Wall clock time and date at job start Tue Mar 31 2020 17:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00326 * 2 1 4 4 H 1.48504 * 109.47308 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47276 * 120.00196 * 3 2 1 7 7 C 1.38815 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00284 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99969 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.94978 * 23.59007 * 10 9 7 12 12 C 1.53949 * 113.66603 * 252.18953 * 10 9 7 13 13 C 1.53949 * 87.29375 * 220.79098 * 12 10 9 14 14 H 1.09004 * 113.65938 * 139.20663 * 13 12 10 15 15 N 1.46503 * 113.66118 * 270.25797 * 13 12 10 16 16 C 1.34773 * 119.99843 * 252.18898 * 15 13 12 17 17 O 1.21282 * 120.00636 * 354.99262 * 16 15 13 18 18 C 1.50702 * 119.99954 * 174.99494 * 16 15 13 19 19 C 1.53005 * 115.54962 * 279.08828 * 18 16 15 20 20 F 1.39896 * 109.47140 * 61.24682 * 19 18 16 21 21 F 1.39896 * 109.46991 * 181.24985 * 19 18 16 22 22 F 1.39901 * 109.46775 * 301.24584 * 19 18 16 23 23 C 1.53002 * 117.49957 * 133.37574 * 18 16 15 24 24 C 1.53002 * 117.49723 * 64.75228 * 18 16 15 25 25 C 1.52908 * 113.66516 * 154.99576 * 10 9 7 26 26 C 1.52898 * 121.14366 * 265.09849 * 25 10 9 27 27 C 1.53949 * 86.88360 * 100.85985 * 26 25 10 28 28 C 1.53107 * 121.14749 * 13.57325 * 25 10 9 29 29 H 0.97000 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00298 * 0.02562 * 9 7 2 31 31 H 1.09003 * 113.57541 * 335.39407 * 12 10 9 32 32 H 1.08995 * 113.58445 * 106.18649 * 12 10 9 33 33 H 0.96995 * 119.99773 * 72.19426 * 15 13 12 34 34 H 1.08994 * 117.49705 * 0.02562 * 23 18 16 35 35 H 1.08994 * 117.49664 * 145.02187 * 23 18 16 36 36 H 1.09001 * 117.50209 * 214.98336 * 24 18 16 37 37 H 1.09005 * 117.50052 * 359.97438 * 24 18 16 38 38 H 1.09008 * 113.66434 * 346.34377 * 26 25 10 39 39 H 1.08999 * 113.66682 * 215.37542 * 26 25 10 40 40 H 1.09001 * 113.58186 * 139.29606 * 27 26 25 41 41 H 1.09003 * 113.58076 * 270.00916 * 27 26 25 42 42 H 1.09000 * 113.57787 * 144.66554 * 28 25 10 43 43 H 1.09004 * 113.79604 * 13.65034 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0670 -3.5650 0.4012 12 6 1.9933 -4.4076 -1.3430 13 6 1.8249 -5.7024 -0.5274 14 1 1.0937 -6.3926 -0.9484 15 7 3.0932 -6.3517 -0.1865 16 6 3.4510 -7.4962 -0.8017 17 8 2.6842 -8.0371 -1.5701 18 6 4.8040 -8.1039 -0.5349 19 6 5.9690 -7.4879 -1.3123 20 9 6.0949 -6.1371 -0.9710 21 9 7.1520 -8.1622 -0.9915 22 9 5.7253 -7.6013 -2.6852 23 6 4.8599 -9.6061 -0.2500 24 6 5.0867 -8.6035 0.8833 25 6 1.2655 -4.8229 0.5914 26 6 1.4194 -5.2188 2.0602 27 6 0.1026 -4.4631 2.3148 28 6 -0.2420 -4.7132 0.8354 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 -0.0005 31 1 1.1195 -4.1535 -1.9430 32 1 2.9231 -4.3675 -1.9103 33 1 3.6752 -5.9580 0.4821 34 1 3.9182 -10.1549 -0.2560 35 1 5.7268 -10.1559 -0.6165 36 1 6.1028 -8.4938 1.2625 37 1 4.2943 -8.4923 1.6235 38 1 2.2841 -4.7673 2.5468 39 1 1.3481 -6.2925 2.2338 40 1 -0.5649 -4.9721 3.0101 41 1 0.2443 -3.4102 2.5589 42 1 -0.7806 -5.6450 0.6631 43 1 -0.7060 -3.8581 0.3437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203432884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:25 Heat of formation + Delta-G solvation = -121.840681 kcal Electronic energy + Delta-G solvation = -29986.092348 eV Core-core repulsion = 25425.235854 eV Total energy + Delta-G solvation = -4560.856493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.23789 -48.76695 -48.72784 -42.03610 -40.64526 -37.74812 -36.38689 -35.81604 -33.80364 -31.72598 -28.47348 -26.76710 -26.62530 -25.56348 -24.96532 -23.68289 -23.37755 -21.78768 -21.26293 -19.92776 -19.59963 -19.44989 -19.31495 -18.53975 -17.56172 -17.14246 -16.73402 -16.36020 -16.18037 -15.88306 -15.62866 -15.60040 -15.43684 -15.17259 -15.15593 -14.94299 -14.88573 -14.65044 -14.21645 -13.93312 -13.55767 -13.40958 -13.33860 -13.15782 -12.86957 -12.76146 -12.60325 -12.52159 -12.20633 -12.01415 -11.92459 -11.90445 -11.86787 -11.34586 -11.25958 -11.00648 -10.90067 -10.69585 -10.01814 -8.95839 -7.93421 -5.20770 1.00186 1.47524 1.49460 1.55402 1.70015 1.79099 2.14201 2.56711 2.62417 2.89784 3.20346 3.33513 3.37375 3.46216 3.60639 3.66956 3.72837 3.78905 3.91775 4.03200 4.11982 4.25863 4.41544 4.56759 4.58730 4.62317 4.72978 4.82304 4.85837 4.89407 4.98815 5.01642 5.07048 5.14572 5.16450 5.23624 5.48908 5.57703 5.59529 5.66653 6.28505 6.37300 7.00043 7.35970 8.12624 8.36163 9.29424 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003554 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.854491 B = 7875.810970 C = 8968.080274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.179 3.821 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.147 3.853 14 H 0.095 0.905 15 N -0.681 5.681 16 C 0.559 3.441 17 O -0.557 6.557 18 C -0.263 4.263 19 C 0.499 3.501 20 F -0.180 7.180 21 F -0.166 7.166 22 F -0.188 7.188 23 C -0.109 4.109 24 C -0.107 4.107 25 C -0.111 4.111 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.378 0.622 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.414 0.586 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -21.823 5.333 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.357 5.357 10 C 0.068 3.932 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.041 3.959 14 H 0.113 0.887 15 N -0.330 5.330 16 C 0.344 3.656 17 O -0.435 6.435 18 C -0.268 4.268 19 C 0.444 3.556 20 F -0.161 7.161 21 F -0.148 7.148 22 F -0.170 7.170 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.113 4.113 26 C -0.145 4.145 27 C -0.168 4.168 28 C -0.150 4.150 29 H 0.059 0.941 30 H 0.212 0.788 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.706 -22.003 4.770 24.930 hybrid contribution 0.245 1.918 -0.591 2.022 sum 10.951 -20.084 4.179 23.254 Atomic orbital electron populations 1.69797 1.06490 1.26000 1.59468 1.25464 0.96247 1.00779 1.03806 0.85309 0.77262 0.79692 0.78080 1.20876 1.22373 1.20260 1.19622 0.91413 0.85401 1.41034 0.90775 1.42518 1.05603 1.00509 1.87051 1.21556 0.94746 0.83771 0.93110 0.90250 1.24172 1.01024 0.97085 0.99516 1.21465 0.85576 0.92394 0.96466 0.88692 1.45433 1.21751 1.23697 1.42114 1.19082 0.86362 0.80390 0.79789 1.90717 1.53597 1.62308 1.36889 1.22434 0.91831 1.04760 1.07748 1.19118 0.82800 0.76211 0.77428 1.93229 1.96306 1.34623 1.91943 1.93190 1.49308 1.79867 1.92405 1.93211 1.94345 1.95781 1.33646 1.23352 1.06415 0.85797 0.99072 1.23560 1.06943 0.96861 0.86976 1.23360 0.97469 0.95710 0.94755 1.22617 0.97871 1.00741 0.93239 1.22646 0.98205 1.00004 0.95965 1.22552 0.93692 1.01555 0.97207 0.94104 0.78834 0.91150 0.92838 0.74887 0.86156 0.85012 0.84404 0.84661 0.91127 0.87962 0.90007 0.92590 0.88292 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.72 -34.90 5.32 -321.56 -1.71 -36.61 16 10 C 0.18 6.68 4.27 45.28 0.19 6.88 16 11 H 0.08 2.90 8.10 -2.38 -0.02 2.88 16 12 C -0.18 -6.26 7.68 31.23 0.24 -6.02 16 13 C 0.15 4.22 4.16 45.28 0.19 4.41 16 14 H 0.10 2.90 7.42 -2.38 -0.02 2.88 16 15 N -0.68 -15.97 5.04 -441.14 -2.23 -18.20 16 16 C 0.56 13.80 6.79 87.66 0.60 14.40 16 17 O -0.56 -18.13 16.59 -3.04 -0.05 -18.18 16 18 C -0.26 -4.61 1.99 -52.92 -0.11 -4.72 16 19 C 0.50 10.31 3.05 71.98 0.22 10.53 16 20 F -0.18 -4.13 17.24 44.97 0.78 -3.35 16 21 F -0.17 -2.85 15.89 44.97 0.71 -2.13 16 22 F -0.19 -4.90 17.20 44.97 0.77 -4.13 16 23 C -0.11 -1.25 9.60 30.60 0.29 -0.95 16 24 C -0.11 -0.92 9.68 30.60 0.30 -0.62 16 25 C -0.11 -3.25 0.93 -52.25 -0.05 -3.30 16 26 C -0.11 -2.54 7.48 30.88 0.23 -2.31 16 27 C -0.13 -3.68 8.08 31.23 0.25 -3.43 16 28 C -0.11 -3.38 7.47 30.95 0.23 -3.15 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.38 19.73 5.93 -92.71 -0.55 19.18 16 31 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 8.09 8.62 -92.71 -0.80 7.29 16 34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.13 1.11 7.74 -2.39 -0.02 1.10 16 36 H 0.14 0.71 7.82 -2.39 -0.02 0.70 16 37 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 1.75 6.43 -2.39 -0.02 1.74 16 Total: -1.00 -68.75 369.34 4.19 -64.55 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.29 Total: 32.50 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 3.89 Total: -4.16 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.65 Total: -112.93 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 9 Polarization: -11.88 SS G_CDS: 2.26 Total: -9.61 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.75 4.19 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203432884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.286 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds