Wall clock time and date at job start Tue Mar 31 2020 17:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99418 * 3 2 1 5 5 H 1.48497 * 109.47719 * 29.99516 * 3 2 1 6 6 H 1.48502 * 109.47249 * 150.00055 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53778 * 87.08035 * 89.11438 * 12 10 9 14 14 H 1.08999 * 113.61280 * 270.79710 * 13 12 10 15 15 C 1.53001 * 113.61263 * 139.98349 * 13 12 10 16 16 N 1.46505 * 109.47164 * 174.99956 * 15 13 12 17 17 C 1.34773 * 119.99613 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00338 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99666 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.70631 * 305.00112 * 19 17 16 21 21 C 1.53472 * 109.70817 * 65.58905 * 19 17 16 22 22 O 1.43162 * 108.25423 * 179.35961 * 21 19 17 23 23 C 1.36111 * 116.74468 * 313.87683 * 22 21 19 24 24 C 1.38695 * 119.39481 * 197.01565 * 23 22 21 25 25 C 1.38204 * 120.06510 * 180.32872 * 24 23 22 26 26 C 1.38253 * 120.11073 * 0.02562 * 25 24 23 27 27 C 1.38198 * 120.11466 * 359.91492 * 26 25 24 28 28 C 1.38701 * 120.06508 * 0.03730 * 27 26 25 29 29 O 1.36112 * 119.40001 * 180.12893 * 28 27 26 30 30 C 1.53778 * 87.08449 * 25.43264 * 13 12 10 31 31 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.61103 * 203.66698 * 12 10 9 34 34 H 1.08997 * 113.61087 * 334.48007 * 12 10 9 35 35 H 1.09008 * 109.46870 * 294.99672 * 15 13 12 36 36 H 1.09000 * 109.47055 * 54.99500 * 15 13 12 37 37 H 0.96988 * 119.99988 * 359.97438 * 16 15 13 38 38 H 1.09009 * 109.70655 * 299.10660 * 21 19 17 39 39 H 1.09003 * 109.70596 * 59.72796 * 21 19 17 40 40 H 1.08002 * 119.97038 * 0.34013 * 24 23 22 41 41 H 1.08000 * 119.94183 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.94376 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.96549 * 180.02562 * 27 26 25 44 44 H 1.08993 * 113.61229 * 220.02023 * 30 13 12 45 45 H 1.09000 * 113.61263 * 89.11673 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 0.7206 -5.0791 -0.8221 14 1 -0.1909 -4.5251 -1.0464 15 6 0.6198 -6.5616 -1.1866 16 7 -0.0121 -6.6993 -2.5012 17 6 -0.2058 -7.9235 -3.0307 18 8 0.1424 -8.9110 -2.4188 19 6 -0.8563 -8.0652 -4.3827 20 1 -1.8189 -7.5538 -4.3829 21 6 0.0524 -7.4584 -5.4604 22 8 -0.5870 -7.6229 -6.7307 23 6 -1.1117 -8.8500 -6.9980 24 6 -1.4197 -9.1882 -8.3074 25 6 -1.9594 -10.4279 -8.5936 26 6 -2.1943 -11.3339 -7.5760 27 6 -1.8885 -11.0036 -6.2694 28 6 -1.3457 -9.7615 -5.9754 29 8 -1.0473 -9.4514 -4.6841 30 6 1.9992 -4.4021 -1.3433 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 -0.0002 33 1 1.8872 -5.6366 0.9736 34 1 0.4949 -4.5190 1.3076 35 1 1.6186 -6.9972 -1.2161 36 1 0.0194 -7.0796 -0.4388 37 1 -0.2909 -5.9096 -2.9904 38 1 0.2040 -6.3979 -5.2589 39 1 1.0130 -7.9735 -5.4639 40 1 -1.2374 -8.4823 -9.1041 41 1 -2.1989 -10.6891 -9.6138 42 1 -2.6165 -12.3017 -7.8027 43 1 -2.0726 -11.7133 -5.4764 44 1 1.8294 -3.7479 -2.1983 45 1 2.8281 -5.0934 -1.4960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086546494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:27 Heat of formation + Delta-G solvation = -44.886310 kcal Electronic energy + Delta-G solvation = -27427.501958 eV Core-core repulsion = 23411.839197 eV Total energy + Delta-G solvation = -4015.662761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.79826 -39.91207 -38.65854 -37.88984 -37.51545 -34.87613 -33.34503 -31.97598 -31.01202 -30.22811 -29.07769 -27.32342 -25.55676 -25.13827 -23.77731 -23.19129 -22.13787 -21.63900 -20.63701 -19.17869 -18.62622 -18.07342 -17.82557 -17.27879 -16.63057 -16.06752 -15.96898 -15.49651 -15.24439 -15.04010 -14.80756 -14.64843 -14.27768 -14.21503 -14.14137 -13.89868 -13.62269 -13.24024 -12.95588 -12.51787 -12.37125 -12.28423 -12.00614 -11.74048 -11.54557 -11.48706 -11.11361 -10.97518 -10.88507 -10.57407 -10.27361 -10.19346 -9.91380 -9.75450 -9.57220 -9.22364 -9.02114 -8.94705 -8.45036 -7.06441 -5.86368 -3.15709 0.92996 0.93538 2.13961 2.23893 2.66999 3.23153 3.37533 3.38051 3.43757 3.45208 3.75072 4.19174 4.26897 4.31774 4.50755 4.61306 4.67540 4.88904 4.93759 4.94643 4.96833 5.03080 5.07397 5.13481 5.39040 5.45586 5.50821 5.59897 5.75247 5.77835 5.80600 5.85430 5.99210 6.10130 6.12861 6.18308 6.25140 6.29598 6.48418 6.50699 6.65791 6.80413 6.95953 7.00587 7.20294 7.63833 7.87672 8.32723 9.43564 10.00412 10.34456 11.35938 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002009 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.924602 B =13937.301972 C =14903.279361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.132 3.868 16 N -0.716 5.716 17 C 0.522 3.478 18 O -0.514 6.514 19 C 0.034 3.966 20 H 0.112 0.888 21 C 0.034 3.966 22 O -0.300 6.300 23 C 0.046 3.954 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.111 4.111 28 C 0.053 3.947 29 O -0.279 6.279 30 C -0.169 4.169 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.404 0.596 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.067 0.933 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -20.833 -14.888 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.009 3.991 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.388 6.388 19 C -0.027 4.027 20 H 0.129 0.871 21 C -0.042 4.042 22 O -0.214 6.214 23 C 0.001 3.999 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.133 4.133 27 C -0.130 4.130 28 C 0.008 3.992 29 O -0.193 6.193 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.535 -21.329 -14.343 25.945 hybrid contribution -0.064 1.419 -0.177 1.432 sum -3.599 -19.910 -14.520 24.904 Atomic orbital electron populations 1.69654 1.05141 1.25850 1.57373 1.24770 0.95554 0.97832 1.02700 0.86164 0.78681 0.83633 0.77546 1.21664 1.21736 1.20682 1.19287 0.91132 0.83945 1.43092 0.90970 1.42168 1.05668 0.99427 1.87129 1.21049 0.95174 0.85595 0.92695 0.91890 1.23449 1.00540 0.99750 0.94982 1.22734 0.99728 0.92585 0.98866 0.88732 1.21589 0.97720 0.97457 0.82307 1.45957 1.62186 1.07239 1.21532 1.19583 0.79742 0.84173 0.86028 1.90762 1.49268 1.37328 1.61454 1.22947 1.01382 0.83497 0.94874 0.87050 1.23588 0.95140 1.04315 0.81135 1.86352 1.71144 1.28230 1.35658 1.18976 1.00841 0.86247 0.93814 1.20472 1.01806 0.97560 0.93231 1.20947 0.99965 0.92894 0.99757 1.20944 1.00744 1.00076 0.91568 1.20485 0.99958 0.94763 0.97787 1.19020 1.01567 0.96008 0.82641 1.86399 1.85798 1.23572 1.23508 1.23910 0.95558 0.99667 1.01907 0.93405 0.78113 0.90399 0.91226 0.91161 0.91411 0.76086 0.85082 0.89616 0.84646 0.84971 0.84939 0.84586 0.91427 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.70 5.31 -52.64 -0.28 -16.98 16 10 C 0.17 3.09 4.56 -67.12 -0.31 2.78 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.15 -2.21 7.39 -25.92 -0.19 -2.40 16 13 C -0.12 -1.63 3.63 -89.81 -0.33 -1.95 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.13 1.58 5.51 -4.04 -0.02 1.56 16 16 N -0.72 -7.59 5.53 -60.29 -0.33 -7.92 16 17 C 0.52 6.44 7.19 -10.99 -0.08 6.36 16 18 O -0.51 -8.51 16.52 -14.15 -0.23 -8.74 16 19 C 0.03 0.35 3.43 -27.64 -0.09 0.26 16 20 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 21 C 0.03 0.31 6.53 37.40 0.24 0.56 16 22 O -0.30 -3.19 10.42 -32.88 -0.34 -3.53 16 23 C 0.05 0.50 6.49 -39.14 -0.25 0.24 16 24 C -0.11 -0.98 9.96 -39.43 -0.39 -1.37 16 25 C -0.12 -0.84 10.04 -39.59 -0.40 -1.24 16 26 C -0.12 -0.85 10.04 -39.59 -0.40 -1.24 16 27 C -0.11 -1.06 9.96 -39.43 -0.39 -1.45 16 28 C 0.05 0.61 6.49 -39.14 -0.25 0.35 16 29 O -0.28 -3.61 9.62 -47.06 -0.45 -4.07 16 30 C -0.17 -2.58 7.43 -25.92 -0.19 -2.77 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.38 9.64 7.90 -40.82 -0.32 9.31 16 33 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.87 7.84 -51.92 -0.41 0.47 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.42 8.37 -40.82 -0.34 3.07 16 38 H 0.13 0.84 8.04 -51.92 -0.42 0.43 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.08 378.93 -10.05 -43.13 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.51 Total: 9.55 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.30 Total: -7.41 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.11 Total: -51.38 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.03 Total: -16.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.08 -10.05 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086546494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.756 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds