Wall clock time and date at job start Tue Mar 31 2020 16:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46863 * 270.00202 * 3 2 1 5 5 H 1.48496 * 109.47186 * 30.00296 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00416 * 3 2 1 7 7 C 1.37878 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46500 * 129.24970 * 179.19880 * 16 15 14 18 18 C 1.34780 * 120.00390 * 61.28673 * 17 16 15 19 19 O 1.21365 * 119.99432 * 359.97438 * 18 17 16 20 20 C 1.49088 * 120.00245 * 180.02562 * 18 17 16 21 21 O 1.20782 * 119.99898 * 359.97438 * 20 18 17 22 22 C 1.50701 * 119.99802 * 180.02562 * 20 18 17 23 23 C 1.53000 * 117.49528 * 223.74086 * 22 20 18 24 24 C 1.52996 * 117.49691 * 155.08337 * 22 20 18 25 25 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 26 26 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 27 27 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 28 28 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 30 30 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 31 31 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 32 32 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 33 33 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 34 34 H 0.97004 * 119.99994 * 241.28196 * 17 16 15 35 35 H 1.08998 * 115.54694 * 9.40905 * 22 20 18 36 36 H 1.09000 * 117.50024 * 359.97438 * 23 22 20 37 37 H 1.09000 * 117.49876 * 145.01698 * 23 22 20 38 38 H 1.08999 * 117.49727 * 214.97752 * 24 22 20 39 39 H 1.09003 * 117.50014 * 359.97438 * 24 22 20 40 40 H 1.08992 * 114.93459 * 205.06231 * 25 16 15 41 41 H 1.08998 * 114.98218 * 70.02770 * 25 16 15 42 42 H 1.09008 * 114.97367 * 292.86602 * 26 14 12 43 43 H 1.08998 * 114.98354 * 68.03524 * 26 14 12 44 44 H 1.08995 * 113.76947 * 221.05456 * 27 11 10 45 45 H 1.09001 * 113.87193 * 89.67352 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1314 -2.6031 0.0000 11 7 5.0917 -2.0716 0.9865 12 6 6.3433 -2.4037 1.3600 13 8 6.9069 -3.3374 0.8295 14 6 7.0426 -1.6148 2.4369 15 6 7.3995 -0.1079 2.4680 16 6 7.9587 -0.6070 3.8494 17 7 8.6562 0.1470 4.8940 18 6 8.0403 1.1773 5.5068 19 8 6.9079 1.4808 5.1928 20 6 8.7503 1.9449 6.5695 21 8 9.8774 1.6432 6.8816 22 6 8.0613 3.0966 7.2550 23 6 8.8728 4.3746 7.4765 24 6 8.5351 3.4670 8.6619 25 6 8.4589 -1.8099 3.0205 26 6 6.6269 -1.3952 3.9127 27 6 4.1309 -1.0304 1.3998 28 1 -0.4850 0.8400 0.0004 29 1 3.9380 -0.5267 -0.7489 30 1 3.4717 -3.3733 0.3998 31 1 4.5869 -2.8827 -0.9500 32 1 8.1622 0.1994 1.7525 33 1 6.5446 0.5666 2.5181 34 1 9.5614 -0.0954 5.1448 35 1 6.9992 3.2064 7.0364 36 1 9.9052 4.3823 7.1267 37 1 8.3445 5.3252 7.4039 38 1 7.7846 3.8208 9.3688 39 1 9.3449 2.8774 9.0918 40 1 8.5999 -2.7309 3.5861 41 1 9.2741 -1.5874 2.3320 42 1 5.7238 -0.8011 4.0530 43 1 6.6711 -2.2850 4.5407 44 1 4.5860 -0.0544 1.5676 45 1 3.4704 -1.3367 2.2110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273293622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:39 Heat of formation + Delta-G solvation = 66.969764 kcal Electronic energy + Delta-G solvation = -28072.131185 eV Core-core repulsion = 24061.318868 eV Total energy + Delta-G solvation = -4010.812318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30530 -40.91500 -39.25258 -38.73874 -36.99087 -36.78467 -34.10320 -32.63904 -29.77991 -27.69895 -26.35721 -25.93828 -25.81871 -25.23007 -24.25297 -22.98245 -22.60860 -20.19600 -19.96747 -19.13382 -18.47219 -18.04378 -17.22189 -17.03376 -16.70883 -15.98145 -15.88753 -15.28145 -15.09295 -14.95168 -14.57146 -14.30390 -14.18061 -13.98804 -13.87825 -13.34116 -13.27037 -12.83740 -12.26325 -12.10126 -12.05102 -11.95014 -11.90273 -11.70963 -11.51275 -11.33127 -11.14921 -11.09365 -10.84660 -10.77711 -10.64163 -10.44115 -10.12852 -9.98818 -9.82771 -9.43423 -9.41876 -9.16260 -8.67239 -8.08450 -6.21270 -4.24100 0.46560 2.06546 2.46206 2.77086 3.21562 3.22327 3.30881 3.33124 3.34390 3.54987 3.94607 4.13600 4.15859 4.19377 4.25380 4.30785 4.36282 4.37897 4.50938 4.65903 4.77775 5.04298 5.08541 5.29291 5.38916 5.44725 5.44929 5.49360 5.54875 5.60646 5.72989 5.75500 5.78451 5.86109 5.95396 6.08977 6.14901 6.19382 6.34972 6.37957 6.39868 6.54012 6.95470 7.12963 7.53464 7.56363 8.23266 8.36306 8.57016 8.82302 9.39674 10.90762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003140 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.726457 B = 8915.041810 C =10890.529715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.515 4.515 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.119 3.881 11 N -0.632 5.632 12 C 0.591 3.409 13 O -0.553 6.553 14 C -0.142 4.142 15 C -0.100 4.100 16 C 0.085 3.915 17 N -0.653 5.653 18 C 0.482 3.518 19 O -0.487 6.487 20 C 0.388 3.612 21 O -0.424 6.424 22 C -0.212 4.212 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.079 4.079 26 C -0.095 4.095 27 C 0.088 3.912 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.800 6.177 15.149 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.553 4.553 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.378 3.622 13 O -0.433 6.433 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.004 4.004 17 N -0.305 5.305 18 C 0.264 3.736 19 O -0.360 6.360 20 C 0.259 3.741 21 O -0.295 6.295 22 C -0.231 4.231 23 C -0.180 4.180 24 C -0.184 4.184 25 C -0.118 4.118 26 C -0.134 4.134 27 C -0.035 4.035 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.253 0.747 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.913 5.832 14.898 24.773 hybrid contribution 0.665 0.820 0.170 1.069 sum 19.578 6.652 15.069 25.586 Atomic orbital electron populations 1.69890 1.06378 1.27325 1.49261 1.25002 0.94664 0.99147 0.93815 0.86944 0.80694 0.83636 0.78788 1.20165 1.21207 1.18280 1.20814 0.87551 0.94891 1.52065 0.90213 1.20924 0.97092 0.92496 0.92076 1.23332 0.86968 0.99307 0.90601 1.50266 1.11725 1.34551 1.39890 1.17948 0.80735 0.82478 0.81013 1.90663 1.66212 1.30179 1.56244 1.23237 0.97724 0.97697 0.95921 1.24864 1.00829 0.94021 0.94234 1.23384 0.95116 0.93512 0.88355 1.44501 1.18399 1.30976 1.36579 1.20794 0.87463 0.81520 0.83783 1.90818 1.17210 1.65581 1.62375 1.23848 0.86323 0.83359 0.80594 1.90421 1.18523 1.62880 1.57693 1.22532 1.02583 0.96378 1.01652 1.23044 1.00624 0.92990 1.01392 1.23065 1.03528 1.02365 0.89401 1.23971 0.95681 0.95978 0.96155 1.24367 0.97090 0.99107 0.92843 1.24145 0.87672 0.89485 1.02167 0.92358 0.92432 0.89871 0.91446 0.90153 0.89128 0.74726 0.84086 0.87875 0.87091 0.87190 0.87611 0.89688 0.89655 0.88950 0.90272 0.91780 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.95 27.09 -169.99 -4.60 15.34 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.50 5.47 56.52 0.31 -5.19 16 7 C -0.52 -13.23 9.32 -34.44 -0.32 -13.55 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C -0.01 -0.14 2.88 -90.85 -0.26 -0.40 16 10 C 0.12 2.34 8.39 -2.97 -0.02 2.31 16 11 N -0.63 -12.10 3.61 -178.43 -0.64 -12.74 16 12 C 0.59 11.01 8.17 -10.99 -0.09 10.92 16 13 O -0.55 -11.82 17.82 5.56 0.10 -11.72 16 14 C -0.14 -2.09 3.11 -172.27 -0.54 -2.63 16 15 C -0.10 -1.35 7.93 -24.71 -0.20 -1.55 16 16 C 0.08 0.99 3.92 -147.16 -0.58 0.41 16 17 N -0.65 -6.57 5.71 -63.24 -0.36 -6.93 16 18 C 0.48 5.39 7.86 -11.75 -0.09 5.30 16 19 O -0.49 -6.92 16.31 5.48 0.09 -6.83 16 20 C 0.39 3.60 6.97 -29.80 -0.21 3.39 16 21 O -0.42 -4.22 16.54 5.98 0.10 -4.13 16 22 C -0.21 -1.62 5.95 -91.77 -0.55 -2.17 16 23 C -0.14 -0.84 10.14 -26.69 -0.27 -1.11 16 24 C -0.15 -0.85 10.05 -26.70 -0.27 -1.12 16 25 C -0.08 -0.92 7.78 -26.71 -0.21 -1.13 16 26 C -0.10 -1.26 7.76 -25.99 -0.20 -1.46 16 27 C 0.09 1.71 7.37 -2.98 -0.02 1.68 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.06 1.25 7.09 -51.93 -0.37 0.88 16 30 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 33 H 0.09 1.35 7.45 -51.93 -0.39 0.96 16 34 H 0.42 3.22 8.30 -40.82 -0.34 2.88 16 35 H 0.14 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.64 7.89 -51.93 -0.41 0.23 16 40 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 41 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 42 H 0.09 1.34 7.97 -51.92 -0.41 0.92 16 43 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 44 H 0.06 1.21 6.47 -51.93 -0.34 0.87 16 45 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -31.56 383.49 -9.17 -40.73 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.48 Total: 4.52 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.92 Total: 0.88 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.23 Total: -44.58 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.29 Total: -22.67 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.60 Total: 15.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.56 -9.17 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273293622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.702 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds