Wall clock time and date at job start Tue Mar 31 2020 17:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47057 * 269.99627 * 3 2 1 5 5 H 1.48499 * 109.47307 * 30.00061 * 3 2 1 6 6 H 1.48502 * 109.47129 * 150.00165 * 3 2 1 7 7 C 1.38813 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00386 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.90371 * 336.25057 * 10 9 7 12 12 C 1.53953 * 113.66618 * 107.43771 * 10 9 7 13 13 C 1.53781 * 87.01843 * 139.93496 * 12 10 9 14 14 H 1.08999 * 113.61540 * 89.22525 * 13 12 10 15 15 C 1.53004 * 113.61435 * 220.05025 * 13 12 10 16 16 N 1.46500 * 109.46786 * 274.13339 * 15 13 12 17 17 C 1.34774 * 119.99921 * 180.02562 * 16 15 13 18 18 O 1.21587 * 120.00027 * 0.02562 * 17 16 15 19 19 C 1.47540 * 120.00297 * 180.02562 * 17 16 15 20 20 C 1.39776 * 120.13959 * 0.02562 * 19 17 16 21 21 C 1.37752 * 119.94832 * 179.69799 * 20 19 17 22 22 C 1.38484 * 120.33208 * 0.58844 * 21 20 19 23 23 C 1.38593 * 120.40895 * 359.48432 * 22 21 20 24 24 C 1.38990 * 119.90694 * 0.13298 * 23 22 21 25 25 O 1.35822 * 120.87118 * 180.24150 * 24 23 22 26 26 C 1.43174 * 116.71342 * 342.59911 * 25 24 23 27 27 C 1.53476 * 108.22736 * 46.27889 * 26 25 24 28 28 O 1.36144 * 119.37141 * 179.88028 * 23 22 21 29 29 C 1.53774 * 113.61454 * 204.99996 * 10 9 7 30 30 H 0.97006 * 120.00474 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99746 * 0.02562 * 9 7 2 32 32 H 1.09002 * 113.61553 * 25.41265 * 12 10 9 33 33 H 1.09000 * 113.66584 * 254.46011 * 12 10 9 34 34 H 1.08997 * 109.46997 * 154.13450 * 15 13 12 35 35 H 1.08996 * 109.47338 * 34.13267 * 15 13 12 36 36 H 0.96997 * 120.00118 * 0.02562 * 16 15 13 37 37 H 1.07996 * 120.02031 * 359.96731 * 20 19 17 38 38 H 1.07998 * 119.82995 * 180.35107 * 21 20 19 39 39 H 1.08002 * 119.79673 * 179.76927 * 22 21 20 40 40 H 1.09001 * 109.70784 * 165.95730 * 26 25 24 41 41 H 1.08996 * 109.71857 * 286.59188 * 26 25 24 42 42 H 1.08999 * 109.71369 * 60.00167 * 27 26 25 43 43 H 1.09010 * 109.70799 * 180.62261 * 27 26 25 44 44 H 1.08999 * 113.61636 * 105.46466 * 29 10 9 45 45 H 1.09005 * 113.69002 * 334.57846 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0664 -3.5649 -0.4020 12 6 2.0001 -4.4027 1.3472 13 6 1.8476 -5.6974 0.5315 14 1 2.7977 -6.1645 0.2721 15 6 0.8440 -6.6847 1.1306 16 7 1.5164 -7.5179 2.1306 17 6 0.8244 -8.4657 2.7933 18 8 -0.3578 -8.6296 2.5610 19 6 1.5013 -9.3045 3.8008 20 6 2.8600 -9.1183 4.0707 21 6 3.4866 -9.8995 5.0166 22 6 2.7799 -10.8785 5.6947 23 6 1.4325 -11.0765 5.4374 24 6 0.7850 -10.2906 4.4914 25 8 -0.5359 -10.4645 4.2272 26 6 -1.1211 -11.6988 4.6563 27 6 -0.6706 -11.9678 6.0985 28 8 0.7589 -12.0466 6.1145 29 6 1.2606 -4.8290 -0.5939 30 1 -0.4851 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1223 -4.1573 1.9450 33 1 2.9285 -4.3518 1.9160 34 1 0.4420 -7.3187 0.3404 35 1 0.0309 -6.1342 1.6037 36 1 2.4595 -7.3874 2.3157 37 1 3.4171 -8.3597 3.5411 38 1 4.5352 -9.7502 5.2277 39 1 3.2807 -11.4885 6.4319 40 1 -2.2078 -11.6230 4.6186 41 1 -0.7858 -12.5092 4.0092 42 1 -1.0011 -11.1546 6.7447 43 1 -1.0945 -12.9099 6.4464 44 1 1.5928 -5.1218 -1.5899 45 1 0.1800 -4.7016 -0.5286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086101168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:07 Heat of formation + Delta-G solvation = -69.762804 kcal Electronic energy + Delta-G solvation = -27505.371851 eV Core-core repulsion = 23488.630364 eV Total energy + Delta-G solvation = -4016.741487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39060 -40.84099 -39.77929 -38.52232 -38.13145 -36.04715 -35.02392 -32.50964 -32.15162 -31.82794 -29.48425 -28.66941 -26.44172 -26.04713 -25.60644 -24.79694 -22.50086 -22.01932 -21.62911 -20.54886 -19.87688 -19.03945 -18.57156 -18.41560 -17.50376 -17.03748 -16.64553 -16.55114 -16.30020 -16.09295 -15.85064 -15.66045 -15.49228 -15.24387 -15.08249 -14.84806 -14.65413 -14.41515 -13.94175 -13.40950 -13.22213 -13.16707 -13.02465 -12.94675 -12.83510 -12.64840 -12.21389 -12.17634 -12.07199 -12.04655 -11.75161 -11.56277 -11.52121 -11.08814 -10.85530 -10.75787 -10.14987 -9.70024 -9.16221 -8.96385 -7.93268 -5.21617 -0.27282 0.25067 1.47987 1.49900 1.58220 1.80896 1.99613 2.14290 2.25548 2.57850 2.75374 3.20469 3.38579 3.55124 3.73023 3.75578 3.82142 3.87669 3.90463 3.95858 4.13104 4.22503 4.27305 4.34200 4.36920 4.43752 4.51629 4.54841 4.56941 4.65159 4.78471 4.98280 5.00400 5.01615 5.04090 5.06869 5.24033 5.32561 5.36798 5.43990 5.54317 5.60014 5.75349 5.85832 6.28929 6.31965 6.56803 7.23653 7.34197 8.12994 8.34550 9.30365 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.001969 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.475928 B =14214.002487 C =14573.744410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.144 3.856 11 H 0.084 0.916 12 C -0.154 4.154 13 C -0.094 4.094 14 H 0.125 0.875 15 C 0.140 3.860 16 N -0.708 5.708 17 C 0.551 3.449 18 O -0.570 6.570 19 C -0.162 4.162 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.086 4.086 23 C 0.022 3.978 24 C 0.083 3.917 25 O -0.307 6.307 26 C 0.006 3.994 27 C 0.020 3.980 28 O -0.315 6.315 29 C -0.137 4.137 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.414 0.586 37 H 0.164 0.836 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.159 0.841 44 H 0.080 0.920 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -29.668 12.697 33.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.035 3.965 11 H 0.102 0.898 12 C -0.194 4.194 13 C -0.113 4.113 14 H 0.143 0.857 15 C 0.016 3.984 16 N -0.361 5.361 17 C 0.339 3.661 18 O -0.450 6.450 19 C -0.166 4.166 20 C -0.094 4.094 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.023 4.023 24 C 0.035 3.965 25 O -0.220 6.220 26 C -0.069 4.069 27 C -0.055 4.055 28 O -0.230 6.230 29 C -0.177 4.177 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.253 0.747 37 H 0.181 0.819 38 H 0.195 0.805 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.176 0.824 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.015 -29.652 12.512 32.940 hybrid contribution -0.598 1.189 0.003 1.331 sum 6.417 -28.463 12.515 31.749 Atomic orbital electron populations 1.69830 1.06767 1.25966 1.59863 1.25623 0.96383 1.01340 1.04080 0.85123 0.77744 0.79426 0.77386 1.21444 1.22589 1.19114 1.19751 0.91653 0.85323 1.40486 0.90125 1.42654 1.05349 1.01308 1.87474 1.21993 0.95676 0.83742 0.95132 0.89834 1.23754 1.01122 0.96002 0.98560 1.22482 0.99430 0.92887 0.96538 0.85661 1.21228 0.95013 0.91864 0.90273 1.45752 1.14391 1.35295 1.40631 1.18388 0.86170 0.80348 0.81171 1.90789 1.17096 1.70181 1.66912 1.19457 0.95286 1.00737 1.01089 1.21512 0.90766 0.99541 0.97616 1.21298 1.02085 0.94341 0.95497 1.21063 0.90186 0.98677 1.00505 1.19062 0.94238 0.94006 0.95011 1.19230 0.84760 0.97423 0.95054 1.86562 1.19752 1.38918 1.76816 1.24019 1.01667 0.85268 0.95937 1.23903 0.78190 1.06929 0.96490 1.86296 1.20780 1.46267 1.69695 1.23327 0.99869 0.95979 0.98515 0.94171 0.79746 0.92901 0.90980 0.91735 0.93781 0.74726 0.81904 0.80463 0.81973 0.84044 0.90091 0.90496 0.82360 0.90174 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.43 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -36.96 5.40 -320.17 -1.73 -38.69 16 10 C 0.14 5.40 4.48 45.57 0.20 5.60 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.15 -4.85 7.45 31.18 0.23 -4.62 16 13 C -0.09 -2.31 3.75 -10.27 -0.04 -2.35 16 14 H 0.13 2.26 8.14 -2.39 -0.02 2.25 16 15 C 0.14 3.72 5.50 86.38 0.47 4.20 16 16 N -0.71 -16.34 5.51 -466.27 -2.57 -18.91 16 17 C 0.55 16.03 7.76 86.70 0.67 16.71 16 18 O -0.57 -21.80 15.10 17.19 0.26 -21.54 16 19 C -0.16 -3.84 5.89 -20.00 -0.12 -3.95 16 20 C -0.08 -1.11 9.53 22.53 0.21 -0.89 16 21 C -0.11 -1.23 10.02 22.21 0.22 -1.01 16 22 C -0.09 -1.18 9.95 22.41 0.22 -0.95 16 23 C 0.02 0.43 6.49 22.54 0.15 0.58 16 24 C 0.08 2.07 6.51 22.90 0.15 2.22 16 25 O -0.31 -8.43 8.42 -64.56 -0.54 -8.97 16 26 C 0.01 0.10 7.26 72.14 0.52 0.62 16 27 C 0.02 0.24 7.26 72.14 0.52 0.77 16 28 O -0.32 -5.59 10.42 -82.93 -0.86 -6.45 16 29 C -0.14 -4.22 7.40 31.12 0.23 -3.99 16 30 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 31 H 0.37 20.53 7.93 -92.70 -0.73 19.80 16 32 H 0.05 1.96 7.92 -2.39 -0.02 1.94 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.42 7.87 -2.39 -0.02 1.40 16 36 H 0.41 6.51 6.50 -92.71 -0.60 5.91 16 37 H 0.16 1.35 6.40 -2.91 -0.02 1.34 16 38 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.16 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16 Total: -1.00 -81.04 373.67 1.52 -79.51 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.31 Total: 31.00 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.97 Total: -3.86 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.01 Total: -118.03 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.15 Total: -36.96 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -81.04 1.52 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086101168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.751 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds