Wall clock time and date at job start Tue Mar 31 2020 17:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46858 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47388 * 240.00082 * 3 2 1 6 6 H 1.48501 * 109.46953 * 119.99885 * 3 2 1 7 7 C 1.38812 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99561 * 151.96877 * 7 2 1 9 9 N 1.36934 * 120.00404 * 331.97362 * 7 2 1 10 10 C 1.47421 * 125.64568 * 343.18775 * 9 7 2 11 11 C 1.54910 * 104.83090 * 204.09223 * 10 9 7 12 12 H 1.09001 * 111.00589 * 81.10302 * 11 10 9 13 13 O 1.42902 * 111.00509 * 204.91819 * 11 10 9 14 14 C 1.55158 * 101.58302 * 322.99048 * 11 10 9 15 15 H 1.09002 * 110.72059 * 277.13704 * 14 11 10 16 16 N 1.46498 * 110.72404 * 154.04061 * 14 11 10 17 17 C 1.34770 * 119.99990 * 154.99866 * 16 14 11 18 18 O 1.21283 * 120.00276 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99899 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47232 * 180.02562 * 19 17 16 21 21 H 1.09005 * 110.66943 * 54.30001 * 20 19 17 22 22 C 1.54704 * 110.75139 * 177.51493 * 20 19 17 23 23 C 1.51646 * 101.93074 * 143.60833 * 22 20 19 24 24 C 1.37739 * 132.18378 * 164.59636 * 23 22 20 25 25 C 1.38356 * 119.97964 * 180.35736 * 24 23 22 26 26 C 1.38285 * 119.76906 * 0.03824 * 25 24 23 27 27 C 1.37930 * 120.34795 * 359.79341 * 26 25 24 28 28 C 1.38885 * 107.03501 * 344.62707 * 23 22 20 29 29 O 1.36379 * 111.32475 * 359.06836 * 28 23 22 30 30 C 1.47021 * 125.64867 * 162.87654 * 9 7 2 31 31 H 0.97004 * 120.00411 * 173.95914 * 1 2 3 32 32 H 1.09000 * 110.37006 * 322.92870 * 10 9 7 33 33 H 1.09005 * 110.36937 * 85.25438 * 10 9 7 34 34 H 0.96703 * 114.00038 * 298.54291 * 13 11 10 35 35 H 0.97003 * 119.99561 * 335.00745 * 16 14 11 36 36 H 1.08996 * 109.47413 * 300.00509 * 19 17 16 37 37 H 1.09002 * 109.46982 * 60.00074 * 19 17 16 38 38 H 1.09001 * 110.94359 * 261.76659 * 22 20 19 39 39 H 1.09001 * 110.93627 * 25.41643 * 22 20 19 40 40 H 1.08004 * 120.01314 * 0.36787 * 24 23 22 41 41 H 1.08002 * 120.11511 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.82458 * 179.80498 * 26 25 24 43 43 H 1.08001 * 119.87704 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.88500 * 298.39913 * 30 9 7 45 45 H 1.08999 * 109.87960 * 59.56226 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9952 -1.2572 -0.4390 9 7 1.4460 -2.3183 0.5582 10 6 0.2981 -2.3299 1.4832 11 6 0.4419 -3.6524 2.2770 12 1 1.1616 -3.5447 3.0885 13 8 -0.8240 -4.0919 2.7736 14 6 0.9751 -4.6156 1.1837 15 1 0.1549 -5.0101 0.5839 16 7 1.7463 -5.7064 1.7851 17 6 1.8679 -6.8822 1.1379 18 8 1.3394 -7.0373 0.0574 19 6 2.6607 -8.0045 1.7569 20 6 2.6417 -9.2171 0.8242 21 1 2.9871 -8.9415 -0.1723 22 6 3.4996 -10.3672 1.4028 23 6 2.7010 -11.5900 0.9946 24 6 3.0201 -12.9290 0.9454 25 6 2.0794 -13.8486 0.5170 26 6 0.8209 -13.4180 0.1389 27 6 0.4981 -12.0780 0.1907 28 6 1.4381 -11.1462 0.6245 29 8 1.3263 -9.7944 0.7657 30 6 1.8806 -3.7039 0.3287 31 1 -0.4851 -0.8354 -0.0884 32 1 0.3460 -1.4753 2.1580 33 1 -0.6385 -2.3220 0.9256 34 1 -1.2423 -3.4725 3.3873 35 1 2.1692 -5.5823 2.6492 36 1 3.6900 -7.6806 1.9103 37 1 2.2185 -8.2760 2.7155 38 1 4.4908 -10.3801 0.9494 39 1 3.5707 -10.2921 2.4879 40 1 4.0044 -13.2610 1.2412 41 1 2.3271 -14.8991 0.4780 42 1 0.0868 -14.1347 -0.1986 43 1 -0.4873 -11.7501 -0.1061 44 1 1.7737 -3.9561 -0.7263 45 1 2.9194 -3.8224 0.6369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077047757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:33 Heat of formation + Delta-G solvation = -62.037343 kcal Electronic energy + Delta-G solvation = -27880.036464 eV Core-core repulsion = 23863.629978 eV Total energy + Delta-G solvation = -4016.406486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40241 -39.72816 -38.14781 -37.49610 -35.30293 -34.18617 -33.43709 -32.00665 -31.36881 -30.24630 -28.51739 -27.73348 -26.69875 -24.27163 -22.87344 -22.27121 -21.90324 -20.82157 -20.51708 -20.05939 -17.81440 -17.71049 -17.30849 -16.99273 -16.90235 -15.99115 -15.83191 -15.33502 -15.03254 -14.42726 -14.24151 -14.18280 -13.75478 -13.69279 -13.58207 -13.41285 -13.29999 -13.10012 -12.71012 -12.62031 -12.23658 -12.20720 -12.02284 -11.86591 -11.63030 -11.46742 -11.11529 -10.95853 -10.77859 -10.61919 -10.14846 -10.05997 -9.98399 -9.70287 -9.45924 -9.16685 -8.87018 -8.46586 -8.35221 -7.04134 -6.16107 -3.22730 1.01718 1.13565 2.73059 3.03169 3.16879 3.46658 3.47114 3.49814 3.68435 4.06077 4.21922 4.31393 4.52576 4.57438 4.63801 4.71276 4.79538 4.89175 5.00976 5.04264 5.14681 5.17007 5.20034 5.27097 5.34736 5.41454 5.48094 5.53047 5.56105 5.61321 5.79827 5.92527 5.95052 6.05855 6.16075 6.21147 6.37122 6.39625 6.55961 6.68947 6.81192 6.86319 7.01723 7.60949 7.69252 7.89520 8.34438 8.40922 8.93293 9.73264 10.25100 11.15791 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.002112 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.371777 B =13253.581457 C =13573.522678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.068 0.932 9 N -0.598 5.598 10 C 0.119 3.881 11 C 0.077 3.923 12 H 0.066 0.934 13 O -0.562 6.562 14 C 0.143 3.857 15 H 0.103 0.897 16 N -0.716 5.716 17 C 0.513 3.487 18 O -0.528 6.528 19 C -0.139 4.139 20 C 0.099 3.901 21 H 0.097 0.903 22 C -0.106 4.106 23 C -0.179 4.179 24 C -0.071 4.071 25 C -0.155 4.155 26 C -0.085 4.085 27 C -0.141 4.141 28 C 0.112 3.888 29 O -0.285 6.285 30 C 0.129 3.871 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.378 0.622 35 H 0.398 0.602 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.034 0.966 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -24.449 7.859 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.227 4.227 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.086 0.914 9 N -0.327 5.327 10 C -0.007 4.007 11 C 0.016 3.984 12 H 0.084 0.916 13 O -0.367 6.367 14 C 0.038 3.962 15 H 0.121 0.879 16 N -0.367 5.367 17 C 0.298 3.702 18 O -0.403 6.403 19 C -0.179 4.179 20 C 0.043 3.957 21 H 0.115 0.885 22 C -0.143 4.143 23 C -0.180 4.180 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.103 4.103 27 C -0.159 4.159 28 C 0.066 3.934 29 O -0.199 6.199 30 C 0.002 3.998 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.225 0.775 35 H 0.232 0.768 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.052 0.948 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.101 -23.180 6.720 24.893 hybrid contribution 0.438 -1.094 0.649 1.345 sum 6.540 -24.274 7.369 26.197 Atomic orbital electron populations 1.70793 1.06632 1.30287 1.47769 1.25825 0.96445 1.01185 0.99270 0.83504 0.74793 0.75910 0.76224 1.21022 1.21903 1.22075 1.19751 0.99645 0.87697 1.39551 0.91437 1.44380 1.36518 1.00648 1.51107 1.22168 0.92383 0.93912 0.92260 1.23369 0.84945 0.95218 0.94845 0.91604 1.86468 1.34888 1.49017 1.66329 1.21960 0.94188 0.85950 0.94131 0.87948 1.45910 1.54355 1.13178 1.23277 1.20360 0.81111 0.83050 0.85651 1.90756 1.47019 1.81527 1.21009 1.21847 1.02621 0.93084 1.00381 1.23063 0.80648 0.92051 0.99970 0.88542 1.21868 0.99416 0.90660 1.02341 1.20777 0.96141 0.95253 1.05811 1.20293 0.99493 0.90831 0.98248 1.21012 0.93806 0.99448 1.03044 1.20882 0.96777 0.94431 0.98212 1.20338 0.99839 0.91681 1.04074 1.19740 0.94504 0.84354 0.94769 1.87085 1.29340 1.15647 1.87804 1.21684 0.95847 0.85236 0.96990 0.91947 0.92439 0.94337 0.77487 0.76814 0.86641 0.87718 0.88771 0.88926 0.85899 0.85607 0.85246 0.85367 0.94757 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 12.93 55.49 0.72 -26.78 16 2 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 3 Si 1.07 25.04 30.00 -169.99 -5.10 19.94 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.34 -9.56 10.02 -15.06 -0.15 -9.71 16 8 H 0.07 1.90 7.97 -52.48 -0.42 1.48 16 9 N -0.60 -15.19 3.29 -170.07 -0.56 -15.75 16 10 C 0.12 2.72 5.03 -2.53 -0.01 2.70 16 11 C 0.08 1.37 4.06 -24.58 -0.10 1.27 16 12 H 0.07 1.05 8.01 -51.93 -0.42 0.64 16 13 O -0.56 -9.27 13.47 -35.23 -0.47 -9.74 16 14 C 0.14 2.66 3.04 -66.09 -0.20 2.46 16 15 H 0.10 2.19 7.55 -51.93 -0.39 1.80 16 16 N -0.72 -10.36 5.12 -52.02 -0.27 -10.63 16 17 C 0.51 7.60 7.76 -10.99 -0.09 7.52 16 18 O -0.53 -10.30 15.27 -2.05 -0.03 -10.33 16 19 C -0.14 -1.34 5.39 -27.88 -0.15 -1.49 16 20 C 0.10 1.09 3.05 -25.84 -0.08 1.02 16 21 H 0.10 1.15 7.97 -51.93 -0.41 0.74 16 22 C -0.11 -0.86 6.65 -26.52 -0.18 -1.03 16 23 C -0.18 -1.82 6.27 -104.10 -0.65 -2.47 16 24 C -0.07 -0.60 10.03 -39.72 -0.40 -1.00 16 25 C -0.15 -1.23 10.07 -39.52 -0.40 -1.63 16 26 C -0.08 -0.73 10.02 -39.68 -0.40 -1.13 16 27 C -0.14 -1.54 10.06 -39.30 -0.40 -1.93 16 28 C 0.11 1.39 7.04 -38.95 -0.27 1.12 16 29 O -0.29 -4.07 10.38 -28.56 -0.30 -4.37 16 30 C 0.13 2.81 7.01 -3.06 -0.02 2.79 16 31 H 0.27 8.18 6.06 -40.82 -0.25 7.93 16 32 H 0.06 1.38 7.95 -51.93 -0.41 0.96 16 33 H 0.04 0.97 6.81 -51.93 -0.35 0.61 16 34 H 0.38 4.62 9.11 45.56 0.42 5.04 16 35 H 0.40 4.42 8.57 -40.82 -0.35 4.07 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.60 7.92 -51.93 -0.41 0.19 16 40 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -36.73 373.11 -9.56 -46.29 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.59 Total: 8.06 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.58 Total: -2.32 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.11 Total: -53.15 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.80 Total: -24.45 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.73 -9.56 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077047757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.747 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds