Wall clock time and date at job start Tue Mar 31 2020 17:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00504 * 2 1 4 4 H 1.48499 * 109.47183 * 268.93553 * 3 2 1 5 5 H 1.48507 * 109.46700 * 28.93379 * 3 2 1 6 6 H 1.48504 * 109.47202 * 148.93209 * 3 2 1 7 7 C 1.38818 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99753 * 343.36193 * 7 2 1 9 9 N 1.36939 * 120.00143 * 163.35792 * 7 2 1 10 10 C 1.47148 * 120.98316 * 329.41761 * 9 7 2 11 11 C 1.53290 * 108.38691 * 230.55963 * 10 9 7 12 12 O 1.42969 * 109.22259 * 307.69944 * 11 10 9 13 13 C 1.42960 * 114.16455 * 62.57898 * 12 11 10 14 14 C 1.47152 * 120.97803 * 149.44323 * 9 7 2 15 15 H 1.08998 * 109.68244 * 249.20238 * 14 9 7 16 16 C 1.52995 * 109.68414 * 9.72013 * 14 9 7 17 17 N 1.46495 * 109.47342 * 299.24292 * 16 14 9 18 18 C 1.34770 * 120.00358 * 180.02562 * 17 16 14 19 19 O 1.21591 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.47537 * 120.00148 * 179.72118 * 18 17 16 21 21 C 1.39531 * 120.05157 * 0.02562 * 20 18 17 22 22 C 1.37783 * 120.18274 * 179.87591 * 21 20 18 23 23 C 1.38642 * 119.98146 * 0.32103 * 22 21 20 24 24 C 1.37661 * 120.31597 * 359.73395 * 23 22 21 25 25 C 1.38883 * 120.87752 * 0.28153 * 24 23 22 26 26 O 1.35851 * 111.32011 * 179.30210 * 25 24 23 27 27 C 1.43772 * 109.29005 * 18.83953 * 26 25 24 28 28 C 1.51667 * 132.13541 * 180.52553 * 24 23 22 29 29 H 0.97002 * 119.99609 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.67962 * 350.28378 * 10 9 7 31 31 H 1.08998 * 109.67744 * 110.79736 * 10 9 7 32 32 H 1.08996 * 109.51653 * 67.62221 * 11 10 9 33 33 H 1.09001 * 109.51180 * 187.72475 * 11 10 9 34 34 H 1.09004 * 109.51092 * 177.49992 * 13 12 11 35 35 H 1.08996 * 109.51077 * 57.34793 * 13 12 11 36 36 H 1.09000 * 109.47250 * 179.24313 * 16 14 9 37 37 H 1.09006 * 109.47399 * 59.24254 * 16 14 9 38 38 H 0.97001 * 119.99912 * 359.97438 * 17 16 14 39 39 H 1.07999 * 119.90549 * 0.08673 * 21 20 18 40 40 H 1.08009 * 120.00754 * 180.10731 * 22 21 20 41 41 H 1.07996 * 119.84623 * 179.71285 * 23 22 21 42 42 H 1.09011 * 110.74901 * 90.67286 * 27 26 25 43 43 H 1.08998 * 110.75627 * 214.02256 * 27 26 25 44 44 H 1.09009 * 110.94645 * 46.13470 * 28 24 23 45 45 H 1.09008 * 110.95196 * 282.43355 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5203 2.0333 -1.3998 5 1 1.4366 2.6590 0.6774 6 1 3.5364 1.4466 0.7225 7 6 2.0102 -1.2022 -0.0005 8 1 1.5041 -2.1180 0.2669 9 7 3.3366 -1.2269 -0.3402 10 6 3.8914 -0.2575 -1.2981 11 6 4.6790 -1.0276 -2.3641 12 8 5.6177 -1.8938 -1.7217 13 6 5.0192 -2.8985 -0.8994 14 6 4.2490 -2.2241 0.2416 15 1 4.9487 -1.7317 0.9169 16 6 3.4432 -3.2734 1.0101 17 7 2.7033 -2.6231 2.0944 18 6 1.9198 -3.3562 2.9099 19 8 1.8267 -4.5573 2.7454 20 6 1.1794 -2.7021 4.0057 21 6 1.2891 -1.3246 4.1984 22 6 0.5968 -0.7106 5.2193 23 6 -0.2062 -1.4632 6.0624 24 6 -0.3208 -2.8231 5.8820 25 6 0.3662 -3.4671 4.8611 26 8 0.1255 -4.8040 4.8705 27 6 -1.0713 -5.0659 5.6230 28 6 -1.1134 -3.8843 6.6209 29 1 -0.4850 0.8401 0.0004 30 1 3.0806 0.2974 -1.7701 31 1 4.5550 0.4335 -0.7783 32 1 3.9915 -1.6198 -2.9679 33 1 5.2110 -0.3232 -3.0035 34 1 5.7966 -3.5401 -0.4845 35 1 4.3328 -3.4974 -1.4979 36 1 4.1211 -4.0175 1.4282 37 1 2.7418 -3.7607 0.3328 38 1 2.7778 -1.6649 2.2259 39 1 1.9157 -0.7375 3.5434 40 1 0.6825 0.3562 5.3648 41 1 -0.7442 -0.9804 6.8648 42 1 -1.9464 -5.0540 4.9732 43 1 -0.9948 -6.0157 6.1521 44 1 -2.1384 -3.5559 6.7930 45 1 -0.6280 -4.1500 7.5601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051134390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:58 Heat of formation + Delta-G solvation = -63.826443 kcal Electronic energy + Delta-G solvation = -29614.393217 eV Core-core repulsion = 25597.909150 eV Total energy + Delta-G solvation = -4016.484067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21299 -40.83068 -39.93356 -38.23874 -37.03285 -35.34917 -33.91381 -33.47688 -32.56776 -31.21748 -30.17724 -29.22308 -27.16512 -25.23309 -24.95500 -24.03162 -23.29422 -22.94474 -21.59681 -21.10906 -19.08679 -18.44308 -18.09793 -17.71030 -17.60452 -17.18249 -17.05820 -16.75163 -16.32002 -16.05038 -15.90201 -15.61034 -15.52616 -15.23828 -14.81900 -14.46634 -14.42292 -14.06412 -13.94530 -13.84285 -13.50445 -13.42864 -13.11607 -12.83432 -12.80085 -12.67466 -12.34540 -12.31523 -12.20033 -12.03075 -11.79960 -11.54447 -11.37213 -11.11241 -10.83884 -10.50566 -10.08509 -9.77330 -9.16574 -8.85337 -8.09654 -5.50648 -0.14057 0.30057 1.32304 1.43423 1.51816 1.89104 2.27868 2.31414 2.43610 2.83071 2.86790 3.03262 3.23247 3.43654 3.60116 3.81438 3.90123 4.00326 4.09889 4.15607 4.19119 4.21402 4.27466 4.33599 4.39159 4.44173 4.47115 4.54958 4.59147 4.69379 4.70089 4.82251 4.88827 4.90648 4.92721 4.97856 5.16642 5.19314 5.29639 5.40125 5.55141 5.63593 5.87537 6.15578 6.18483 6.21862 6.64769 6.86024 7.30322 7.59112 7.99747 9.08041 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.004158 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.510476 B = 6732.074642 C = 7950.118948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.019 4.019 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.312 1.312 6 H -0.258 1.258 7 C -0.241 4.241 8 H 0.060 0.940 9 N -0.619 5.619 10 C 0.085 3.915 11 C 0.052 3.948 12 O -0.388 6.388 13 C 0.058 3.942 14 C 0.129 3.871 15 H 0.059 0.941 16 C 0.141 3.859 17 N -0.690 5.690 18 C 0.548 3.452 19 O -0.586 6.586 20 C -0.182 4.182 21 C -0.055 4.055 22 C -0.155 4.155 23 C -0.038 4.038 24 C -0.193 4.193 25 C 0.136 3.864 26 O -0.315 6.315 27 C 0.032 3.968 28 C -0.094 4.094 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.409 0.591 39 H 0.129 0.871 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.078 0.922 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -2.002 12.181 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.215 4.215 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.241 1.241 6 H -0.183 1.183 7 C -0.370 4.370 8 H 0.078 0.922 9 N -0.347 5.347 10 C -0.040 4.040 11 C -0.026 4.026 12 O -0.306 6.306 13 C -0.021 4.021 14 C 0.024 3.976 15 H 0.077 0.923 16 C 0.017 3.983 17 N -0.341 5.341 18 C 0.337 3.663 19 O -0.469 6.469 20 C -0.186 4.186 21 C -0.074 4.074 22 C -0.173 4.173 23 C -0.055 4.055 24 C -0.194 4.194 25 C 0.088 3.912 26 O -0.229 6.229 27 C -0.042 4.042 28 C -0.131 4.131 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.247 0.753 39 H 0.146 0.854 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.939 -2.945 11.914 12.620 hybrid contribution -0.477 1.299 -0.488 1.468 sum 2.461 -1.646 11.426 11.804 Atomic orbital electron populations 1.69947 1.07366 1.26974 1.55141 1.25828 0.95505 1.00297 0.99853 0.86087 0.78574 0.80756 0.77829 1.20604 1.24126 1.18271 1.18756 0.84042 0.93318 1.40909 0.92233 1.44548 1.05674 1.36288 1.48153 1.22135 0.97087 0.92919 0.91863 1.23043 0.92215 0.93345 0.93973 1.87841 1.33393 1.45642 1.63764 1.22986 0.97969 0.89745 0.91363 1.21621 0.91549 0.89991 0.94468 0.92333 1.21135 0.94236 0.94739 0.88206 1.45826 1.46003 1.12014 1.30216 1.18462 0.79249 0.86299 0.82329 1.90700 1.66133 1.15795 1.74307 1.19381 1.06202 0.94236 0.98762 1.21229 0.97776 0.91301 0.97094 1.21338 0.98474 1.01688 0.95808 1.20887 0.95385 0.90881 0.98393 1.21256 1.03778 0.96380 0.97951 1.19788 0.94275 0.83912 0.93213 1.86936 1.44024 1.19671 1.72237 1.24297 0.85584 1.01399 0.92907 1.21866 1.02120 0.90514 0.98558 0.93062 0.91761 0.94153 0.93474 0.86464 0.85764 0.93439 0.89861 0.94064 0.75295 0.85354 0.82241 0.81220 0.90394 0.84837 0.86172 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.48 13.97 21.65 0.30 -56.17 16 2 C -0.02 -1.02 5.29 84.86 0.45 -0.57 16 3 Si 0.94 42.89 24.28 68.60 1.67 44.56 16 4 H -0.28 -12.29 6.54 99.48 0.65 -11.64 16 5 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.26 -11.14 6.64 99.48 0.66 -10.48 16 7 C -0.24 -12.51 7.54 84.03 0.63 -11.88 16 8 H 0.06 3.54 5.98 -2.91 -0.02 3.53 16 9 N -0.62 -26.94 2.78 -673.75 -1.87 -28.82 16 10 C 0.08 3.35 4.38 86.35 0.38 3.73 16 11 C 0.05 1.71 6.98 72.08 0.50 2.22 16 12 O -0.39 -12.75 10.74 -148.98 -1.60 -14.35 16 13 C 0.06 1.80 6.29 72.08 0.45 2.25 16 14 C 0.13 4.70 3.21 44.97 0.14 4.85 16 15 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.14 5.46 4.44 86.38 0.38 5.84 16 17 N -0.69 -28.83 3.71 -466.29 -1.73 -30.56 16 18 C 0.55 24.76 7.76 86.70 0.67 25.43 16 19 O -0.59 -29.88 15.87 10.91 0.17 -29.71 16 20 C -0.18 -7.28 5.89 -19.93 -0.12 -7.39 16 21 C -0.06 -1.90 9.51 22.47 0.21 -1.68 16 22 C -0.16 -4.12 10.05 22.26 0.22 -3.90 16 23 C -0.04 -0.85 10.02 22.23 0.22 -0.63 16 24 C -0.19 -5.11 6.27 -19.54 -0.12 -5.23 16 25 C 0.14 4.93 6.73 23.01 0.15 5.09 16 26 O -0.32 -11.49 10.12 -76.97 -0.78 -12.27 16 27 C 0.03 0.72 8.01 72.56 0.58 1.30 16 28 C -0.09 -1.66 7.12 30.74 0.22 -1.44 16 29 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.06 2.77 4.88 -2.39 -0.01 2.76 16 31 H 0.04 1.56 6.81 -2.39 -0.02 1.55 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.12 3.01 8.14 -2.38 -0.02 3.00 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.04 1.83 7.56 -2.38 -0.02 1.81 16 38 H 0.41 16.92 5.34 -92.71 -0.50 16.42 16 39 H 0.13 4.47 6.37 -2.91 -0.02 4.45 16 40 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 43 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -76.20 354.05 1.58 -74.62 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.43 Total: 34.73 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 4.99 Total: 17.98 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.30 Total: -115.55 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.21 Total: -56.33 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Total: -76.20 1.58 -74.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051134390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.795 kcal (2) G-P(sol) polarization free energy of solvation -76.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds