 -5.6338 38 1 0.9794 -7.8151 -7.4112 39 1 -3.4027 -5.5797 -6.9939 40 1 -3.6451 -6.6969 -9.6901 41 1 -3.8401 -8.2427 -8.7991 42 1 -1.7799 -7.4933 -10.9062 43 1 -2.5268 -9.0908 -10.5749 44 1 0.0770 -1.3497 -1.6639 45 1 -0.6960 -2.6114 -0.6703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035528231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:21 Heat of formation + Delta-G solvation = -57.267922 kcal Electronic energy + Delta-G solvation = -27851.677750 eV Core-core repulsion = 23835.478082 eV Total energy + Delta-G solvation = -4016.199668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48063 -39.75690 -38.49769 -37.19596 -34.86877 -34.34418 -33.10420 -31.50090 -31.17201 -30.31163 -29.52727 -27.39876 -25.76436 -23.94636 -23.38808 -23.18680 -22.15316 -21.65991 -20.42766 -19.60847 -17.89610 -17.70734 -17.10153 -16.72686 -16.43391 -16.01242 -15.69281 -15.13673 -14.73640 -14.62506 -14.40083 -14.30880 -13.97155 -13.77853 -13.53676 -13.38420 -13.26213 -13.01877 -12.96521 -12.78509 -12.64707 -12.21407 -12.15633 -11.55011 -11.20505 -11.14351 -11.09186 -10.87841 -10.74236 -10.44000 -10.26967 -10.07918 -9.87722 -9.67136 -9.26938 -9.11052 -8.91815 -8.57905 -8.45320 -6.78625 -5.87116 -3.30875 0.62074 1.00702 2.68926 2.90322 3.24296 3.32851 3.40464 3.42348 3.65460 4.00987 4.18373 4.24524 4.41620 4.47953 4.56769 4.70771 4.85882 4.89273 4.98566 5.17370 5.24231 5.32363 5.33188 5.34323 5.51350 5.60407 5.67446 5.82761 5.85277 5.91199 5.99083 6.00476 6.05890 6.10247 6.15857 6.22543 6.34882 6.47796 6.63688 6.75772 6.76603 7.04280 7.45441 7.63874 7.68825 7.81183 8.29989 8.32353 9.08107 9.71089 10.28000 11.21003 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.002233 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.399696 B =12538.932436 C =13032.467801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.133 3.867 16 N -0.714 5.714 17 C 0.558 3.442 18 O -0.543 6.543 19 C -0.158 4.158 20 C -0.048 4.048 21 C -0.145 4.145 22 C 0.127 3.873 23 C -0.187 4.187 24 C -0.010 4.010 25 C -0.109 4.109 26 C 0.051 3.949 27 O -0.303 6.303 28 C 0.152 3.848 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.401 0.599 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -16.291 -18.504 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.365 5.365 17 C 0.345 3.655 18 O -0.422 6.422 19 C -0.161 4.161 20 C -0.067 4.067 21 C -0.163 4.163 22 C 0.081 3.919 23 C -0.188 4.188 24 C -0.029 4.029 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.216 6.216 28 C 0.026 3.974 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.729 -16.066 -18.450 24.616 hybrid contribution 0.877 0.939 0.080 1.288 sum -1.852 -15.127 -18.370 23.868 Atomic orbital electron populations 1.70026 1.05247 1.25692 1.53562 1.25070 0.95367 0.98534 1.00690 0.86194 0.79278 0.83715 0.77400 1.20234 1.21419 1.21604 1.19226 0.92662 0.84465 1.42192 0.91289 1.44054 1.33725 1.01376 1.52662 1.21605 0.98631 0.87558 0.93980 1.23008 0.86157 0.99622 0.94000 1.87778 1.42252 1.31482 1.69456 1.23159 0.94989 0.86482 0.95869 0.92576 1.21453 0.97815 0.92342 0.87483 1.45876 1.15430 1.44140 1.31039 1.18045 0.84189 0.81781 0.81460 1.90782 1.24970 1.52914 1.73539 1.19839 0.95318 1.01859 0.99088 1.21082 0.96203 0.93442 0.95938 1.20165 0.98165 1.01358 0.96652 1.19849 0.93929 0.88889 0.89203 1.20683 0.95180 1.02079 1.00837 1.20348 0.98977 0.93164 0.90379 1.21804 0.97799 1.01055 0.93963 1.23886 0.84958 1.01320 0.92233 1.86799 1.52035 1.48963 1.33827 1.21308 0.89498 0.97620 0.89005 0.93425 0.91971 0.95537 0.93855 0.89992 0.89804 0.90548 0.76368 0.84437 0.84692 0.84299 0.88723 0.88908 0.90253 0.87389 0.88543 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.64 3.05 -171.83 -0.52 -15.17 16 10 C 0.11 2.22 6.74 -3.53 -0.02 2.20 16 11 C 0.05 0.85 6.98 37.31 0.26 1.11 16 12 O -0.39 -7.08 10.14 -35.23 -0.36 -7.44 16 13 C 0.05 1.01 2.86 -26.58 -0.08 0.94 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 2.25 5.37 -4.04 -0.02 2.23 16 16 N -0.71 -10.33 5.40 -61.33 -0.33 -10.67 16 17 C 0.56 8.53 7.77 -12.44 -0.10 8.43 16 18 O -0.54 -10.16 16.36 5.29 0.09 -10.08 16 19 C -0.16 -1.96 5.88 -104.92 -0.62 -2.58 16 20 C -0.05 -0.49 9.52 -39.29 -0.37 -0.86 16 21 C -0.14 -1.40 10.05 -39.36 -0.40 -1.79 16 22 C 0.13 1.31 7.05 -38.72 -0.27 1.04 16 23 C -0.19 -1.87 6.26 -104.13 -0.65 -2.52 16 24 C -0.01 -0.11 9.58 -39.34 -0.38 -0.49 16 25 C -0.11 -0.72 7.12 -26.51 -0.19 -0.91 16 26 C 0.05 0.30 8.00 38.05 0.30 0.61 16 27 O -0.30 -2.90 11.09 -19.74 -0.22 -3.12 16 28 C 0.15 3.55 4.73 -3.53 -0.02 3.53 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.40 4.91 6.39 -40.82 -0.26 4.65 16 37 H 0.14 1.12 6.40 -52.49 -0.34 0.78 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.14 1.60 7.66 -52.48 -0.40 1.20 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -32.85 368.94 -9.33 -42.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.35 Total: 3.70 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.78 Total: 3.90 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.24 Total: -50.93 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.49 Total: -20.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.85 -9.33 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035528231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds