Wall clock time and date at job start Tue Mar 31 2020 17:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99840 * 2 1 4 4 H 1.48498 * 109.47174 * 240.00154 * 3 2 1 5 5 H 1.48493 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46912 * 120.00148 * 3 2 1 7 7 C 1.38808 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00293 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.64705 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.27211 * 178.91987 * 10 9 7 12 12 H 1.08999 * 110.86963 * 96.24392 * 11 10 9 13 13 O 1.42898 * 110.72082 * 219.44578 * 11 10 9 14 14 C 1.55158 * 102.94004 * 337.80711 * 11 10 9 15 15 H 1.08993 * 111.00595 * 277.38511 * 14 11 10 16 16 N 1.46505 * 111.00079 * 153.57229 * 14 11 10 17 17 C 1.34771 * 119.99652 * 154.99804 * 16 14 11 18 18 O 1.21288 * 120.00489 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99807 * 180.02562 * 17 16 14 20 20 H 1.08991 * 109.63717 * 55.40833 * 19 17 16 21 21 C 1.52970 * 109.63667 * 294.99973 * 19 17 16 22 22 C 1.50750 * 109.75152 * 190.99835 * 21 19 17 23 23 C 1.38600 * 118.76155 * 197.08901 * 22 21 19 24 24 C 1.38071 * 120.26984 * 180.46428 * 23 22 21 25 25 C 1.38265 * 119.86003 * 0.02562 * 24 23 22 26 26 C 1.38051 * 119.90249 * 359.88773 * 25 24 23 27 27 C 1.37899 * 121.34334 * 17.33992 * 22 21 19 28 28 C 1.50647 * 121.50295 * 359.10294 * 27 22 21 29 29 O 1.42717 * 110.27512 * 16.25882 * 28 27 22 30 30 C 1.47420 * 125.65031 * 180.02562 * 9 7 2 31 31 H 0.96995 * 119.99966 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.87960 * 59.50295 * 10 9 7 33 33 H 1.08999 * 109.88491 * 298.34283 * 10 9 7 34 34 H 0.96697 * 114.00115 * 293.52100 * 13 11 10 35 35 H 0.97000 * 120.00387 * 335.00685 * 16 14 11 36 36 H 1.09007 * 109.42045 * 70.91603 * 21 19 17 37 37 H 1.08994 * 109.38251 * 311.05950 * 21 19 17 38 38 H 1.07991 * 119.86563 * 0.47662 * 23 22 21 39 39 H 1.07997 * 120.07158 * 180.27859 * 24 23 22 40 40 H 1.08005 * 120.04676 * 179.86109 * 25 24 23 41 41 H 1.08000 * 119.85009 * 179.97438 * 26 25 24 42 42 H 1.09008 * 109.33588 * 136.50235 * 28 27 22 43 43 H 1.08995 * 109.33977 * 256.00758 * 28 27 22 44 44 H 1.08997 * 110.36784 * 85.30576 * 30 9 7 45 45 H 1.09007 * 110.36366 * 322.98698 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4483 -4.0442 -0.0283 12 1 -0.6332 -4.4211 0.9776 13 8 -1.5627 -4.3155 -0.8807 14 6 0.8521 -4.6557 -0.6135 15 1 0.8567 -4.5958 -1.7018 16 7 1.0293 -6.0393 -0.1657 17 6 1.7595 -6.8982 -0.9043 18 8 2.2702 -6.5257 -1.9394 19 6 1.9413 -8.3217 -0.4441 20 1 0.9666 -8.7825 -0.2850 21 6 2.7388 -8.3420 0.8611 22 6 3.1542 -9.7551 1.1824 23 6 3.5641 -10.0528 2.4725 24 6 3.9603 -11.3346 2.7985 25 6 3.9487 -12.3251 1.8339 26 6 3.5389 -12.0297 0.5491 27 6 3.1377 -10.7437 0.2211 28 6 2.6855 -10.4637 -1.1883 29 8 2.6705 -9.0577 -1.4328 30 6 1.9336 -3.7311 -0.0005 31 1 -0.4850 0.8400 0.0004 32 1 -0.5575 -2.0516 -0.8838 33 1 -0.5542 -2.0851 0.9016 34 1 -2.4004 -3.9545 -0.5598 35 1 0.6211 -6.3373 0.6622 36 1 2.1200 -7.9533 1.6700 37 1 3.6265 -7.7190 0.7524 38 1 3.5733 -9.2790 3.2258 39 1 4.2747 -11.5640 3.8059 40 1 4.2601 -13.3282 2.0851 41 1 3.5306 -12.8039 -0.2038 42 1 3.3684 -10.9446 -1.8888 43 1 1.6827 -10.8658 -1.3323 44 1 2.1662 -4.0422 1.0179 45 1 2.8334 -3.7402 -0.6157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078104468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:00 Heat of formation + Delta-G solvation = -69.578502 kcal Electronic energy + Delta-G solvation = -28332.984558 eV Core-core repulsion = 24316.251063 eV Total energy + Delta-G solvation = -4016.733495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82984 -39.51111 -38.09891 -37.26942 -35.08312 -34.19822 -33.36230 -32.01265 -31.72803 -30.11450 -28.32511 -27.08917 -25.84935 -25.07750 -24.14690 -22.58370 -21.15773 -20.55753 -20.38189 -19.97820 -17.69115 -17.52056 -16.98681 -16.69718 -16.33230 -16.08439 -15.66557 -15.21062 -14.93136 -14.62235 -14.44126 -14.22943 -14.01616 -13.89586 -13.53290 -13.34439 -13.05262 -12.92558 -12.68709 -12.40808 -12.21365 -12.07731 -11.91926 -11.51976 -11.41390 -11.31940 -11.25852 -10.90794 -10.79898 -10.19808 -10.04286 -9.92974 -9.84808 -9.66004 -9.30355 -9.10876 -8.93219 -8.86308 -8.63674 -6.92561 -5.76900 -3.11579 0.96776 1.02052 2.69402 2.80881 3.37301 3.39939 3.44105 3.45287 3.84087 4.27776 4.32094 4.41926 4.45275 4.60507 4.61357 4.72412 4.79156 4.86875 5.00053 5.04293 5.17106 5.18336 5.28314 5.37030 5.42895 5.51803 5.56133 5.64561 5.64873 5.74466 5.80169 6.05706 6.06744 6.10776 6.16186 6.22401 6.47830 6.59547 6.63144 6.72171 6.89177 7.31170 7.45414 7.62620 7.72744 8.10247 8.16665 8.35639 9.14394 9.74432 10.37164 11.34831 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002470 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.754720 B =11332.875108 C =11823.836294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.107 0.893 16 N -0.712 5.712 17 C 0.520 3.480 18 O -0.513 6.513 19 C 0.075 3.925 20 H 0.088 0.912 21 C -0.105 4.105 22 C -0.069 4.069 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.120 4.120 28 C 0.099 3.901 29 O -0.343 6.343 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.376 0.624 35 H 0.397 0.603 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -24.867 6.093 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.125 0.875 16 N -0.364 5.364 17 C 0.304 3.696 18 O -0.387 6.387 19 C 0.013 3.987 20 H 0.106 0.894 21 C -0.143 4.143 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.120 4.120 28 C 0.022 3.978 29 O -0.260 6.260 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.223 0.777 35 H 0.231 0.769 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.419 -24.562 4.790 25.141 hybrid contribution -0.284 0.791 1.151 1.426 sum 2.135 -23.770 5.941 24.594 Atomic orbital electron populations 1.69909 1.04933 1.25352 1.57001 1.24817 0.95786 0.97792 1.01952 0.86140 0.78440 0.82845 0.77999 1.21008 1.21558 1.21110 1.19044 0.90537 0.82059 1.44077 0.90171 1.44237 1.01202 0.99876 1.87445 1.21825 0.85412 0.87754 1.02197 1.23469 0.85550 0.98555 0.91587 0.92468 1.86472 1.18761 1.80026 1.51536 1.22303 0.94534 0.78560 1.01215 0.87545 1.45805 1.53159 1.11424 1.25995 1.19941 0.79093 0.86127 0.84461 1.90757 1.46722 1.77843 1.23351 1.21916 0.96189 0.91761 0.88790 0.89410 1.21076 1.01943 0.94394 0.96872 1.19442 0.99477 0.94601 0.93401 1.21106 0.99342 0.97068 0.95731 1.21138 0.99732 0.93158 0.99521 1.21100 1.00214 0.99422 0.93309 1.20974 0.99365 0.95625 0.96962 1.20293 1.01077 0.94079 0.96558 1.21526 1.01340 0.82378 0.92532 1.88235 1.73772 1.17085 1.46918 1.21850 0.94884 0.85728 0.97275 0.93585 0.92061 0.93285 0.77666 0.76949 0.88810 0.88629 0.85629 0.85866 0.85919 0.85788 0.87157 0.91415 0.95817 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.26 3.39 -170.07 -0.58 -15.83 16 10 C 0.15 3.60 5.15 -3.07 -0.02 3.59 16 11 C 0.07 1.24 3.98 -24.90 -0.10 1.14 16 12 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 13 O -0.56 -9.59 13.39 -35.23 -0.47 -10.06 16 14 C 0.14 2.59 3.15 -65.77 -0.21 2.38 16 15 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 16 N -0.71 -10.27 5.16 -51.72 -0.27 -10.53 16 17 C 0.52 8.16 7.16 -10.99 -0.08 8.08 16 18 O -0.51 -10.61 16.15 -14.21 -0.23 -10.84 16 19 C 0.07 0.89 3.04 -27.90 -0.08 0.81 16 20 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 21 C -0.11 -1.05 5.28 -27.87 -0.15 -1.20 16 22 C -0.07 -0.68 5.77 -104.59 -0.60 -1.28 16 23 C -0.11 -0.98 9.67 -39.51 -0.38 -1.36 16 24 C -0.12 -0.90 10.05 -39.63 -0.40 -1.30 16 25 C -0.12 -0.90 10.05 -39.64 -0.40 -1.30 16 26 C -0.11 -0.88 9.67 -39.50 -0.38 -1.26 16 27 C -0.12 -1.14 5.80 -104.62 -0.61 -1.74 16 28 C 0.10 0.94 6.66 35.98 0.24 1.18 16 29 O -0.34 -4.65 9.99 -54.99 -0.55 -5.20 16 30 C 0.13 2.75 6.93 -2.52 -0.02 2.73 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 33 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 34 H 0.38 4.82 9.12 45.56 0.42 5.23 16 35 H 0.40 4.30 8.57 -40.82 -0.35 3.95 16 36 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -35.49 370.68 -10.09 -45.58 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.70 Total: 6.77 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.43 Total: 3.61 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.27 Total: -52.50 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.25 Total: -26.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.49 -10.09 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078104468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.999 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds