Wall clock time and date at job start Tue Mar 31 2020 16:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99792 * 2 1 4 4 H 1.48511 * 109.46834 * 265.91398 * 3 2 1 5 5 H 1.48501 * 109.47026 * 25.90823 * 3 2 1 6 6 H 1.48493 * 109.47432 * 145.91412 * 3 2 1 7 7 C 1.38817 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99557 * 344.25852 * 7 2 1 9 9 N 1.36926 * 120.00183 * 164.25597 * 7 2 1 10 10 C 1.46887 * 120.49566 * 149.31755 * 9 7 2 11 11 C 1.53333 * 108.76766 * 124.37407 * 10 9 7 12 12 C 1.52666 * 109.16659 * 52.39284 * 11 10 9 13 13 C 1.53493 * 113.61417 * 74.09186 * 12 11 10 14 14 N 1.47665 * 85.98944 * 137.71379 * 13 12 11 15 15 C 1.34778 * 134.46111 * 155.70726 * 14 13 12 16 16 O 1.21276 * 120.00264 * 181.23275 * 15 14 13 17 17 C 1.50702 * 120.00042 * 1.23680 * 15 14 13 18 18 C 1.53002 * 115.54854 * 290.66973 * 17 15 14 19 19 F 1.39900 * 109.47398 * 74.85363 * 18 17 15 20 20 F 1.39897 * 109.47130 * 194.86079 * 18 17 15 21 21 F 1.39901 * 109.46920 * 314.85476 * 18 17 15 22 22 C 1.53001 * 117.50138 * 144.99170 * 17 15 14 23 23 C 1.52999 * 117.49771 * 76.33045 * 17 15 14 24 24 C 1.47658 * 91.08240 * 335.67650 * 14 13 12 25 25 C 1.52665 * 113.19963 * 302.56681 * 12 11 10 26 26 C 1.46896 * 120.49808 * 329.29679 * 9 7 2 27 27 H 0.96996 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58754 * 244.15574 * 10 9 7 29 29 H 1.08994 * 109.58942 * 4.58979 * 10 9 7 30 30 H 1.08998 * 109.52062 * 172.30192 * 11 10 9 31 31 H 1.08999 * 109.51734 * 292.48897 * 11 10 9 32 32 H 1.09003 * 113.78801 * 251.97847 * 13 12 11 33 33 H 1.08995 * 113.78804 * 23.44145 * 13 12 11 34 34 H 1.08996 * 117.49729 * 0.02562 * 22 17 15 35 35 H 1.08993 * 117.49470 * 145.02089 * 22 17 15 36 36 H 1.08998 * 117.50151 * 214.97838 * 23 17 15 37 37 H 1.09000 * 117.50259 * 359.97438 * 23 17 15 38 38 H 1.09007 * 113.79175 * 270.05668 * 24 14 13 39 39 H 1.09000 * 113.79593 * 138.58904 * 24 14 13 40 40 H 1.09000 * 109.52624 * 297.53554 * 25 12 11 41 41 H 1.09002 * 109.57157 * 177.38040 * 25 12 11 42 42 H 1.09002 * 109.58896 * 355.41847 * 26 9 7 43 43 H 1.09004 * 109.59067 * 115.70552 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5840 1.9966 -1.3966 5 1 1.4069 2.6761 0.6117 6 1 3.5018 1.4669 0.7846 7 6 2.0104 -1.2021 0.0005 8 1 1.5008 -2.1198 0.2547 9 7 3.3411 -1.2244 -0.3212 10 6 4.2351 -2.2268 0.2734 11 6 4.9339 -2.9955 -0.8544 12 6 5.5834 -1.9997 -1.8121 13 6 6.8533 -1.3454 -1.2506 14 7 7.4271 -1.5465 -2.5963 15 6 8.4105 -0.9533 -3.3015 16 8 8.6578 -1.3256 -4.4289 17 6 9.2031 0.1727 -2.6891 18 6 8.4377 1.4810 -2.4801 19 9 7.5748 1.3470 -1.3872 20 9 9.3444 2.5176 -2.2342 21 9 7.6941 1.7746 -3.6282 22 6 10.6861 0.2721 -3.0523 23 6 10.2695 -0.1947 -1.6553 24 6 6.4919 -2.6585 -2.8595 25 6 4.5922 -1.0014 -2.4051 26 6 3.8960 -0.2465 -1.2665 27 1 -0.4850 0.8400 -0.0004 28 1 4.9810 -1.7294 0.8933 29 1 3.6540 -2.9194 0.8822 30 1 5.6990 -3.6466 -0.4318 31 1 4.2014 -3.5955 -1.3944 32 1 6.7249 -0.2975 -0.9795 33 1 7.3422 -1.9310 -0.4722 34 1 11.0883 -0.4767 -3.7346 35 1 11.1164 1.2694 -3.1421 36 1 10.4261 0.4958 -0.8266 37 1 10.3975 -1.2507 -1.4177 38 1 6.8735 -3.6344 -2.5590 39 1 6.0762 -2.6545 -3.8671 40 1 3.8482 -1.5346 -2.9970 41 1 5.1235 -0.2929 -3.0405 42 1 3.0914 0.3664 -1.6727 43 1 4.6166 0.3900 -0.7529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050675201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:41 Heat of formation + Delta-G solvation = -110.622963 kcal Electronic energy + Delta-G solvation = -31108.172685 eV Core-core repulsion = 26547.802629 eV Total energy + Delta-G solvation = -4560.370057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.34351 -48.86996 -48.84783 -42.04424 -40.26291 -37.93980 -37.47840 -34.36163 -32.43735 -32.03899 -29.36845 -28.08964 -27.37699 -25.94446 -24.50249 -24.04120 -23.65172 -22.46800 -20.77375 -19.80673 -19.61953 -19.50579 -19.14445 -18.41699 -17.48368 -17.29116 -16.97304 -16.68261 -15.94884 -15.90507 -15.72779 -15.48382 -15.31081 -15.24480 -15.13761 -15.04613 -14.94719 -14.90517 -14.58954 -14.28446 -14.11949 -13.70574 -13.43461 -13.31603 -13.15488 -12.89632 -12.65912 -12.58367 -12.21896 -12.09788 -12.05612 -11.96397 -11.65823 -11.52875 -11.42325 -11.26228 -10.86949 -10.65582 -9.82517 -8.84318 -8.15570 -5.50663 1.00313 1.28002 1.38052 1.46554 1.50443 1.63054 2.09889 2.40525 2.54857 2.75546 3.06689 3.09049 3.12773 3.30138 3.38532 3.51908 3.63785 3.75791 3.87619 4.07354 4.26654 4.34711 4.42874 4.46621 4.50756 4.56848 4.60014 4.68424 4.73501 4.75233 4.80912 4.87663 4.94881 4.99549 5.01937 5.17216 5.22624 5.28618 5.54764 5.92071 6.16393 6.48815 6.83506 6.95934 7.64957 8.06328 9.04686 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.004606 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.061917 B = 6077.055387 C = 7065.173429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.033 4.033 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.313 1.313 6 H -0.258 1.258 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.618 5.618 10 C 0.142 3.858 11 C -0.106 4.106 12 C -0.079 4.079 13 C 0.099 3.901 14 N -0.631 5.631 15 C 0.574 3.426 16 O -0.566 6.566 17 C -0.260 4.260 18 C 0.495 3.505 19 F -0.174 7.174 20 F -0.168 7.168 21 F -0.191 7.191 22 C -0.109 4.109 23 C -0.102 4.102 24 C 0.120 3.880 25 C -0.100 4.100 26 C 0.123 3.877 27 H 0.260 0.740 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.789 -2.497 -1.950 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.208 1.208 5 H -0.242 1.242 6 H -0.182 1.182 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.343 5.343 10 C 0.017 3.983 11 C -0.145 4.145 12 C -0.080 4.080 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.362 3.638 16 O -0.445 6.445 17 C -0.265 4.265 18 C 0.440 3.560 19 F -0.156 7.156 20 F -0.149 7.149 21 F -0.172 7.172 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.001 4.001 25 C -0.139 4.139 26 C -0.002 4.002 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 25.924 -2.496 -2.622 26.175 hybrid contribution -0.935 1.483 -0.286 1.776 sum 24.989 -1.013 -2.908 25.178 Atomic orbital electron populations 1.69911 1.07334 1.27018 1.56555 1.25931 0.95753 1.00741 1.00350 0.86043 0.78536 0.80578 0.77531 1.20805 1.24240 1.18234 1.18900 0.84908 0.92922 1.40394 0.92650 1.44438 1.05236 1.36214 1.48400 1.21183 0.92330 0.90592 0.94169 1.21830 1.00062 0.96467 0.96129 1.21858 0.93421 0.96393 0.96366 1.23885 0.89989 1.03545 0.84840 1.50056 1.32983 1.34845 1.18454 1.18656 0.78463 0.82222 0.84427 1.90697 1.68033 1.66418 1.19393 1.22472 0.94834 0.92749 1.16416 1.19299 0.77617 0.85431 0.73620 1.93135 1.71613 1.95506 1.55307 1.93182 1.66644 1.60993 1.94125 1.93203 1.78423 1.94402 1.51169 1.23397 0.86001 1.06164 0.99062 1.23465 0.91516 1.05775 0.93125 1.23490 0.85572 0.91287 0.99758 1.21574 0.97406 0.97692 0.97240 1.21353 0.95955 0.92136 0.90760 0.93108 0.93889 0.92197 0.87594 0.92081 0.89591 0.85595 0.86129 0.84921 0.84612 0.84975 0.86087 0.91067 0.92157 0.92940 0.93807 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.66 13.97 21.65 0.30 -60.36 16 2 C -0.03 -1.94 5.30 84.86 0.45 -1.49 16 3 Si 0.94 47.17 24.30 68.60 1.67 48.84 16 4 H -0.28 -13.60 6.36 99.48 0.63 -12.97 16 5 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.26 -12.16 6.83 99.48 0.68 -11.48 16 7 C -0.24 -13.32 10.03 84.04 0.84 -12.48 16 8 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.62 -27.36 2.71 -698.74 -1.90 -29.26 16 10 C 0.14 4.66 6.39 86.42 0.55 5.21 16 11 C -0.11 -2.55 5.25 30.60 0.16 -2.39 16 12 C -0.08 -1.99 0.77 -52.04 -0.04 -2.03 16 13 C 0.10 2.09 7.15 86.32 0.62 2.71 16 14 N -0.63 -14.82 3.44 -842.41 -2.90 -17.72 16 15 C 0.57 14.99 6.91 87.66 0.61 15.59 16 16 O -0.57 -18.76 17.52 -3.02 -0.05 -18.81 16 17 C -0.26 -5.16 1.82 -52.93 -0.10 -5.26 16 18 C 0.49 11.61 3.11 71.98 0.22 11.83 16 19 F -0.17 -4.39 14.07 44.97 0.63 -3.75 16 20 F -0.17 -3.41 15.94 44.97 0.72 -2.70 16 21 F -0.19 -5.58 16.92 44.97 0.76 -4.82 16 22 C -0.11 -1.47 9.47 30.62 0.29 -1.18 16 23 C -0.10 -1.11 9.79 30.62 0.30 -0.81 16 24 C 0.12 2.60 7.96 86.32 0.69 3.29 16 25 C -0.10 -3.37 5.21 30.59 0.16 -3.21 16 26 C 0.12 5.11 4.05 86.41 0.35 5.46 16 27 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.04 1.28 8.09 -2.39 -0.02 1.26 16 29 H 0.06 2.03 7.92 -2.39 -0.02 2.01 16 30 H 0.11 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.13 4.31 -2.39 -0.01 2.12 16 33 H 0.13 1.80 8.07 -2.39 -0.02 1.78 16 34 H 0.12 1.66 8.06 -2.39 -0.02 1.64 16 35 H 0.13 1.39 7.39 -2.39 -0.02 1.38 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.88 8.09 -2.38 -0.02 1.86 16 39 H 0.07 1.73 8.09 -2.39 -0.02 1.72 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.77 8.02 -2.39 -0.02 1.75 16 42 H 0.04 2.10 4.23 -2.39 -0.01 2.09 16 43 H 0.03 1.27 6.60 -2.38 -0.02 1.25 16 Total: -1.00 -73.78 348.33 5.27 -68.51 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.94 Total: 4.81 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.10 Total: 15.26 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.49 Total: -107.34 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 2.11 Total: -11.27 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.67 Total: 48.84 kcal Total: -73.78 5.27 -68.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050675201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.113 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds