Wall clock time and date at job start Tue Mar 31 2020 16:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46939 * 2 1 4 4 C 1.34232 * 116.99760 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00033 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00031 * 179.97438 * 4 3 2 7 7 N 1.46495 * 109.47188 * 180.02562 * 6 4 3 8 8 C 1.39601 * 120.00325 * 204.99934 * 7 6 4 9 9 C 1.39460 * 120.37908 * 179.97438 * 8 7 6 10 10 C 1.38182 * 118.46573 * 179.97438 * 9 8 7 11 11 C 1.39596 * 119.14267 * 359.97438 * 10 9 8 12 12 C 1.43197 * 119.66562 * 179.97438 * 11 10 9 13 13 C 9.88528 * 162.24348 * 236.07293 * 3 1 2 14 14 Si 9.40804 * 157.13033 * 241.49441 * 6 1 2 15 15 C 1.86300 * 109.47034 * 77.84877 * 14 13 12 16 16 C 1.86294 * 109.47039 * 197.84440 * 14 13 12 17 17 C 1.86299 * 109.47351 * 317.84750 * 14 13 12 18 18 N 1.32805 * 120.66941 * 0.02562 * 11 10 9 19 19 C 1.31646 * 121.66930 * 359.72242 * 18 11 10 20 20 C 1.50702 * 109.46955 * 300.00116 * 6 4 3 21 21 N 1.27944 * 120.00235 * 125.00378 * 20 6 4 22 22 Si 1.86803 * 120.00071 * 304.72319 * 20 6 4 23 23 H 1.48494 * 109.47228 * 180.27704 * 22 20 6 24 24 H 1.48506 * 109.47130 * 300.27892 * 22 20 6 25 25 H 1.48498 * 109.47039 * 60.27174 * 22 20 6 26 26 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47196 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.47047 * 60.00558 * 1 2 3 29 29 H 1.09001 * 109.47196 * 239.99776 * 2 1 3 30 30 H 1.08996 * 109.46671 * 119.99903 * 2 1 3 31 31 H 1.08997 * 109.47524 * 59.99825 * 6 4 3 32 32 H 0.97001 * 120.00079 * 25.00049 * 7 6 4 33 33 H 1.08002 * 120.76455 * 0.02562 * 9 8 7 34 34 H 1.08004 * 120.42581 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47470 * 59.99543 * 15 14 13 36 36 H 1.09004 * 109.47093 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.47197 * 299.99595 * 15 14 13 38 38 H 1.09000 * 109.47140 * 60.00064 * 16 14 13 39 39 H 1.08999 * 109.47364 * 179.97438 * 16 14 13 40 40 H 1.09008 * 109.47571 * 300.00450 * 16 14 13 41 41 H 1.08998 * 109.47289 * 59.99722 * 17 14 13 42 42 H 1.08991 * 109.47139 * 180.02562 * 17 14 13 43 43 H 1.09000 * 109.46798 * 299.99917 * 17 14 13 44 44 H 1.08007 * 119.60114 * 180.26508 * 19 18 11 45 45 H 0.97005 * 119.99714 * 359.71919 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3837 2.8607 0.0001 8 6 6.1381 3.9185 0.5106 9 6 7.5312 3.8536 0.5151 10 6 8.2387 4.9233 1.0294 11 6 7.5399 6.0262 1.5235 12 6 8.2619 7.1406 2.0594 13 6 8.8540 8.0530 2.5015 14 14 9.8120 9.5314 3.2130 15 6 10.7850 10.3532 1.8534 16 6 8.6124 10.7546 3.9446 17 6 10.9778 8.9361 4.5386 18 7 6.2123 6.0518 1.5024 19 6 5.5093 5.0512 1.0149 20 6 3.4568 3.6724 -1.2311 21 7 2.8602 4.7984 -1.1172 22 14 3.7598 2.9431 -2.9240 23 1 3.2173 3.8570 -3.9611 24 1 5.2195 2.7676 -3.1334 25 1 3.0836 1.6247 -3.0233 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5844 3.4701 0.8894 32 1 5.8282 2.0749 -0.3545 33 1 8.0451 2.9876 0.1249 34 1 9.3185 4.9067 1.0480 35 1 10.1030 10.7015 1.0778 36 1 11.3343 11.2017 2.2615 37 1 11.4870 9.6376 1.4253 38 1 8.0430 10.2738 4.7401 39 1 9.1619 11.6026 4.3532 40 1 7.9301 11.1029 3.1690 41 1 11.6797 8.2204 4.1105 42 1 11.5271 9.7843 4.9470 43 1 10.4085 8.4553 5.3340 44 1 4.4308 5.1092 1.0104 45 1 2.7029 5.1771 -0.2381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170371039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:16 Heat of formation + Delta-G solvation = -11.053298 kcal Electronic energy + Delta-G solvation = -24857.507777 eV Core-core repulsion = 21192.862834 eV Total energy + Delta-G solvation = -3664.644943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14954 -41.24136 -38.77815 -37.71558 -36.04009 -33.93654 -33.31614 -32.88065 -30.92374 -29.56612 -28.57984 -28.40603 -28.38726 -25.12697 -24.68903 -23.93178 -23.09757 -21.88875 -19.89339 -19.69993 -18.62741 -18.28765 -17.77861 -17.40221 -16.79066 -16.51641 -16.09523 -15.73269 -15.31989 -15.13180 -14.97156 -14.44764 -14.27013 -14.21093 -13.97859 -13.97137 -13.92368 -13.70373 -13.45689 -13.30628 -13.28544 -13.15581 -13.07449 -13.04752 -12.85782 -12.72049 -12.25356 -12.11528 -11.98925 -11.74610 -11.72758 -11.68189 -11.63312 -10.86641 -10.83249 -10.79371 -10.47166 -10.35272 -8.69480 -0.13513 0.21142 0.42254 0.78358 0.91036 1.04696 1.41406 1.43562 1.53888 1.61325 1.66957 1.76965 2.21552 2.34744 2.36926 2.43412 3.14082 3.20413 3.26324 3.36521 3.56271 3.64975 3.71447 3.81838 3.82602 4.02179 4.14931 4.28232 4.39663 4.47706 4.54615 4.68360 4.72527 4.73215 4.76789 4.77124 4.79358 4.79764 4.81778 4.87470 5.01879 5.16300 5.30709 5.46510 5.55644 5.57943 5.71890 6.19030 6.35783 6.48313 6.76625 6.96802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.061 3.939 3 O -0.348 6.348 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.135 3.865 7 N -0.714 5.714 8 C 0.172 3.828 9 C -0.140 4.140 10 C -0.091 4.091 11 C 0.162 3.838 12 C -0.124 4.124 13 C -0.378 4.378 14 Si 1.147 2.853 15 C -0.452 4.452 16 C -0.453 4.453 17 C -0.452 4.452 18 N -0.424 5.424 19 C 0.033 3.967 20 C -0.041 4.041 21 N -0.588 5.588 22 Si 1.044 2.956 23 H -0.232 1.232 24 H -0.239 1.239 25 H -0.243 1.243 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.418 0.582 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -1.804 -0.296 1.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.264 6.264 4 C 0.305 3.695 5 O -0.373 6.373 6 C 0.024 3.976 7 N -0.349 5.349 8 C 0.068 3.932 9 C -0.170 4.170 10 C -0.112 4.112 11 C 0.025 3.975 12 C -0.125 4.125 13 C -0.415 4.415 14 Si 1.332 2.668 15 C -0.560 4.560 16 C -0.561 4.561 17 C -0.560 4.560 18 N -0.132 5.132 19 C -0.132 4.132 20 C -0.289 4.289 21 N -0.200 5.200 22 Si 0.856 3.144 23 H -0.154 1.154 24 H -0.162 1.162 25 H -0.167 1.167 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.257 0.743 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.164 0.836 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.665 -1.120 -1.460 1.957 hybrid contribution 0.357 -1.599 1.236 2.052 sum -0.308 -2.719 -0.225 2.746 Atomic orbital electron populations 1.21848 0.91866 1.03575 1.03918 1.23236 0.95939 0.78851 1.03239 1.86489 1.22858 1.33767 1.83274 1.23033 0.81795 0.91348 0.73317 1.90716 1.60345 1.42037 1.44230 1.20789 0.83135 0.92339 1.01326 1.44141 1.01992 1.20385 1.68387 1.18862 0.91617 0.88973 0.93776 1.21007 0.91210 1.00642 1.04107 1.21890 1.01419 0.92057 0.95813 1.16562 0.88217 0.91806 1.00908 1.20249 0.97796 0.95168 0.99261 1.36072 1.01862 1.03327 1.00243 0.76977 0.64159 0.60059 0.65594 1.26119 1.08969 1.07720 1.13210 1.26118 1.11439 1.11219 1.07303 1.26116 1.10747 1.06581 1.12564 1.67556 1.07136 1.26632 1.11859 1.22154 0.99547 0.89438 1.02026 1.32254 0.93985 0.95276 1.07427 1.69391 1.07503 1.09072 1.34039 0.83838 0.81621 0.78944 0.70044 1.15351 1.16170 1.16685 0.89642 0.91218 0.91118 0.90542 0.90621 0.85850 0.74300 0.83718 0.83889 0.90878 0.90422 0.90906 0.90889 0.90459 0.90849 0.90903 0.90421 0.90904 0.83583 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.41 10.29 37.16 0.38 0.79 16 2 C 0.06 -0.06 6.19 37.16 0.23 0.16 16 3 O -0.35 -0.11 10.14 -39.26 -0.40 -0.51 16 4 C 0.47 0.30 6.12 36.00 0.22 0.52 16 5 O -0.49 -1.17 15.59 -18.76 -0.29 -1.47 16 6 C 0.13 -0.08 2.36 -70.24 -0.17 -0.24 16 7 N -0.71 0.26 4.69 -54.27 -0.25 0.00 16 8 C 0.17 0.17 6.66 -83.58 -0.56 -0.38 16 9 C -0.14 -0.07 10.03 -39.15 -0.39 -0.46 16 10 C -0.09 -0.17 9.78 -39.10 -0.38 -0.55 16 11 C 0.16 0.76 6.59 -85.01 -0.56 0.21 16 12 C -0.12 -0.62 13.44 -38.84 -0.52 -1.14 16 13 C -0.38 -1.05 12.14 29.55 0.36 -0.69 16 14 Si 1.15 -2.24 14.26 -169.99 -2.42 -4.67 16 15 C -0.45 0.73 8.65 101.05 0.87 1.61 16 16 C -0.45 0.53 8.65 101.05 0.87 1.40 16 17 C -0.45 0.77 8.65 101.05 0.87 1.64 16 18 N -0.42 -2.19 10.27 -10.97 -0.11 -2.30 16 19 C 0.03 0.08 10.32 -17.34 -0.18 -0.10 16 20 C -0.04 0.00 4.89 -13.90 -0.07 -0.07 16 21 N -0.59 -0.35 13.36 56.23 0.75 0.40 16 22 Si 1.04 -0.21 28.61 -169.99 -4.86 -5.07 16 23 H -0.23 -0.16 7.11 56.52 0.40 0.25 16 24 H -0.24 0.12 7.11 56.52 0.40 0.52 16 25 H -0.24 0.08 7.11 56.52 0.40 0.48 16 26 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 27 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 29 H 0.08 -0.10 8.13 -51.93 -0.42 -0.52 16 30 H 0.08 -0.10 8.13 -51.93 -0.42 -0.52 16 31 H 0.12 -0.24 6.21 -51.93 -0.32 -0.56 16 32 H 0.42 -0.46 7.81 -40.82 -0.32 -0.78 16 33 H 0.15 -0.32 8.06 -52.49 -0.42 -0.74 16 34 H 0.14 -0.04 8.06 -52.48 -0.42 -0.47 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 39 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 40 H 0.07 -0.05 7.96 -51.92 -0.41 -0.46 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 42 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 44 H 0.15 0.06 5.11 -52.48 -0.27 -0.20 16 45 H 0.33 -0.26 7.57 -40.82 -0.31 -0.57 16 LS Contribution 398.17 15.07 6.00 6.00 Total: 0.00 -7.43 398.17 -7.30 -14.73 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -6.69 Total: -9.82 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.99 Total: 2.70 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: 0.38 Total: -1.90 kcal Atomic # 8 Polarization: -1.28 SS G_CDS: -0.69 Total: -1.98 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: -7.29 Total: -9.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -7.43 -7.30 -14.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170371039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -7.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds