Wall clock time and date at job start Tue Mar 31 2020 17:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48504 * 109.46887 * 269.99589 * 3 2 1 5 5 H 1.48501 * 109.47083 * 29.99457 * 3 2 1 6 6 H 1.48501 * 109.47328 * 149.99766 * 3 2 1 7 7 C 1.37880 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47193 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00226 * 180.02562 * 11 10 9 13 13 O 1.21357 * 119.99995 * 0.02562 * 12 11 10 14 14 C 1.49447 * 120.00583 * 180.02562 * 12 11 10 15 15 O 1.21357 * 119.99422 * 0.02562 * 14 12 11 16 16 N 1.34769 * 120.00583 * 179.97438 * 14 12 11 17 17 C 1.46502 * 120.00294 * 180.02562 * 16 14 12 18 18 H 1.08996 * 108.64571 * 33.10344 * 17 16 14 19 19 C 1.52158 * 108.58390 * 151.15191 * 17 16 14 20 20 C 1.52905 * 110.75284 * 188.34387 * 19 17 16 21 21 C 1.51600 * 108.69455 * 276.83944 * 20 19 17 22 22 C 1.38075 * 119.94105 * 248.09674 * 21 20 19 23 23 C 1.38363 * 119.65212 * 181.78636 * 22 21 20 24 24 C 1.38294 * 120.10609 * 359.97438 * 23 22 21 25 25 C 1.38181 * 120.19592 * 359.61302 * 24 23 22 26 26 C 1.37928 * 119.59403 * 69.09900 * 21 20 19 27 27 O 1.36221 * 120.20845 * 356.73763 * 26 21 20 28 28 C 1.43103 * 115.62076 * 290.10065 * 27 26 21 29 29 H 0.96992 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 59.99755 * 9 7 2 31 31 H 1.08996 * 109.47438 * 300.00227 * 9 7 2 32 32 H 1.08995 * 109.47054 * 60.00485 * 10 9 7 33 33 H 1.08994 * 109.47376 * 300.00080 * 10 9 7 34 34 H 0.97007 * 119.99604 * 0.02562 * 11 10 9 35 35 H 0.96996 * 119.99865 * 359.97438 * 16 14 12 36 36 H 1.08990 * 109.22544 * 308.67631 * 19 17 16 37 37 H 1.09004 * 109.22109 * 68.02557 * 19 17 16 38 38 H 1.09001 * 109.59885 * 157.06742 * 20 19 17 39 39 H 1.09006 * 109.59785 * 36.60282 * 20 19 17 40 40 H 1.08007 * 120.17138 * 1.50928 * 22 21 20 41 41 H 1.08005 * 119.95098 * 179.97438 * 23 22 21 42 42 H 1.07991 * 119.90188 * 179.58967 * 24 23 22 43 43 H 1.08001 * 120.17119 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.16908 * 207.28644 * 28 27 26 45 45 H 1.09004 * 109.17451 * 326.54241 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0018 13 8 3.4003 -6.0980 0.0023 14 6 1.4396 -7.3923 0.0018 15 8 0.2261 -7.3923 0.0008 16 7 2.1134 -8.5594 0.0019 17 6 1.3810 -9.8282 0.0014 18 1 0.4578 -9.6974 -0.5630 19 6 2.2329 -10.8796 -0.6942 20 6 1.4371 -12.1679 -0.9068 21 6 1.4889 -12.9869 0.3679 22 6 2.1803 -14.1819 0.3915 23 6 2.1928 -14.9428 1.5471 24 6 1.5163 -14.5071 2.6719 25 6 0.8318 -13.3069 2.6498 26 6 0.8256 -12.5407 1.4918 27 8 0.1835 -11.3393 1.4769 28 6 1.0296 -10.1861 1.4301 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.8720 -3.6043 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 0.5428 -4.9308 0.0011 35 1 3.0834 -8.5594 0.0016 36 1 2.5587 -10.4955 -1.6608 37 1 3.1079 -11.0956 -0.0812 38 1 1.8758 -12.7377 -1.7259 39 1 0.4013 -11.9231 -1.1423 40 1 2.7048 -14.5231 -0.4888 41 1 2.7316 -15.8785 1.5708 42 1 1.5228 -15.1067 3.5699 43 1 0.3040 -12.9668 3.5286 44 1 0.5139 -9.3449 1.8934 45 1 1.9464 -10.3920 1.9826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261117465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:17 Heat of formation + Delta-G solvation = -114.282280 kcal Electronic energy + Delta-G solvation = -27264.085351 eV Core-core repulsion = 23245.413355 eV Total energy + Delta-G solvation = -4018.671996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05909 -41.35221 -39.78081 -38.46258 -37.24462 -36.65808 -34.94793 -34.54723 -31.81729 -31.63468 -31.28070 -28.56883 -27.44410 -26.26380 -24.85779 -23.61707 -22.88584 -22.17273 -21.93214 -21.40051 -19.64224 -18.99708 -18.57664 -17.98776 -17.48148 -17.20147 -16.67455 -16.52432 -16.47412 -16.40270 -15.94383 -15.80975 -15.54818 -15.06604 -14.93718 -14.50865 -14.47045 -14.34823 -14.30867 -13.73782 -13.26878 -13.16395 -13.00550 -12.94985 -12.87780 -12.70867 -12.53118 -12.28865 -12.17427 -11.85060 -11.78298 -11.69188 -11.45663 -11.42954 -10.74661 -10.61938 -10.37749 -10.21428 -9.78461 -9.49584 -8.23655 -6.34962 0.21377 0.28105 0.38620 1.20118 1.43400 1.43711 1.55228 2.06279 2.33515 2.42664 2.65182 3.00245 3.11360 3.35417 3.47156 3.64972 3.78660 3.92544 4.02085 4.17129 4.20710 4.36543 4.37807 4.44698 4.47830 4.50934 4.55430 4.58728 4.74037 4.80732 4.91330 4.95730 5.03186 5.05930 5.07014 5.21103 5.41624 5.42418 5.54318 5.55984 5.58370 5.74210 5.80571 5.88195 6.12356 6.31800 6.45421 6.65724 6.78880 6.88636 7.34669 8.88297 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.036415 B = 0.001763 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.724349 B =15880.301577 C =16082.703293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.502 3.498 13 O -0.546 6.546 14 C 0.516 3.484 15 O -0.537 6.537 16 N -0.681 5.681 17 C 0.118 3.882 18 H 0.084 0.916 19 C -0.119 4.119 20 C -0.073 4.073 21 C -0.123 4.123 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.146 4.146 26 C 0.067 3.933 27 O -0.336 6.336 28 C 0.061 3.939 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.007 0.993 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.424 0.576 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.129 0.871 44 H 0.087 0.913 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -33.219 1.223 33.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.282 3.718 13 O -0.425 6.425 14 C 0.297 3.703 15 O -0.413 6.413 16 N -0.336 5.336 17 C 0.014 3.986 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.165 4.165 26 C 0.024 3.976 27 O -0.251 6.251 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.262 0.738 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.147 0.853 44 H 0.105 0.895 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.601 -33.060 1.236 33.554 hybrid contribution -0.069 1.337 0.187 1.352 sum 5.532 -31.723 1.423 32.233 Atomic orbital electron populations 1.70075 1.07706 1.28019 1.50941 1.25925 0.95774 1.03306 0.94430 0.85398 0.78620 0.78239 0.78495 1.19776 1.20813 1.18743 1.21452 0.93780 0.91525 1.51560 0.91632 1.19188 0.94385 0.91985 0.96467 1.21487 0.95063 0.80675 1.01243 1.46086 1.11949 1.05503 1.70410 1.20248 0.87541 0.85580 0.78423 1.90725 1.13833 1.87838 1.50094 1.20054 0.87266 0.85556 0.77438 1.90789 1.14123 1.87664 1.48754 1.45706 1.11859 1.03818 1.72213 1.21319 0.97145 0.82706 0.97423 0.89786 1.21647 0.98351 0.93400 1.02269 1.20696 1.01294 0.94369 0.94656 1.20449 0.98895 0.97580 0.95453 1.21330 0.98235 0.92933 0.99582 1.21596 0.99341 1.00794 0.92711 1.21359 0.96468 0.95274 0.99888 1.21499 1.01018 0.96993 0.96961 1.18872 0.97224 0.87559 0.93978 1.86343 1.33043 1.12282 1.93471 1.22818 0.95423 0.87101 0.96157 0.92592 0.97411 0.97426 0.91941 0.91867 0.74931 0.73801 0.88473 0.89792 0.87415 0.91053 0.83042 0.83157 0.83509 0.85269 0.89468 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.00 0.24 5.46 84.66 0.46 0.71 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 0.87 5.09 29.85 0.15 1.02 16 10 C 0.14 5.72 5.61 86.38 0.48 6.20 16 11 N -0.69 -24.75 5.55 -464.42 -2.58 -27.33 16 12 C 0.50 16.50 7.89 87.27 0.69 17.19 16 13 O -0.55 -19.46 16.48 -3.27 -0.05 -19.52 16 14 C 0.52 14.56 7.78 87.27 0.68 15.24 16 15 O -0.54 -17.65 16.08 -3.27 -0.05 -17.70 16 16 N -0.68 -13.97 4.98 -447.68 -2.23 -16.20 16 17 C 0.12 2.17 2.28 44.20 0.10 2.27 16 18 H 0.08 1.89 7.33 -2.39 -0.02 1.87 16 19 C -0.12 -1.44 5.08 30.28 0.15 -1.28 16 20 C -0.07 -0.87 5.54 30.10 0.17 -0.70 16 21 C -0.12 -1.80 5.07 -19.69 -0.10 -1.90 16 22 C -0.10 -1.09 9.69 22.26 0.22 -0.87 16 23 C -0.13 -1.23 10.05 22.31 0.22 -1.00 16 24 C -0.11 -1.31 10.04 22.27 0.22 -1.08 16 25 C -0.15 -2.38 10.01 22.41 0.22 -2.16 16 26 C 0.07 1.25 5.62 22.35 0.13 1.38 16 27 O -0.34 -7.55 10.00 -96.08 -0.96 -8.51 16 28 C 0.06 1.22 5.99 71.46 0.43 1.65 16 29 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.61 16 34 H 0.41 14.45 7.95 -92.70 -0.74 13.72 16 35 H 0.42 7.29 8.08 -92.71 -0.75 6.54 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.88 7.90 -2.39 -0.02 0.86 16 38 H 0.11 0.76 7.93 -2.39 -0.02 0.74 16 39 H 0.07 1.06 7.88 -2.38 -0.02 1.04 16 40 H 0.15 0.80 7.98 -2.91 -0.02 0.78 16 41 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 45 H 0.07 1.25 7.89 -2.38 -0.02 1.23 16 Total: -1.00 -68.68 379.47 0.44 -68.24 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.46 Total: 23.30 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 4.46 Total: 6.94 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.52 Total: -98.05 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.07 Total: -45.72 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.68 0.44 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261117465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.047 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds