Wall clock time and date at job start Tue Mar 31 2020 17:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00285 * 2 1 4 4 H 1.48493 * 109.47220 * 179.72264 * 3 2 1 5 5 H 1.48496 * 109.46793 * 299.72554 * 3 2 1 6 6 H 1.48501 * 109.47003 * 59.71928 * 3 2 1 7 7 C 1.38817 * 119.99788 * 179.71852 * 2 1 3 8 8 H 1.08000 * 119.99457 * 196.41761 * 7 2 1 9 9 N 1.36938 * 120.00106 * 16.42248 * 7 2 1 10 10 C 1.47152 * 120.98223 * 26.73728 * 9 7 2 11 11 C 1.53291 * 108.38463 * 129.44250 * 10 9 7 12 12 O 1.42958 * 109.22268 * 52.30270 * 11 10 9 13 13 C 1.42965 * 114.16766 * 297.42018 * 12 11 10 14 14 H 1.08997 * 109.51063 * 302.65417 * 13 12 11 15 15 C 1.52994 * 109.51183 * 182.55476 * 13 12 11 16 16 N 1.46501 * 109.47195 * 65.00078 * 15 13 12 17 17 C 1.34783 * 119.99965 * 179.97438 * 16 15 13 18 18 O 1.21548 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.47841 * 119.99748 * 179.97438 * 17 16 15 20 20 C 1.39600 * 120.13537 * 359.72636 * 19 17 16 21 21 C 1.38000 * 119.89257 * 179.76397 * 20 19 17 22 22 C 1.38143 * 120.10913 * 0.50802 * 21 20 19 23 23 C 1.38756 * 120.27242 * 359.74808 * 22 21 20 24 24 C 1.37700 * 120.18483 * 359.97438 * 23 22 21 25 25 C 1.51113 * 107.25330 * 179.97438 * 23 22 21 26 26 O 1.43925 * 105.95714 * 342.28587 * 25 23 22 27 27 C 1.43928 * 104.97078 * 28.51476 * 26 25 23 28 28 C 1.47146 * 120.98166 * 206.45559 * 9 7 2 29 29 H 0.96997 * 119.99644 * 0.27731 * 1 2 3 30 30 H 1.08995 * 109.68009 * 249.17277 * 10 9 7 31 31 H 1.08998 * 109.67837 * 9.67797 * 10 9 7 32 32 H 1.09002 * 109.50962 * 172.22809 * 11 10 9 33 33 H 1.08996 * 109.51452 * 292.32644 * 11 10 9 34 34 H 1.09002 * 109.47062 * 184.99823 * 15 13 12 35 35 H 1.08995 * 109.47304 * 304.99761 * 15 13 12 36 36 H 0.97002 * 120.00114 * 359.97438 * 16 15 13 37 37 H 1.08001 * 120.05049 * 0.02562 * 20 19 17 38 38 H 1.08001 * 119.94736 * 180.25202 * 21 20 19 39 39 H 1.07997 * 120.09811 * 180.02562 * 24 23 22 40 40 H 1.09001 * 110.15199 * 101.40564 * 25 23 22 41 41 H 1.08989 * 110.15287 * 223.15855 * 25 23 22 42 42 H 1.09006 * 110.15149 * 212.35287 * 27 26 25 43 43 H 1.09003 * 110.15695 * 90.60268 * 27 26 25 44 44 H 1.09004 * 109.67983 * 350.28057 * 28 9 7 45 45 H 1.09002 * 109.68257 * 110.83074 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0068 5 1 1.8966 2.3934 -1.2158 6 1 1.8864 2.3994 1.2091 7 6 2.0102 -1.2022 0.0059 8 1 3.0572 -1.2199 0.2704 9 7 1.3674 -2.3656 -0.3237 10 6 0.1950 -2.3575 -1.2129 11 6 0.4203 -3.3941 -2.3195 12 8 0.7585 -4.6500 -1.7261 13 6 1.9747 -4.6338 -0.9749 14 1 2.7944 -4.3100 -1.6161 15 6 2.2658 -6.0387 -0.4435 16 7 2.5173 -6.9437 -1.5679 17 6 2.7982 -8.2417 -1.3383 18 8 2.8424 -8.6616 -0.1985 19 6 3.0515 -9.1550 -2.4730 20 6 2.9947 -8.6772 -3.7835 21 6 3.2367 -9.5330 -4.8386 22 6 3.5245 -10.8629 -4.6003 23 6 3.5771 -11.3452 -3.3003 24 6 3.3432 -10.5002 -2.2385 25 6 3.9096 -12.8170 -3.3814 26 8 3.6238 -13.2133 -4.7352 27 6 3.8234 -12.0239 -5.5207 28 6 1.8324 -3.6613 0.1960 29 1 -0.4849 0.8400 -0.0041 30 1 -0.6985 -2.6154 -0.6445 31 1 0.0761 -1.3681 -1.6545 32 1 -0.4910 -3.5028 -2.9075 33 1 1.2338 -3.0653 -2.9662 34 1 3.1437 -6.0084 0.2018 35 1 1.4083 -6.3966 0.1262 36 1 2.4817 -6.6086 -2.4775 37 1 2.7659 -7.6385 -3.9709 38 1 3.1971 -9.1634 -5.8526 39 1 3.3849 -10.8770 -1.2272 40 1 4.9645 -12.9766 -3.1581 41 1 3.2884 -13.3812 -2.6858 42 1 3.1399 -12.0156 -6.3698 43 1 4.8553 -11.9718 -5.8679 44 1 2.7977 -3.5351 0.6863 45 1 1.1065 -4.0529 0.9087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035538821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:32 Heat of formation + Delta-G solvation = -62.095147 kcal Electronic energy + Delta-G solvation = -27640.437940 eV Core-core repulsion = 23624.028948 eV Total energy + Delta-G solvation = -4016.408992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17489 -39.79063 -38.55651 -37.34720 -35.03993 -34.36410 -32.24063 -32.00067 -31.42357 -30.58708 -28.41242 -27.64630 -26.12999 -24.79034 -23.28437 -22.94217 -22.14040 -21.78471 -20.50702 -19.63227 -18.03310 -17.03659 -16.83769 -16.78556 -16.39741 -16.07729 -15.84931 -15.16916 -14.98996 -14.78477 -14.64698 -14.42224 -14.07124 -13.89283 -13.80300 -13.41151 -13.24824 -13.08866 -13.00257 -12.81810 -12.58464 -12.31135 -12.12916 -11.62854 -11.35033 -11.17201 -10.91911 -10.76417 -10.53138 -10.46058 -10.29973 -10.11961 -10.02679 -9.71382 -9.36257 -9.16669 -9.12982 -8.93867 -8.60217 -6.80810 -5.89370 -3.33666 0.39458 0.87839 2.57947 3.02370 3.30062 3.38188 3.40191 3.45836 3.48294 3.73607 4.14418 4.17024 4.38000 4.42068 4.58589 4.76214 4.85873 4.89942 4.94203 5.07239 5.08460 5.25158 5.28217 5.31512 5.41196 5.46202 5.53150 5.74006 5.76547 5.80658 5.82766 5.89670 5.97431 6.08553 6.19741 6.21958 6.30845 6.36302 6.42446 6.44498 6.69804 7.04498 7.43114 7.46722 7.66102 7.78663 8.11254 8.28224 9.06185 9.68671 10.25399 11.18876 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030164 B = 0.002019 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.024788 B =13864.294528 C =14167.746762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.713 5.713 17 C 0.556 3.444 18 O -0.539 6.539 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.035 4.035 25 C 0.092 3.908 26 O -0.360 6.360 27 C 0.089 3.911 28 C 0.121 3.879 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.402 0.598 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -20.989 -11.690 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.342 3.658 18 O -0.417 6.417 19 C -0.126 4.126 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.054 4.054 25 C 0.016 3.984 26 O -0.279 6.279 27 C 0.012 3.988 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.238 0.762 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.013 -21.466 -10.925 25.087 hybrid contribution 0.470 1.708 -0.347 1.805 sum 7.483 -19.758 -11.273 23.947 Atomic orbital electron populations 1.70040 1.05278 1.25606 1.53713 1.25070 0.95375 0.98515 1.00716 0.86174 0.79291 0.83643 0.77370 1.20195 1.21471 1.21587 1.19234 0.92494 0.84239 1.42504 0.91288 1.44053 1.33480 1.01156 1.53077 1.21444 0.89186 0.98129 0.89905 1.23329 0.99052 0.85050 0.96405 1.87793 1.41192 1.33095 1.68851 1.22727 0.87576 0.93821 0.95409 0.92352 1.21471 1.01911 0.87550 0.88422 1.45873 1.70723 1.08759 1.11051 1.18140 0.77138 0.82050 0.88427 1.90778 1.51881 1.76329 1.22750 1.19955 1.04821 0.94401 0.93444 1.21365 0.96884 1.00037 0.91405 1.20337 1.00281 0.91448 0.99688 1.21299 0.98823 0.95463 0.95637 1.20983 1.02338 0.97013 0.93951 1.20440 0.94654 0.91141 0.99135 1.21767 1.01359 0.90186 0.85089 1.89095 1.90739 1.30511 1.17543 1.21822 1.01900 0.81291 0.93748 1.21355 0.99038 0.87209 0.92978 0.93509 0.95306 0.88766 0.89999 0.94092 0.89853 0.90373 0.76204 0.84686 0.84856 0.84190 0.90188 0.88127 0.88124 0.90110 0.91718 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.15 55.49 0.62 -24.99 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.11 29.58 -169.99 -5.03 16.08 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.81 9.65 -15.06 -0.15 -6.96 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.53 3.05 -172.09 -0.53 -15.05 16 10 C 0.14 3.23 5.44 -3.54 -0.02 3.21 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -7.02 10.33 -35.23 -0.36 -7.38 16 13 C 0.06 1.08 2.80 -26.80 -0.07 1.01 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.90 5.35 -4.04 -0.02 1.88 16 16 N -0.71 -9.16 5.45 -61.25 -0.33 -9.49 16 17 C 0.56 7.63 7.77 -12.33 -0.10 7.53 16 18 O -0.54 -9.15 16.35 5.32 0.09 -9.06 16 19 C -0.12 -1.38 5.88 -104.94 -0.62 -1.99 16 20 C -0.08 -0.69 9.54 -39.16 -0.37 -1.07 16 21 C -0.10 -0.77 10.03 -39.70 -0.40 -1.16 16 22 C -0.11 -0.93 6.33 -104.25 -0.66 -1.59 16 23 C -0.14 -1.30 6.31 -104.42 -0.66 -1.96 16 24 C -0.03 -0.37 9.59 -39.26 -0.38 -0.74 16 25 C 0.09 0.69 7.63 36.21 0.28 0.97 16 26 O -0.36 -3.21 11.72 -35.23 -0.41 -3.62 16 27 C 0.09 0.60 7.63 36.22 0.28 0.88 16 28 C 0.12 2.46 6.00 -3.75 -0.02 2.44 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 4.38 6.51 -40.82 -0.27 4.12 16 37 H 0.14 0.96 6.40 -52.49 -0.34 0.62 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.64 8.14 -51.94 -0.42 0.22 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -32.52 369.31 -9.49 -42.01 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.36 Total: 2.54 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.74 Total: 3.40 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.24 Total: -49.54 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.69 Total: -20.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.52 -9.49 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035538821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.086 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds