Wall clock time and date at job start Tue Mar 31 2020 17:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00123 * 2 1 4 4 H 1.48495 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46861 * 299.99625 * 3 2 1 6 6 H 1.48500 * 109.46786 * 59.99714 * 3 2 1 7 7 C 1.38818 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64785 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.27186 * 178.89416 * 10 9 7 12 12 H 1.09001 * 110.72034 * 96.16863 * 11 10 9 13 13 O 1.42904 * 110.87518 * 219.37335 * 11 10 9 14 14 C 1.55161 * 102.94310 * 337.81001 * 11 10 9 15 15 H 1.09001 * 110.99802 * 277.38630 * 14 11 10 16 16 N 1.46497 * 111.00422 * 153.57374 * 14 11 10 17 17 C 1.34777 * 119.99525 * 154.99667 * 16 14 11 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 H 1.09001 * 109.67806 * 305.27681 * 19 17 16 21 21 C 1.53405 * 109.67988 * 65.78869 * 19 17 16 22 22 C 1.53066 * 108.29740 * 184.38070 * 21 19 17 23 23 C 1.50777 * 109.69560 * 311.80233 * 22 21 19 24 24 C 1.38507 * 118.75652 * 197.67004 * 23 22 21 25 25 C 1.38104 * 120.31340 * 180.38505 * 24 23 22 26 26 C 1.38292 * 119.98002 * 0.02562 * 25 24 23 27 27 C 1.37969 * 119.96248 * 359.90496 * 26 25 24 28 28 C 1.38364 * 121.40550 * 17.89312 * 23 22 21 29 29 O 1.35850 * 121.80358 * 359.45812 * 28 23 22 30 30 C 1.47426 * 125.65061 * 179.97438 * 9 7 2 31 31 H 0.96993 * 119.99796 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.88340 * 59.47554 * 10 9 7 33 33 H 1.08999 * 110.01172 * 298.38781 * 10 9 7 34 34 H 0.96698 * 113.99546 * 293.61399 * 13 11 10 35 35 H 0.97000 * 120.00580 * 335.00413 * 16 14 11 36 36 H 1.09001 * 109.69887 * 304.11713 * 21 19 17 37 37 H 1.09001 * 109.69668 * 64.72230 * 21 19 17 38 38 H 1.08997 * 109.44599 * 191.72104 * 22 21 19 39 39 H 1.09000 * 109.40553 * 71.85449 * 22 21 19 40 40 H 1.07999 * 119.84052 * 0.41377 * 24 23 22 41 41 H 1.07998 * 120.01093 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.01627 * 179.87642 * 26 25 24 43 43 H 1.08003 * 119.88826 * 180.02562 * 27 26 25 44 44 H 1.08998 * 110.36647 * 85.33509 * 30 9 7 45 45 H 1.08995 * 110.36399 * 323.01439 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0285 12 1 -0.6324 -4.4187 0.9784 13 8 -1.5631 -4.3190 -0.8796 14 6 0.8523 -4.6558 -0.6127 15 1 0.8576 -4.5959 -1.7010 16 7 1.0291 -6.0394 -0.1649 17 6 1.7598 -6.8983 -0.9030 18 8 2.2713 -6.5258 -1.9376 19 6 1.9469 -8.3199 -0.4392 20 1 2.3534 -8.3256 0.5721 21 6 0.5984 -9.0511 -0.4580 22 6 0.8039 -10.4532 0.1208 23 6 2.0036 -11.0988 -0.5253 24 6 2.1522 -12.4727 -0.4314 25 6 3.2430 -13.0965 -1.0044 26 6 4.1933 -12.3486 -1.6752 27 6 4.0498 -10.9799 -1.7731 28 6 2.9507 -10.3483 -1.1992 29 8 2.8414 -8.9997 -1.3209 30 6 1.9334 -3.7313 0.0005 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5570 -2.0516 -0.8841 33 1 -0.5573 -2.0845 0.9000 34 1 -2.4009 -3.9580 -0.5592 35 1 0.6203 -6.3374 0.6628 36 1 -0.1241 -8.5050 0.1484 37 1 0.2359 -9.1270 -1.4832 38 1 -0.0816 -11.0587 -0.0720 39 1 0.9662 -10.3808 1.1962 40 1 1.4113 -13.0589 0.0919 41 1 3.3538 -14.1682 -0.9287 42 1 5.0476 -12.8357 -2.1218 43 1 4.7925 -10.3971 -2.2976 44 1 2.1655 -4.0426 1.0190 45 1 2.8334 -3.7403 -0.6142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077856728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:58 Heat of formation + Delta-G solvation = -65.724433 kcal Electronic energy + Delta-G solvation = -28287.888783 eV Core-core repulsion = 24271.322413 eV Total energy + Delta-G solvation = -4016.566370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15936 -39.59357 -38.08315 -37.27479 -35.11769 -34.78073 -34.01330 -31.90118 -30.99188 -30.44390 -28.51246 -27.36163 -26.25509 -24.37519 -24.07710 -22.73771 -21.36964 -20.57280 -20.31073 -20.02491 -18.16984 -17.68832 -17.03733 -16.85369 -16.67191 -15.78041 -15.49033 -15.30941 -14.86766 -14.66608 -14.53967 -14.22952 -14.07058 -13.90031 -13.58930 -13.37474 -13.19510 -12.83817 -12.72204 -12.48468 -12.17125 -12.07180 -11.79597 -11.60734 -11.51208 -11.29779 -11.25367 -10.92070 -10.84695 -10.75217 -10.15510 -9.96542 -9.87879 -9.75438 -9.35401 -9.06671 -8.92144 -8.66821 -8.39711 -6.94649 -5.79021 -3.13617 1.03863 1.17074 2.48472 2.61380 3.37451 3.41994 3.43945 3.46062 3.59815 4.21279 4.33032 4.40599 4.41960 4.52884 4.57785 4.67841 4.80974 4.87026 4.96194 5.13466 5.16772 5.21129 5.27176 5.40454 5.43810 5.53037 5.56888 5.61429 5.67315 5.76661 5.77472 6.01482 6.03499 6.07118 6.17886 6.26103 6.42684 6.50424 6.56992 6.80707 7.19571 7.28702 7.43444 7.55705 7.71183 8.06942 8.14145 8.26638 9.12476 9.72366 10.34856 11.32885 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.002353 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.130528 B =11894.910183 C =12653.785406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.107 0.893 16 N -0.709 5.709 17 C 0.521 3.479 18 O -0.512 6.512 19 C 0.077 3.923 20 H 0.098 0.902 21 C -0.149 4.149 22 C -0.076 4.076 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.155 4.155 26 C -0.088 4.088 27 C -0.146 4.146 28 C 0.136 3.864 29 O -0.287 6.287 30 C 0.129 3.871 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.025 0.975 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -25.424 3.334 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.125 0.875 16 N -0.361 5.361 17 C 0.304 3.696 18 O -0.386 6.386 19 C 0.017 3.983 20 H 0.116 0.884 21 C -0.187 4.187 22 C -0.112 4.112 23 C -0.165 4.165 24 C -0.103 4.103 25 C -0.174 4.174 26 C -0.106 4.106 27 C -0.164 4.164 28 C 0.091 3.909 29 O -0.200 6.200 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.638 -25.076 2.073 25.170 hybrid contribution -0.369 0.963 0.953 1.404 sum 0.270 -24.113 3.026 24.303 Atomic orbital electron populations 1.69926 1.04942 1.25142 1.57148 1.24826 0.95802 0.97826 1.01969 0.85983 0.78783 0.83397 0.77247 1.20389 1.21631 1.21712 1.19142 0.90604 0.82010 1.43836 0.90043 1.44249 1.01198 0.99882 1.87423 1.21819 0.85421 0.87722 1.02260 1.23461 0.85500 0.98566 0.91600 0.92446 1.86471 1.18728 1.79878 1.51695 1.22316 0.94643 0.78356 1.01251 0.87498 1.45748 1.53029 1.11358 1.25998 1.19820 0.79306 0.85834 0.84610 1.90770 1.46662 1.77836 1.23337 1.22253 0.91217 0.90834 0.94024 0.88406 1.22220 0.96021 0.96302 1.04184 1.20494 0.95930 0.94993 0.99829 1.19848 0.97577 0.94588 1.04496 1.20879 0.97828 0.92989 0.98581 1.21017 0.95556 0.99946 1.00833 1.20940 0.98896 0.92799 0.97961 1.20656 0.97115 0.94801 1.03857 1.18786 0.93674 0.82275 0.96205 1.86095 1.61013 1.16579 1.56289 1.21854 0.94884 0.85738 0.97338 0.93676 0.92063 0.93231 0.77630 0.76850 0.88851 0.89561 0.89478 0.90038 0.85838 0.85934 0.85399 0.84982 0.95763 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.19 3.39 -170.08 -0.58 -15.77 16 10 C 0.15 3.57 5.15 -3.07 -0.02 3.55 16 11 C 0.07 1.22 3.97 -24.90 -0.10 1.12 16 12 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 13 O -0.56 -9.37 13.40 -35.23 -0.47 -9.84 16 14 C 0.14 2.56 3.15 -65.78 -0.21 2.36 16 15 H 0.11 2.31 7.54 -51.93 -0.39 1.92 16 16 N -0.71 -10.03 5.15 -51.73 -0.27 -10.30 16 17 C 0.52 8.07 7.19 -10.98 -0.08 7.99 16 18 O -0.51 -10.50 16.16 -14.21 -0.23 -10.73 16 19 C 0.08 0.91 3.21 -27.67 -0.09 0.82 16 20 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.15 -1.35 5.46 -26.49 -0.14 -1.50 16 22 C -0.08 -0.57 5.86 -27.81 -0.16 -0.73 16 23 C -0.16 -1.61 5.75 -104.44 -0.60 -2.21 16 24 C -0.08 -0.70 9.67 -39.53 -0.38 -1.08 16 25 C -0.16 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.09 -0.76 10.04 -39.66 -0.40 -1.16 16 27 C -0.15 -1.58 9.94 -39.34 -0.39 -1.97 16 28 C 0.14 1.65 6.47 -39.20 -0.25 1.39 16 29 O -0.29 -4.11 9.47 -39.04 -0.37 -4.48 16 30 C 0.13 2.72 6.93 -2.53 -0.02 2.71 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 33 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 34 H 0.38 4.69 9.12 45.56 0.42 5.11 16 35 H 0.40 4.15 8.38 -40.82 -0.34 3.81 16 36 H 0.09 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -35.13 370.33 -9.96 -45.09 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.69 Total: 6.61 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.49 Total: 2.85 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.27 Total: -52.10 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.07 Total: -25.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.13 -9.96 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077856728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.632 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds