Wall clock time and date at job start Tue Mar 31 2020 17:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46823 * 300.00140 * 3 2 1 6 6 H 1.48503 * 109.46796 * 59.99794 * 3 2 1 7 7 C 1.38814 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 162.75622 * 7 2 1 9 9 N 1.36939 * 120.00481 * 343.02962 * 7 2 1 10 10 C 1.46927 * 120.63012 * 151.77767 * 9 7 2 11 11 C 1.53618 * 108.54374 * 126.37257 * 10 9 7 12 12 C 1.53043 * 109.24352 * 54.85236 * 11 10 9 13 13 H 1.09001 * 109.45929 * 58.53268 * 12 11 10 14 14 N 1.46498 * 109.45129 * 178.49651 * 12 11 10 15 15 C 1.34774 * 120.00262 * 275.06649 * 14 12 11 16 16 O 1.21557 * 119.99801 * 359.97438 * 15 14 12 17 17 C 1.47850 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.39598 * 120.13136 * 359.71742 * 17 15 14 19 19 C 1.37995 * 119.88898 * 179.76624 * 18 17 15 20 20 C 1.38138 * 120.11214 * 0.50987 * 19 18 17 21 21 C 1.38758 * 120.27187 * 359.74781 * 20 19 18 22 22 C 1.37706 * 120.18327 * 359.97438 * 21 20 19 23 23 C 1.51108 * 107.25104 * 179.97438 * 21 20 19 24 24 O 1.43924 * 105.96272 * 342.29141 * 23 21 20 25 25 C 1.43935 * 104.96833 * 28.51454 * 24 23 21 26 26 C 1.53044 * 109.53800 * 298.51375 * 12 11 10 27 27 H 1.09003 * 109.52146 * 301.39613 * 26 12 11 28 28 O 1.42902 * 109.49562 * 181.31628 * 26 12 11 29 29 C 1.46926 * 120.63016 * 332.05819 * 9 7 2 30 30 H 0.96995 * 119.99600 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58235 * 246.20187 * 10 9 7 32 32 H 1.09001 * 109.58777 * 6.62358 * 10 9 7 33 33 H 1.09001 * 109.63463 * 294.86774 * 11 10 9 34 34 H 1.09001 * 109.46096 * 174.74003 * 11 10 9 35 35 H 0.97001 * 119.99649 * 95.05725 * 14 12 11 36 36 H 1.08002 * 120.05399 * 0.02562 * 18 17 15 37 37 H 1.08009 * 119.94488 * 180.25435 * 19 18 17 38 38 H 1.08003 * 120.09616 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.15305 * 101.41308 * 23 21 20 40 40 H 1.09003 * 110.15475 * 223.16495 * 23 21 20 41 41 H 1.08998 * 110.15362 * 212.35528 * 25 24 23 42 42 H 1.08994 * 110.14908 * 90.59835 * 25 24 23 43 43 H 0.96704 * 113.99682 * 180.16119 * 28 26 12 44 44 H 1.09004 * 109.58335 * 353.37286 * 29 9 7 45 45 H 1.08996 * 109.58482 * 113.79346 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0538 -1.2234 -0.2767 9 7 1.3702 -2.3622 0.3472 10 6 1.8130 -3.6530 -0.1975 11 6 2.0680 -4.6152 0.9725 12 6 0.8105 -4.6979 1.8409 13 1 -0.0279 -5.0402 1.2342 14 7 1.0365 -5.6421 2.9380 15 6 0.8349 -6.9606 2.7448 16 8 0.4651 -7.3663 1.6602 17 6 1.0635 -7.9135 3.8519 18 6 1.4939 -7.4511 5.0968 19 6 1.7011 -8.3444 6.1280 20 6 1.4934 -9.6952 5.9270 21 6 1.0708 -10.1615 4.6904 22 6 0.8550 -9.2799 3.6548 23 6 0.9403 -11.6631 4.7984 24 8 1.6921 -12.0428 5.9655 25 6 1.6353 -10.8961 6.8336 26 6 0.4934 -3.3152 2.4153 27 1 1.3410 -2.9614 3.0021 28 8 -0.6631 -3.3996 3.2505 29 6 0.2240 -2.3389 1.2660 30 1 -0.4849 0.8400 -0.0004 31 1 1.0383 -4.0604 -0.8471 32 1 2.7330 -3.5138 -0.7652 33 1 2.9011 -4.2494 1.5727 34 1 2.3070 -5.6049 0.5832 35 1 1.3314 -5.3182 3.8035 36 1 1.6604 -6.3956 5.2537 37 1 2.0301 -7.9872 7.0927 38 1 0.5265 -9.6445 2.6927 39 1 -0.1066 -11.9413 4.9192 40 1 1.3567 -12.1410 3.9116 41 1 2.5533 -10.8203 7.4163 42 1 0.7736 -10.9698 7.4970 43 1 -0.9239 -2.5572 3.6473 44 1 0.0952 -1.3324 1.6642 45 1 -0.6775 -2.6414 0.7332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090638728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:54 Heat of formation + Delta-G solvation = -94.193059 kcal Electronic energy + Delta-G solvation = -28251.732225 eV Core-core repulsion = 24233.931362 eV Total energy + Delta-G solvation = -4017.800862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90091 -40.99335 -39.51793 -38.03987 -36.90476 -35.92080 -34.08769 -32.71268 -32.59668 -31.09227 -30.49565 -28.96315 -27.33180 -25.95952 -24.32728 -23.73055 -23.25684 -22.68173 -21.42332 -21.03066 -19.18456 -18.51212 -18.13417 -17.73022 -17.45278 -17.18430 -16.80026 -16.67246 -16.06287 -15.97449 -15.59181 -15.37800 -15.28507 -15.05906 -14.75325 -14.55553 -14.42044 -13.93762 -13.87338 -13.61727 -13.49844 -13.37637 -13.19894 -13.05761 -12.75160 -12.69599 -12.51801 -12.12161 -12.01808 -11.99317 -11.89709 -11.45907 -11.13610 -11.09932 -10.92522 -10.62492 -10.19233 -10.00164 -9.65014 -8.77812 -7.91755 -5.39319 -0.34659 0.20957 1.47184 1.50133 1.60515 1.70649 2.00541 2.49011 2.68473 2.91269 3.06545 3.12816 3.26148 3.55247 3.60945 3.65193 3.86342 3.89051 4.03318 4.14026 4.27546 4.30362 4.38359 4.38966 4.42118 4.43667 4.54937 4.65739 4.71919 4.73160 4.84678 4.88388 4.91986 5.02141 5.12953 5.14247 5.17435 5.22652 5.30771 5.39489 5.55034 5.60996 5.63513 5.74932 6.32338 6.47859 6.81341 7.09001 7.13585 7.76032 8.29301 9.15091 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030693 B = 0.002294 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.046641 B =12202.048200 C =12424.511737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.169 3.831 13 H 0.056 0.944 14 N -0.696 5.696 15 C 0.554 3.446 16 O -0.583 6.583 17 C -0.143 4.143 18 C -0.075 4.075 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.153 4.153 22 C -0.050 4.050 23 C 0.092 3.908 24 O -0.378 6.378 25 C 0.087 3.913 26 C 0.093 3.907 27 H 0.070 0.930 28 O -0.574 6.574 29 C 0.156 3.844 30 H 0.252 0.748 31 H 0.009 0.991 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.412 0.588 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.393 0.607 44 H 0.073 0.927 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -17.977 17.899 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.064 3.936 13 H 0.074 0.926 14 N -0.346 5.346 15 C 0.343 3.657 16 O -0.464 6.464 17 C -0.146 4.146 18 C -0.093 4.093 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.153 4.153 22 C -0.069 4.069 23 C 0.016 3.984 24 O -0.297 6.297 25 C 0.011 3.989 26 C 0.032 3.968 27 H 0.088 0.912 28 O -0.381 6.381 29 C 0.029 3.971 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.172 0.828 37 H 0.186 0.814 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.242 0.758 44 H 0.091 0.909 45 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 3.915 -18.942 17.003 25.753 hybrid contribution -0.210 2.070 -0.385 2.116 sum 3.705 -16.872 16.618 23.969 Atomic orbital electron populations 1.70194 1.06735 1.26050 1.55135 1.25857 0.96041 1.01661 1.00877 0.85168 0.78681 0.79552 0.76779 1.18921 1.22333 1.21273 1.19586 0.93123 0.85462 1.41206 0.90913 1.44289 1.35571 1.02528 1.50510 1.21128 0.97902 0.85697 0.93753 1.22283 0.96907 0.99572 0.97548 1.20707 0.97656 0.87209 0.88003 0.92608 1.45763 1.67812 1.05508 1.15541 1.18644 0.76554 0.82792 0.87721 1.90749 1.48701 1.78967 1.27993 1.19818 1.06623 0.93480 0.94652 1.21585 0.95449 1.01393 0.90877 1.20689 0.99583 0.90371 1.00547 1.21671 0.97602 0.96281 0.95593 1.21140 1.01931 0.97460 0.94753 1.20425 0.96541 0.91197 0.98777 1.21859 0.97895 0.88706 0.89988 1.89073 1.74674 1.36103 1.29862 1.22044 1.05033 0.80145 0.91656 1.22548 0.88033 0.94200 0.91999 0.91223 1.86399 1.47639 1.38102 1.65912 1.21233 0.88282 0.98127 0.89430 0.93902 0.97347 0.91369 0.90423 0.91271 0.75024 0.82768 0.81398 0.85525 0.88864 0.87535 0.86127 0.88245 0.75767 0.90894 0.98775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.58 11.18 21.65 0.24 -53.34 16 2 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 3 Si 0.97 42.96 29.59 68.60 2.03 44.99 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.26 -13.94 9.58 84.03 0.81 -13.13 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.60 -29.57 2.99 -698.27 -2.09 -31.65 16 10 C 0.14 5.97 6.54 86.51 0.57 6.53 16 11 C -0.12 -4.32 5.67 30.82 0.17 -4.14 16 12 C 0.17 6.01 2.12 45.02 0.10 6.11 16 13 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 14 N -0.70 -19.93 4.87 -445.27 -2.17 -22.10 16 15 C 0.55 17.31 7.74 86.79 0.67 17.98 16 16 O -0.58 -23.11 16.01 -3.89 -0.06 -23.17 16 17 C -0.14 -3.45 5.88 -20.07 -0.12 -3.56 16 18 C -0.07 -1.25 9.54 22.54 0.22 -1.04 16 19 C -0.09 -1.23 10.03 22.19 0.22 -1.01 16 20 C -0.11 -1.68 6.33 -19.63 -0.12 -1.80 16 21 C -0.15 -2.85 6.31 -19.74 -0.12 -2.98 16 22 C -0.05 -1.18 9.59 22.48 0.22 -0.96 16 23 C 0.09 1.39 7.63 71.37 0.54 1.93 16 24 O -0.38 -6.29 11.72 -148.98 -1.75 -8.04 16 25 C 0.09 0.98 7.63 71.37 0.54 1.53 16 26 C 0.09 3.33 3.14 30.67 0.10 3.43 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 O -0.57 -18.43 13.16 -148.98 -1.96 -20.39 16 29 C 0.16 7.27 4.93 86.36 0.43 7.70 16 30 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.41 9.06 6.64 -92.71 -0.62 8.44 16 36 H 0.15 1.86 6.40 -2.91 -0.02 1.84 16 37 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.13 3.16 7.65 -2.91 -0.02 3.14 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.39 9.82 9.08 -74.05 -0.67 9.15 16 44 H 0.07 3.70 6.04 -2.38 -0.01 3.69 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -72.24 367.26 -1.38 -73.62 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.25 Total: 25.70 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 4.63 Total: 14.37 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.01 Total: -107.09 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -3.77 Total: -51.59 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.24 -1.38 -73.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090638728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.576 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds