Wall clock time and date at job start Tue Mar 31 2020 16:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99464 * 2 1 4 4 C 1.53002 * 109.47386 * 270.00099 * 3 2 1 5 5 N 1.46501 * 109.47009 * 180.02562 * 4 3 2 6 6 C 1.34947 * 126.03016 * 125.00354 * 5 4 3 7 7 C 1.35319 * 107.74432 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.92000 * 359.97438 * 7 6 5 9 9 N 1.30846 * 108.20353 * 359.74384 * 8 7 6 10 10 C 1.34775 * 120.00198 * 180.02562 * 2 1 3 11 11 O 1.21358 * 119.99903 * 183.62166 * 10 2 1 12 12 C 1.49312 * 119.99602 * 3.61797 * 10 2 1 13 13 O 1.21399 * 120.00506 * 354.16786 * 12 10 2 14 14 N 1.34777 * 119.99353 * 174.44733 * 12 10 2 15 15 C 1.40298 * 119.99507 * 179.72285 * 14 12 10 16 16 C 1.40722 * 126.10328 * 359.69395 * 15 14 12 17 17 N 1.30877 * 108.37621 * 179.81651 * 16 15 14 18 18 N 1.40059 * 108.43527 * 0.43823 * 17 16 15 19 19 C 1.37296 * 126.05692 * 179.72241 * 18 17 16 20 20 H 1.08001 * 120.00169 * 180.02562 * 19 18 17 21 21 C 1.39005 * 119.99622 * 359.97438 * 19 18 17 22 22 N 1.31279 * 120.00310 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46874 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47267 * 120.00239 * 23 21 19 26 26 H 1.48501 * 109.47088 * 240.00193 * 23 21 19 27 27 C 1.35787 * 126.09644 * 179.97438 * 15 14 12 28 28 H 1.09006 * 109.46824 * 263.98900 * 1 2 3 29 29 H 1.08998 * 109.47310 * 23.98502 * 1 2 3 30 30 H 1.08998 * 109.47035 * 143.99171 * 1 2 3 31 31 H 1.08998 * 109.47452 * 30.01194 * 3 2 1 32 32 H 1.09002 * 109.46326 * 150.00370 * 3 2 1 33 33 H 1.08996 * 109.47220 * 300.00847 * 4 3 2 34 34 H 1.08997 * 109.46706 * 60.00799 * 4 3 2 35 35 H 1.07999 * 126.12975 * 359.97438 * 6 5 4 36 36 H 1.07995 * 126.04512 * 180.02562 * 7 6 5 37 37 H 1.08004 * 125.90325 * 179.97438 * 8 7 6 38 38 H 0.96994 * 120.00110 * 359.72687 * 14 12 10 39 39 H 1.07997 * 125.80887 * 359.97360 * 16 15 14 40 40 H 0.97001 * 120.00152 * 179.97438 * 22 21 19 41 41 H 1.08007 * 126.25280 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 7 3.1853 2.9791 -1.4424 6 6 4.3564 3.2193 -2.0685 7 6 4.6978 4.5059 -1.8253 8 6 3.7009 5.0715 -1.0236 9 7 2.7908 4.1588 -0.7982 10 6 2.1389 -1.1672 -0.0005 11 8 3.3507 -1.1682 0.0659 12 6 1.3946 -2.4589 -0.0827 13 8 0.1813 -2.4640 -0.0423 14 7 2.0700 -3.6197 -0.1961 15 6 1.3708 -4.8339 -0.2675 16 6 -0.0272 -4.9894 -0.2265 17 7 -0.3035 -6.2650 -0.3230 18 7 0.9011 -6.9731 -0.4189 19 6 1.0311 -8.3354 -0.5298 20 1 2.0128 -8.7805 -0.5971 21 6 -0.1009 -9.1418 -0.5543 22 7 -1.2942 -8.6008 -0.4719 23 14 0.0759 -10.9954 -0.7044 24 1 1.5158 -11.3506 -0.7813 25 1 -0.5330 -11.6484 0.4821 26 1 -0.6145 -11.4604 -1.9342 27 6 1.9226 -6.0692 -0.3830 28 1 -0.3633 -0.1076 1.0221 29 1 -0.3634 0.9389 -0.4177 30 1 -0.3633 -0.8313 -0.6042 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1384 0.5138 33 1 3.0414 0.9510 -1.9564 34 1 1.5000 1.8410 -1.9562 35 1 4.9201 2.5115 -2.6581 36 1 5.5830 5.0077 -2.1870 37 1 3.6833 6.0873 -0.6571 38 1 3.0394 -3.6156 -0.2283 39 1 -0.7493 -4.1916 -0.1340 40 1 -2.0841 -9.1635 -0.4893 41 1 2.9774 -6.2951 -0.4370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116337451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:52 Heat of formation + Delta-G solvation = 121.413036 kcal Electronic energy + Delta-G solvation = -27006.155461 eV Core-core repulsion = 22926.456388 eV Total energy + Delta-G solvation = -4079.699073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41450 -40.74839 -39.62956 -38.10748 -36.48038 -34.49504 -33.61267 -33.18285 -30.51343 -30.37516 -29.23743 -28.13635 -26.87259 -25.60469 -24.65548 -22.77377 -21.35649 -21.13518 -20.82580 -19.76072 -19.51098 -17.82422 -17.70255 -17.36872 -16.78093 -16.02047 -15.59680 -15.45010 -15.23704 -15.09077 -14.73249 -14.35440 -14.04834 -13.90370 -13.57151 -13.50119 -13.29599 -13.08959 -13.02141 -12.98866 -12.61601 -12.42150 -11.77886 -11.67113 -11.48864 -11.34142 -11.16323 -10.93491 -10.89901 -10.56051 -10.36134 -9.79255 -9.29762 -9.21328 -8.96906 -8.87656 -8.78602 -8.18482 -6.84183 -6.65202 -4.32737 1.48758 1.63484 2.00501 2.56053 2.59400 2.88324 3.00975 3.06863 3.20960 3.59072 3.63595 3.80210 4.16504 4.30505 4.43260 4.52243 4.58745 4.72462 4.87772 4.90706 4.93630 5.05659 5.12734 5.33102 5.46078 5.49852 5.62270 5.73712 5.92986 6.10670 6.16437 6.29566 6.36934 6.67558 6.70301 6.83665 6.84946 6.96865 7.11347 7.41705 7.57641 7.76445 8.00505 8.12363 8.41011 8.63344 9.25775 9.54336 10.30566 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.039415 B = 0.001925 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.219013 B =14538.400357 C =14969.722440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.590 5.590 3 C 0.105 3.895 4 C 0.119 3.881 5 N -0.369 5.369 6 C 0.059 3.941 7 C -0.278 4.278 8 C 0.044 3.956 9 N -0.298 5.298 10 C 0.514 3.486 11 O -0.527 6.527 12 C 0.484 3.516 13 O -0.515 6.515 14 N -0.581 5.581 15 C -0.071 4.071 16 C -0.025 4.025 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.321 4.321 20 H 0.119 0.881 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.077 4.077 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.147 0.853 37 H 0.183 0.817 38 H 0.409 0.591 39 H 0.178 0.822 40 H 0.276 0.724 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 19.300 -2.451 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.324 5.324 3 C -0.019 4.019 4 C -0.004 4.004 5 N -0.152 5.152 6 C -0.087 4.087 7 C -0.307 4.307 8 C -0.142 4.142 9 N -0.119 5.119 10 C 0.297 3.703 11 O -0.403 6.403 12 C 0.265 3.735 13 O -0.393 6.393 14 N -0.223 5.223 15 C -0.177 4.177 16 C -0.201 4.201 17 N -0.091 5.091 18 N 0.096 4.904 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.229 4.229 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.191 0.809 36 H 0.165 0.835 37 H 0.200 0.800 38 H 0.244 0.756 39 H 0.195 0.805 40 H 0.086 0.914 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.765 17.928 -1.845 18.923 hybrid contribution 2.114 0.118 -0.476 2.171 sum 7.880 18.046 -2.321 19.827 Atomic orbital electron populations 1.22536 0.76791 1.04389 1.04181 1.47600 1.08603 1.04402 1.71775 1.21707 0.99442 0.85187 0.95551 1.22112 0.97870 0.81037 0.99357 1.48601 1.17463 1.09616 1.39496 1.22649 0.88924 0.98385 0.98761 1.21522 1.04321 0.95001 1.09866 1.23907 0.92581 0.99376 0.98304 1.77339 1.23688 0.91620 1.19287 1.20429 0.87350 0.85404 0.77115 1.90733 1.13663 1.87407 1.48494 1.19518 0.87651 0.84417 0.81883 1.90559 1.13088 1.85601 1.50101 1.42157 1.09967 1.03643 1.66513 1.17243 0.92035 0.83406 1.25002 1.24147 0.93162 0.95569 1.07225 1.78270 1.03430 1.01930 1.25502 1.44580 1.02582 1.05132 1.38128 1.19985 0.95643 0.77130 1.52613 0.86354 1.25673 0.94541 1.01556 0.95379 1.70210 0.97896 1.36411 1.34776 0.85737 0.79397 0.80323 0.78564 1.18600 1.19829 1.19839 1.21308 0.94104 0.88272 1.19173 0.91835 0.91751 0.86627 0.88545 0.88965 0.88113 0.89243 0.80907 0.83516 0.80046 0.75624 0.80514 0.91358 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 9.55 59.85 0.57 1.23 16 2 N -0.59 -6.89 2.87 -182.13 -0.52 -7.42 16 3 C 0.10 1.05 5.60 -4.04 -0.02 1.03 16 4 C 0.12 1.06 6.83 -4.04 -0.03 1.03 16 5 N -0.37 -3.64 3.68 -61.37 -0.23 -3.87 16 6 C 0.06 0.50 11.45 -17.22 -0.20 0.30 16 7 C -0.28 -2.23 10.80 -40.01 -0.43 -2.66 16 8 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 9 N -0.30 -3.25 12.43 30.63 0.38 -2.87 16 10 C 0.51 7.43 7.73 -11.65 -0.09 7.34 16 11 O -0.53 -8.26 16.04 5.49 0.09 -8.17 16 12 C 0.48 8.24 7.74 -11.65 -0.09 8.15 16 13 O -0.52 -9.52 10.28 5.45 0.06 -9.46 16 14 N -0.58 -10.44 5.45 -10.45 -0.06 -10.50 16 15 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 16 C -0.03 -0.63 10.85 -17.02 -0.18 -0.82 16 17 N -0.26 -7.29 10.39 30.81 0.32 -6.97 16 18 N -0.14 -3.66 3.73 -11.40 -0.04 -3.70 16 19 C -0.32 -8.25 10.25 -14.82 -0.15 -8.40 16 20 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 21 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 22 N -0.77 -20.78 11.81 55.50 0.66 -20.13 16 23 Si 0.94 18.39 29.55 -169.99 -5.02 13.36 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 27 C -0.08 -1.76 11.50 -16.38 -0.19 -1.95 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.12 1.46 5.35 -51.94 -0.28 1.18 16 31 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.09 1.06 7.37 -51.93 -0.38 0.67 16 33 H 0.10 0.85 8.07 -51.93 -0.42 0.44 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.41 6.34 8.31 -40.82 -0.34 6.00 16 39 H 0.18 4.23 5.92 -52.49 -0.31 3.92 16 40 H 0.28 6.80 8.31 -40.82 -0.34 6.47 16 41 H 0.15 2.84 8.06 -52.48 -0.42 2.41 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -32.89 360.04 -5.29 -38.19 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -4.65 Total: 11.77 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.70 Total: 4.34 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.51 Total: -55.45 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.14 Total: -17.63 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.89 -5.29 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116337451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.598 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds