Wall clock time and date at job start Tue Mar 31 2020 16:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99792 * 2 1 4 4 H 1.48511 * 109.46834 * 265.91398 * 3 2 1 5 5 H 1.48501 * 109.47026 * 25.90823 * 3 2 1 6 6 H 1.48493 * 109.47432 * 145.91412 * 3 2 1 7 7 C 1.38817 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99557 * 344.25852 * 7 2 1 9 9 N 1.36926 * 120.00183 * 164.25597 * 7 2 1 10 10 C 1.46887 * 120.49566 * 149.31755 * 9 7 2 11 11 C 1.53333 * 108.76766 * 124.37407 * 10 9 7 12 12 C 1.52666 * 109.16659 * 52.39284 * 11 10 9 13 13 C 1.53493 * 113.61417 * 74.09186 * 12 11 10 14 14 N 1.47665 * 85.98944 * 137.71379 * 13 12 11 15 15 C 1.34778 * 134.46111 * 155.70726 * 14 13 12 16 16 O 1.21276 * 120.00264 * 181.23275 * 15 14 13 17 17 C 1.50702 * 120.00042 * 1.23680 * 15 14 13 18 18 C 1.53002 * 115.54854 * 290.66973 * 17 15 14 19 19 F 1.39900 * 109.47398 * 74.85363 * 18 17 15 20 20 F 1.39897 * 109.47130 * 194.86079 * 18 17 15 21 21 F 1.39901 * 109.46920 * 314.85476 * 18 17 15 22 22 C 1.53001 * 117.50138 * 144.99170 * 17 15 14 23 23 C 1.52999 * 117.49771 * 76.33045 * 17 15 14 24 24 C 1.47658 * 91.08240 * 335.67650 * 14 13 12 25 25 C 1.52665 * 113.19963 * 302.56681 * 12 11 10 26 26 C 1.46896 * 120.49808 * 329.29679 * 9 7 2 27 27 H 0.96996 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58754 * 244.15574 * 10 9 7 29 29 H 1.08994 * 109.58942 * 4.58979 * 10 9 7 30 30 H 1.08998 * 109.52062 * 172.30192 * 11 10 9 31 31 H 1.08999 * 109.51734 * 292.48897 * 11 10 9 32 32 H 1.09003 * 113.78801 * 251.97847 * 13 12 11 33 33 H 1.08995 * 113.78804 * 23.44145 * 13 12 11 34 34 H 1.08996 * 117.49729 * 0.02562 * 22 17 15 35 35 H 1.08993 * 117.49470 * 145.02089 * 22 17 15 36 36 H 1.08998 * 117.50151 * 214.97838 * 23 17 15 37 37 H 1.09000 * 117.50259 * 359.97438 * 23 17 15 38 38 H 1.09007 * 113.79175 * 270.05668 * 24 14 13 39 39 H 1.09000 * 113.79593 * 138.58904 * 24 14 13 40 40 H 1.09000 * 109.52624 * 297.53554 * 25 12 11 41 41 H 1.09002 * 109.57157 * 177.38040 * 25 12 11 42 42 H 1.09002 * 109.58896 * 355.41847 * 26 9 7 43 43 H 1.09004 * 109.59067 * 115.70552 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5840 1.9966 -1.3966 5 1 1.4069 2.6761 0.6117 6 1 3.5018 1.4669 0.7846 7 6 2.0104 -1.2021 0.0005 8 1 1.5008 -2.1198 0.2547 9 7 3.3411 -1.2244 -0.3212 10 6 4.2351 -2.2268 0.2734 11 6 4.9339 -2.9955 -0.8544 12 6 5.5834 -1.9997 -1.8121 13 6 6.8533 -1.3454 -1.2506 14 7 7.4271 -1.5465 -2.5963 15 6 8.4105 -0.9533 -3.3015 16 8 8.6578 -1.3256 -4.4289 17 6 9.2031 0.1727 -2.6891 18 6 8.4377 1.4810 -2.4801 19 9 7.5748 1.3470 -1.3872 20 9 9.3444 2.5176 -2.2342 21 9 7.6941 1.7746 -3.6282 22 6 10.6861 0.2721 -3.0523 23 6 10.2695 -0.1947 -1.6553 24 6 6.4919 -2.6585 -2.8595 25 6 4.5922 -1.0014 -2.4051 26 6 3.8960 -0.2465 -1.2665 27 1 -0.4850 0.8400 -0.0004 28 1 4.9810 -1.7294 0.8933 29 1 3.6540 -2.9194 0.8822 30 1 5.6990 -3.6466 -0.4318 31 1 4.2014 -3.5955 -1.3944 32 1 6.7249 -0.2975 -0.9795 33 1 7.3422 -1.9310 -0.4722 34 1 11.0883 -0.4767 -3.7346 35 1 11.1164 1.2694 -3.1421 36 1 10.4261 0.4958 -0.8266 37 1 10.3975 -1.2507 -1.4177 38 1 6.8735 -3.6344 -2.5590 39 1 6.0762 -2.6545 -3.8671 40 1 3.8482 -1.5346 -2.9970 41 1 5.1235 -0.2929 -3.0405 42 1 3.0914 0.3664 -1.6727 43 1 4.6166 0.3900 -0.7529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050675201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:42 Heat of formation + Delta-G solvation = -90.021057 kcal Electronic energy + Delta-G solvation = -31107.279320 eV Core-core repulsion = 26547.802629 eV Total energy + Delta-G solvation = -4559.476691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.37713 -47.93514 -47.81878 -40.97280 -39.22311 -36.86576 -36.14440 -32.55627 -30.82014 -30.58049 -28.20626 -27.00912 -26.38305 -24.30945 -23.19075 -22.99991 -22.78902 -21.00765 -19.77014 -18.66253 -18.60087 -18.33878 -18.17962 -16.78379 -16.32552 -16.09070 -15.70362 -15.31900 -14.99039 -14.75170 -14.54868 -14.34390 -14.21917 -13.99947 -13.94653 -13.88933 -13.77094 -13.71312 -13.17056 -13.04974 -12.64963 -12.42991 -12.15487 -12.05962 -11.85995 -11.77740 -11.60092 -11.26832 -11.24367 -10.87148 -10.61846 -10.49907 -10.32400 -10.01702 -9.82463 -9.62111 -9.46583 -8.81160 -8.60830 -6.94929 -5.95442 -3.36598 1.96186 2.42549 2.50839 2.86053 3.30452 3.40554 3.47017 3.49123 3.68562 3.90563 3.92007 4.33375 4.35424 4.43255 4.50982 4.81715 4.89887 4.94279 5.01651 5.06941 5.28359 5.30099 5.32755 5.38855 5.48306 5.51491 5.59817 5.69784 5.81131 5.87194 5.99467 6.12500 6.25553 6.30581 6.41113 6.58934 6.64320 6.64756 6.87570 7.49768 7.85445 7.98355 8.33101 8.93139 9.70455 10.08581 11.20716 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.004606 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.061917 B = 6077.055387 C = 7065.173429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.150 3.850 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.091 3.909 14 N -0.629 5.629 15 C 0.577 3.423 16 O -0.526 6.526 17 C -0.235 4.235 18 C 0.498 3.502 19 F -0.167 7.167 20 F -0.176 7.176 21 F -0.170 7.170 22 C -0.116 4.116 23 C -0.129 4.129 24 C 0.114 3.886 25 C -0.109 4.109 26 C 0.123 3.877 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.015 -1.674 -2.821 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.329 5.329 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.076 4.076 13 C -0.031 4.031 14 N -0.363 5.363 15 C 0.364 3.636 16 O -0.403 6.403 17 C -0.240 4.240 18 C 0.443 3.557 19 F -0.148 7.148 20 F -0.157 7.157 21 F -0.152 7.152 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.007 4.007 25 C -0.148 4.148 26 C -0.002 4.002 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 22.098 -1.653 -3.508 22.435 hybrid contribution 0.243 1.301 -0.004 1.323 sum 22.340 -0.353 -3.513 22.618 Atomic orbital electron populations 1.69778 1.05707 1.26591 1.53412 1.25347 0.95236 0.97630 0.99170 0.86974 0.79551 0.84384 0.77284 1.21411 1.23233 1.19642 1.18917 0.82770 0.94253 1.42994 0.89724 1.44298 1.06178 1.34921 1.47453 1.20913 0.92626 0.91443 0.92626 1.21958 0.99464 0.96788 0.97775 1.21973 0.93509 0.96724 0.95405 1.23805 0.91061 1.03780 0.84413 1.49981 1.33295 1.34840 1.18149 1.18259 0.78499 0.81942 0.84924 1.90722 1.66752 1.64990 1.17789 1.22531 0.94152 0.94423 1.12893 1.19060 0.77717 0.84494 0.74424 1.93152 1.71189 1.95414 1.55063 1.93173 1.67128 1.61203 1.94243 1.93245 1.77748 1.94150 1.50011 1.23237 0.88548 1.05275 0.98271 1.23224 0.95598 1.04407 0.93379 1.23451 0.86288 0.90063 1.00917 1.21766 0.97025 0.97258 0.98782 1.21428 0.96771 0.92147 0.89862 0.92715 0.95916 0.91565 0.92209 0.91052 0.88305 0.89338 0.86073 0.86262 0.86450 0.86495 0.89455 0.89874 0.90861 0.92792 0.90545 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 2 C 0.03 0.72 5.30 -17.43 -0.09 0.62 16 3 Si 0.89 22.40 24.30 -169.99 -4.13 18.27 16 4 H -0.29 -7.01 6.36 56.52 0.36 -6.65 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.70 6.83 56.52 0.39 -6.31 16 7 C -0.26 -7.07 10.03 -15.06 -0.15 -7.23 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.60 -13.61 2.71 -172.21 -0.47 -14.08 16 10 C 0.15 2.66 6.39 -3.66 -0.02 2.64 16 11 C -0.12 -1.68 5.25 -26.73 -0.14 -1.82 16 12 C -0.08 -1.06 0.77 -154.43 -0.12 -1.18 16 13 C 0.09 1.16 7.15 -3.16 -0.02 1.13 16 14 N -0.63 -8.37 3.44 -180.20 -0.62 -8.99 16 15 C 0.58 8.16 6.91 -10.98 -0.08 8.09 16 16 O -0.53 -9.03 17.52 5.56 0.10 -8.93 16 17 C -0.24 -2.65 1.82 -155.66 -0.28 -2.93 16 18 C 0.50 6.30 3.11 37.16 0.12 6.41 16 19 F -0.17 -2.28 14.07 2.25 0.03 -2.25 16 20 F -0.18 -1.98 15.94 2.25 0.04 -1.95 16 21 F -0.17 -2.54 16.92 2.25 0.04 -2.50 16 22 C -0.12 -0.95 9.47 -26.69 -0.25 -1.21 16 23 C -0.13 -0.97 9.79 -26.69 -0.26 -1.23 16 24 C 0.11 1.43 7.96 -3.15 -0.03 1.40 16 25 C -0.11 -1.89 5.21 -26.73 -0.14 -2.03 16 26 C 0.12 2.61 4.05 -3.66 -0.01 2.60 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 30 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.39 4.31 -51.93 -0.22 1.17 16 33 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.12 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.12 0.81 7.39 -51.93 -0.38 0.43 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16 42 H 0.08 1.82 4.23 -51.93 -0.22 1.60 16 43 H 0.02 0.52 6.60 -51.93 -0.34 0.18 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -32.37 348.33 -6.30 -38.67 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.82 Total: -1.83 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.49 Total: 5.28 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.31 Total: -50.02 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.10 Total: -8.93 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.37 -6.30 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050675201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.348 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds