Wall clock time and date at job start Tue Mar 31 2020 16:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46863 * 270.00202 * 3 2 1 5 5 H 1.48496 * 109.47186 * 30.00296 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00416 * 3 2 1 7 7 C 1.37878 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.53947 * 113.73968 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 222.04272 * 10 9 7 12 12 C 1.34769 * 134.49063 * 204.63541 * 11 10 9 13 13 O 1.21281 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.54891 * 129.08893 * 299.93972 * 14 12 11 16 16 C 1.57167 * 77.91549 * 180.16406 * 15 14 12 17 17 N 1.46500 * 129.24970 * 179.19880 * 16 15 14 18 18 C 1.34780 * 120.00390 * 61.28673 * 17 16 15 19 19 O 1.21365 * 119.99432 * 359.97438 * 18 17 16 20 20 C 1.49088 * 120.00245 * 180.02562 * 18 17 16 21 21 O 1.20782 * 119.99898 * 359.97438 * 20 18 17 22 22 C 1.50701 * 119.99802 * 180.02562 * 20 18 17 23 23 C 1.53000 * 117.49528 * 223.74086 * 22 20 18 24 24 C 1.52996 * 117.49691 * 155.08337 * 22 20 18 25 25 C 1.54412 * 83.73370 * 42.47561 * 16 15 14 26 26 C 1.54885 * 129.09037 * 60.06677 * 14 12 11 27 27 C 1.47577 * 91.01296 * 24.63911 * 11 10 9 28 28 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.01667 * 311.65275 * 9 7 2 30 30 H 1.09001 * 113.76955 * 336.34307 * 10 9 7 31 31 H 1.08997 * 113.77064 * 107.74383 * 10 9 7 32 32 H 1.09001 * 114.98080 * 291.95801 * 15 14 12 33 33 H 1.09003 * 114.97457 * 67.13363 * 15 14 12 34 34 H 0.97004 * 119.99994 * 241.28196 * 17 16 15 35 35 H 1.08998 * 115.54694 * 9.40905 * 22 20 18 36 36 H 1.09000 * 117.50024 * 359.97438 * 23 22 20 37 37 H 1.09000 * 117.49876 * 145.01698 * 23 22 20 38 38 H 1.08999 * 117.49727 * 214.97752 * 24 22 20 39 39 H 1.09003 * 117.50014 * 359.97438 * 24 22 20 40 40 H 1.08992 * 114.93459 * 205.06231 * 25 16 15 41 41 H 1.08998 * 114.98218 * 70.02770 * 25 16 15 42 42 H 1.09008 * 114.97367 * 292.86602 * 26 14 12 43 43 H 1.08998 * 114.98354 * 68.03524 * 26 14 12 44 44 H 1.08995 * 113.76947 * 221.05456 * 27 11 10 45 45 H 1.09001 * 113.87193 * 89.67352 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1314 -2.6031 0.0000 11 7 5.0917 -2.0716 0.9865 12 6 6.3433 -2.4037 1.3600 13 8 6.9069 -3.3374 0.8295 14 6 7.0426 -1.6148 2.4369 15 6 7.3995 -0.1079 2.4680 16 6 7.9587 -0.6070 3.8494 17 7 8.6562 0.1470 4.8940 18 6 8.0403 1.1773 5.5068 19 8 6.9079 1.4808 5.1928 20 6 8.7503 1.9449 6.5695 21 8 9.8774 1.6432 6.8816 22 6 8.0613 3.0966 7.2550 23 6 8.8728 4.3746 7.4765 24 6 8.5351 3.4670 8.6619 25 6 8.4589 -1.8099 3.0205 26 6 6.6269 -1.3952 3.9127 27 6 4.1309 -1.0304 1.3998 28 1 -0.4850 0.8400 0.0004 29 1 3.9380 -0.5267 -0.7489 30 1 3.4717 -3.3733 0.3998 31 1 4.5869 -2.8827 -0.9500 32 1 8.1622 0.1994 1.7525 33 1 6.5446 0.5666 2.5181 34 1 9.5614 -0.0954 5.1448 35 1 6.9992 3.2064 7.0364 36 1 9.9052 4.3823 7.1267 37 1 8.3445 5.3252 7.4039 38 1 7.7846 3.8208 9.3688 39 1 9.3449 2.8774 9.0918 40 1 8.5999 -2.7309 3.5861 41 1 9.2741 -1.5874 2.3320 42 1 5.7238 -0.8011 4.0530 43 1 6.6711 -2.2850 4.5407 44 1 4.5860 -0.0544 1.5676 45 1 3.4704 -1.3367 2.2110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273293622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:38 Heat of formation + Delta-G solvation = 46.450532 kcal Electronic energy + Delta-G solvation = -28073.020966 eV Core-core repulsion = 24061.318868 eV Total energy + Delta-G solvation = -4011.702098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.34187 -41.69247 -40.75510 -39.65415 -38.57962 -37.33264 -34.99935 -34.65622 -31.47997 -28.52806 -27.82592 -27.04315 -26.96979 -26.75252 -25.45298 -23.63887 -23.38928 -21.62958 -20.75134 -20.38793 -19.41263 -19.22546 -19.11211 -18.17754 -17.61953 -17.26640 -16.81168 -16.68852 -16.03241 -15.92784 -15.72038 -15.55466 -15.31758 -15.16886 -15.03197 -14.77906 -14.66978 -13.85137 -13.77305 -13.55353 -13.40522 -13.00903 -12.79812 -12.76535 -12.58836 -12.49117 -12.47602 -12.31139 -11.87888 -11.67984 -11.66121 -11.63693 -11.59144 -11.49714 -11.28864 -10.92987 -10.68861 -10.60125 -10.36300 -9.68048 -8.28250 -6.35357 -0.28695 1.22256 1.34932 1.40413 1.43299 1.52135 1.67074 1.84703 2.37531 2.71354 2.83143 3.00737 3.04201 3.13538 3.16431 3.26962 3.38084 3.45630 3.57358 3.75151 3.92161 4.04045 4.14736 4.29069 4.39704 4.40876 4.49410 4.51090 4.56010 4.68971 4.69212 4.70631 4.72495 4.76042 4.82937 4.86125 4.88398 4.95283 4.96368 5.15270 5.21897 5.35795 5.59854 5.64159 6.18599 6.27182 6.68372 6.74825 6.76866 7.06022 7.32038 8.87295 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003140 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.726457 B = 8915.041810 C =10890.529715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.514 4.514 8 H 0.043 0.957 9 C -0.012 4.012 10 C 0.120 3.880 11 N -0.633 5.633 12 C 0.590 3.410 13 O -0.582 6.582 14 C -0.166 4.166 15 C -0.101 4.101 16 C 0.102 3.898 17 N -0.642 5.642 18 C 0.480 3.520 19 O -0.520 6.520 20 C 0.396 3.604 21 O -0.432 6.432 22 C -0.230 4.230 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.062 4.062 26 C -0.096 4.096 27 C 0.102 3.898 28 H 0.267 0.733 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.429 0.571 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.818 7.583 16.631 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.552 4.552 8 H 0.061 0.939 9 C -0.032 4.032 10 C -0.002 4.002 11 N -0.365 5.365 12 C 0.380 3.620 13 O -0.464 6.464 14 C -0.170 4.170 15 C -0.140 4.140 16 C 0.013 3.987 17 N -0.294 5.294 18 C 0.264 3.736 19 O -0.395 6.395 20 C 0.268 3.732 21 O -0.303 6.303 22 C -0.250 4.250 23 C -0.172 4.172 24 C -0.174 4.174 25 C -0.101 4.101 26 C -0.135 4.135 27 C -0.020 4.020 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.269 0.731 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.983 7.221 16.398 28.360 hybrid contribution -0.310 0.280 -0.303 0.516 sum 21.674 7.502 16.095 28.019 Atomic orbital electron populations 1.70033 1.08328 1.28293 1.51544 1.25820 0.95285 1.02919 0.93608 0.85960 0.80330 0.78842 0.79137 1.19683 1.21539 1.15552 1.20986 0.89787 0.93458 1.50940 0.93863 1.20876 0.94438 0.94166 0.93701 1.23233 0.87263 0.98217 0.91471 1.50214 1.12082 1.34403 1.39818 1.18471 0.80080 0.82248 0.81183 1.90642 1.66639 1.31590 1.57493 1.23131 0.99841 0.98514 0.95528 1.24889 1.00769 0.92571 0.95793 1.23042 0.94513 0.93165 0.87938 1.44456 1.18839 1.30384 1.35757 1.21231 0.87128 0.81414 0.83828 1.90808 1.18682 1.66565 1.63488 1.23783 0.86082 0.83412 0.79941 1.90424 1.18738 1.63237 1.57929 1.22543 1.02445 0.96789 1.03216 1.23186 1.00417 0.92852 1.00781 1.23190 1.03600 1.01691 0.88871 1.23927 0.93933 0.96366 0.95832 1.24384 0.97443 0.99715 0.91926 1.23873 0.87516 0.90240 1.00407 0.92349 0.91770 0.90094 0.90509 0.88808 0.90754 0.73115 0.84586 0.87897 0.85482 0.85454 0.87788 0.88257 0.88125 0.90541 0.89047 0.90525 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 13.96 21.45 0.30 -55.60 16 2 C 0.02 1.21 5.47 84.65 0.46 1.67 16 3 Si 0.93 40.83 27.09 68.60 1.86 42.69 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.23 -9.07 5.47 99.48 0.54 -8.53 16 7 C -0.51 -26.94 9.32 25.60 0.24 -26.70 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 C -0.01 -0.52 2.88 -10.88 -0.03 -0.56 16 10 C 0.12 4.68 8.39 86.48 0.73 5.41 16 11 N -0.63 -23.67 3.61 -836.84 -3.02 -26.69 16 12 C 0.59 21.27 8.17 87.66 0.72 21.99 16 13 O -0.58 -24.23 17.82 -3.03 -0.05 -24.28 16 14 C -0.17 -4.59 3.11 -63.68 -0.20 -4.79 16 15 C -0.10 -2.51 7.93 31.90 0.25 -2.25 16 16 C 0.10 2.14 3.92 -6.34 -0.02 2.11 16 17 N -0.64 -11.33 5.71 -472.34 -2.69 -14.02 16 18 C 0.48 9.95 7.86 87.16 0.69 10.63 16 19 O -0.52 -14.24 16.31 -3.29 -0.05 -14.29 16 20 C 0.40 6.67 6.97 28.60 0.20 6.86 16 21 O -0.43 -7.70 16.54 -1.52 -0.03 -7.72 16 22 C -0.23 -3.12 5.95 -11.54 -0.07 -3.19 16 23 C -0.14 -1.26 10.14 30.62 0.31 -0.95 16 24 C -0.14 -1.25 10.05 30.62 0.31 -0.95 16 25 C -0.06 -1.25 7.78 30.61 0.24 -1.02 16 26 C -0.10 -2.37 7.76 31.07 0.24 -2.13 16 27 C 0.10 3.87 7.37 86.48 0.64 4.51 16 28 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.06 2.68 7.09 -2.39 -0.02 2.66 16 30 H 0.08 3.17 8.09 -2.39 -0.02 3.16 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.09 2.05 7.91 -2.39 -0.02 2.03 16 33 H 0.07 2.09 7.45 -2.39 -0.02 2.08 16 34 H 0.43 5.38 8.30 -92.71 -0.77 4.61 16 35 H 0.14 1.99 7.72 -2.39 -0.02 1.97 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 1.02 7.89 -2.39 -0.02 1.00 16 40 H 0.10 1.76 7.94 -2.39 -0.02 1.74 16 41 H 0.10 1.76 7.91 -2.39 -0.02 1.74 16 42 H 0.08 2.15 7.97 -2.38 -0.02 2.13 16 43 H 0.09 2.01 7.93 -2.39 -0.02 1.99 16 44 H 0.08 2.73 6.47 -2.39 -0.02 2.72 16 45 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 Total: -1.00 -68.98 383.49 1.10 -67.88 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.10 Total: 21.38 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.69 Total: 10.66 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -5.41 Total: -96.31 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.13 Total: -46.30 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.86 Total: 42.69 kcal Total: -68.98 1.10 -67.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273293622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.331 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds