Wall clock time and date at job start Tue Mar 31 2020 17:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00326 * 2 1 4 4 H 1.48504 * 109.47308 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47276 * 120.00196 * 3 2 1 7 7 C 1.38815 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00284 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99969 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.94978 * 23.59007 * 10 9 7 12 12 C 1.53949 * 113.66603 * 252.18953 * 10 9 7 13 13 C 1.53949 * 87.29375 * 220.79098 * 12 10 9 14 14 H 1.09004 * 113.65938 * 139.20663 * 13 12 10 15 15 N 1.46503 * 113.66118 * 270.25797 * 13 12 10 16 16 C 1.34773 * 119.99843 * 252.18898 * 15 13 12 17 17 O 1.21282 * 120.00636 * 354.99262 * 16 15 13 18 18 C 1.50702 * 119.99954 * 174.99494 * 16 15 13 19 19 C 1.53005 * 115.54962 * 279.08828 * 18 16 15 20 20 F 1.39896 * 109.47140 * 61.24682 * 19 18 16 21 21 F 1.39896 * 109.46991 * 181.24985 * 19 18 16 22 22 F 1.39901 * 109.46775 * 301.24584 * 19 18 16 23 23 C 1.53002 * 117.49957 * 133.37574 * 18 16 15 24 24 C 1.53002 * 117.49723 * 64.75228 * 18 16 15 25 25 C 1.52908 * 113.66516 * 154.99576 * 10 9 7 26 26 C 1.52898 * 121.14366 * 265.09849 * 25 10 9 27 27 C 1.53949 * 86.88360 * 100.85985 * 26 25 10 28 28 C 1.53107 * 121.14749 * 13.57325 * 25 10 9 29 29 H 0.97000 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00298 * 0.02562 * 9 7 2 31 31 H 1.09003 * 113.57541 * 335.39407 * 12 10 9 32 32 H 1.08995 * 113.58445 * 106.18649 * 12 10 9 33 33 H 0.96995 * 119.99773 * 72.19426 * 15 13 12 34 34 H 1.08994 * 117.49705 * 0.02562 * 23 18 16 35 35 H 1.08994 * 117.49664 * 145.02187 * 23 18 16 36 36 H 1.09001 * 117.50209 * 214.98336 * 24 18 16 37 37 H 1.09005 * 117.50052 * 359.97438 * 24 18 16 38 38 H 1.09008 * 113.66434 * 346.34377 * 26 25 10 39 39 H 1.08999 * 113.66682 * 215.37542 * 26 25 10 40 40 H 1.09001 * 113.58186 * 139.29606 * 27 26 25 41 41 H 1.09003 * 113.58076 * 270.00916 * 27 26 25 42 42 H 1.09000 * 113.57787 * 144.66554 * 28 25 10 43 43 H 1.09004 * 113.79604 * 13.65034 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0670 -3.5650 0.4012 12 6 1.9933 -4.4076 -1.3430 13 6 1.8249 -5.7024 -0.5274 14 1 1.0937 -6.3926 -0.9484 15 7 3.0932 -6.3517 -0.1865 16 6 3.4510 -7.4962 -0.8017 17 8 2.6842 -8.0371 -1.5701 18 6 4.8040 -8.1039 -0.5349 19 6 5.9690 -7.4879 -1.3123 20 9 6.0949 -6.1371 -0.9710 21 9 7.1520 -8.1622 -0.9915 22 9 5.7253 -7.6013 -2.6852 23 6 4.8599 -9.6061 -0.2500 24 6 5.0867 -8.6035 0.8833 25 6 1.2655 -4.8229 0.5914 26 6 1.4194 -5.2188 2.0602 27 6 0.1026 -4.4631 2.3148 28 6 -0.2420 -4.7132 0.8354 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 -0.0005 31 1 1.1195 -4.1535 -1.9430 32 1 2.9231 -4.3675 -1.9103 33 1 3.6752 -5.9580 0.4821 34 1 3.9182 -10.1549 -0.2560 35 1 5.7268 -10.1559 -0.6165 36 1 6.1028 -8.4938 1.2625 37 1 4.2943 -8.4923 1.6235 38 1 2.2841 -4.7673 2.5468 39 1 1.3481 -6.2925 2.2338 40 1 -0.5649 -4.9721 3.0101 41 1 0.2443 -3.4102 2.5589 42 1 -0.7806 -5.6450 0.6631 43 1 -0.7060 -3.8581 0.3437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203432884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:26 Heat of formation + Delta-G solvation = -103.238606 kcal Electronic energy + Delta-G solvation = -29985.285701 eV Core-core repulsion = 25425.235854 eV Total energy + Delta-G solvation = -4560.049847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.36390 -47.92273 -47.79366 -40.81563 -39.57368 -36.95370 -35.09964 -34.09951 -32.27783 -29.90466 -27.66412 -25.51827 -25.07269 -24.16416 -23.68445 -23.12919 -21.96227 -20.71536 -20.09971 -18.97197 -18.56651 -18.45943 -17.89447 -17.00175 -16.57772 -16.03212 -15.31220 -15.17138 -14.86228 -14.75374 -14.68628 -14.55193 -14.27068 -14.16015 -13.97887 -13.94884 -13.76361 -13.50909 -12.79725 -12.57999 -12.50455 -12.14763 -12.04670 -11.84136 -11.77310 -11.44354 -11.30018 -11.25810 -10.88921 -10.83828 -10.64450 -10.22157 -10.21602 -10.04326 -9.91476 -9.66803 -9.42641 -8.87086 -8.80540 -6.99940 -5.81783 -3.10440 1.94717 2.56767 2.63435 2.91948 3.40959 3.41408 3.46598 3.46974 3.73742 3.92738 4.15005 4.33990 4.45913 4.55336 4.73272 4.95458 4.97786 5.03027 5.04760 5.18671 5.24673 5.28820 5.40826 5.48097 5.65817 5.77015 5.92079 5.95984 6.01654 6.07338 6.09789 6.27208 6.37600 6.41469 6.54003 6.60132 6.84296 6.88320 6.99791 7.41250 7.66145 8.02344 8.36939 9.48648 10.05164 10.40133 11.40333 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003554 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.854491 B = 7875.810970 C = 8968.080274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.192 3.808 11 H 0.076 0.924 12 C -0.175 4.175 13 C 0.126 3.874 14 H 0.099 0.901 15 N -0.688 5.688 16 C 0.557 3.443 17 O -0.519 6.519 18 C -0.240 4.240 19 C 0.500 3.500 20 F -0.171 7.171 21 F -0.177 7.177 22 F -0.170 7.170 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.109 4.109 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.404 0.596 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -19.697 3.640 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.345 5.345 10 C 0.079 3.921 11 H 0.094 0.906 12 C -0.217 4.217 13 C 0.021 3.979 14 H 0.117 0.883 15 N -0.337 5.337 16 C 0.340 3.660 17 O -0.394 6.394 18 C -0.245 4.245 19 C 0.446 3.554 20 F -0.152 7.152 21 F -0.158 7.158 22 F -0.152 7.152 23 C -0.153 4.153 24 C -0.171 4.171 25 C -0.123 4.123 26 C -0.163 4.163 27 C -0.168 4.168 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.966 -19.838 3.057 21.984 hybrid contribution 0.723 1.333 -0.016 1.516 sum 9.689 -18.505 3.041 21.108 Atomic orbital electron populations 1.69641 1.05102 1.25899 1.57256 1.24732 0.95482 0.97687 1.02668 0.86289 0.78573 0.83565 0.77874 1.21234 1.21692 1.21262 1.19237 0.91016 0.84178 1.43224 0.91220 1.42381 1.05889 0.99528 1.86723 1.21279 0.94355 0.84610 0.91827 0.90567 1.24302 1.02124 0.95134 1.00181 1.21826 0.84627 0.93648 0.97771 0.88343 1.45529 1.22460 1.23814 1.41916 1.18624 0.85521 0.80948 0.80945 1.90735 1.51959 1.61266 1.35413 1.22571 0.94364 1.03009 1.04568 1.18952 0.81971 0.76441 0.78083 1.93249 1.96190 1.33768 1.91980 1.93175 1.49867 1.80187 1.92592 1.93246 1.94169 1.95722 1.32029 1.23163 1.05714 0.87289 0.99102 1.23301 1.05293 0.99950 0.88603 1.23629 0.97790 0.97925 0.92955 1.22639 0.98670 0.99179 0.95850 1.22734 0.96520 1.01500 0.96066 1.22486 0.93696 1.01685 0.96850 0.93380 0.77678 0.89370 0.92170 0.76128 0.86155 0.86476 0.86355 0.86223 0.91683 0.91025 0.92462 0.89128 0.90769 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -16.73 5.32 -52.99 -0.28 -17.01 16 10 C 0.19 3.59 4.27 -67.48 -0.29 3.30 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.18 -3.08 7.68 -25.75 -0.20 -3.28 16 13 C 0.13 1.88 4.16 -67.48 -0.28 1.60 16 14 H 0.10 1.56 7.42 -51.93 -0.39 1.17 16 15 N -0.69 -8.75 5.04 -53.37 -0.27 -9.02 16 16 C 0.56 7.36 6.79 -10.99 -0.07 7.29 16 17 O -0.52 -8.69 16.59 5.56 0.09 -8.59 16 18 C -0.24 -2.40 1.99 -155.65 -0.31 -2.71 16 19 C 0.50 5.59 3.05 37.16 0.11 5.71 16 20 F -0.17 -2.08 17.24 2.25 0.04 -2.04 16 21 F -0.18 -1.73 15.89 2.25 0.04 -1.69 16 22 F -0.17 -2.27 17.20 2.25 0.04 -2.23 16 23 C -0.12 -0.84 9.60 -26.73 -0.26 -1.10 16 24 C -0.13 -0.86 9.68 -26.73 -0.26 -1.12 16 25 C -0.12 -1.84 0.93 -154.61 -0.14 -1.98 16 26 C -0.13 -1.68 7.48 -26.29 -0.20 -1.87 16 27 C -0.13 -1.93 8.08 -25.75 -0.21 -2.14 16 28 C -0.11 -1.68 7.47 -26.18 -0.20 -1.88 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 9.70 5.93 -40.82 -0.24 9.46 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 4.48 8.62 -40.82 -0.35 4.13 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 0.69 7.74 -51.93 -0.40 0.29 16 36 H 0.12 0.59 7.82 -51.93 -0.41 0.19 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.42 6.43 -51.93 -0.33 1.09 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -30.78 369.34 -7.51 -38.29 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.89 Total: 11.58 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.54 Total: -5.25 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.17 Total: -52.59 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.78 -7.51 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203432884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.946 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds