Wall clock time and date at job start Tue Mar 31 2020 17:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47096 * 239.99592 * 3 2 1 5 5 H 1.48500 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47261 * 120.00052 * 3 2 1 7 7 C 1.38814 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99612 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46761 * 173.62867 * 10 9 7 12 12 H 1.08998 * 109.99822 * 45.37869 * 11 10 9 13 13 C 1.54322 * 109.77330 * 166.53366 * 11 10 9 14 14 C 1.55151 * 102.86172 * 141.88451 * 13 11 10 15 15 C 1.54906 * 101.58477 * 324.30206 * 14 13 11 16 16 N 1.47016 * 109.88580 * 284.28004 * 11 10 9 17 17 C 1.34783 * 125.64320 * 61.67978 * 16 11 10 18 18 O 1.21582 * 120.00400 * 7.58732 * 17 16 11 19 19 C 1.47613 * 119.99922 * 187.59342 * 17 16 11 20 20 C 1.39708 * 120.09728 * 14.38027 * 19 17 16 21 21 C 1.37720 * 119.96442 * 180.09111 * 20 19 17 22 22 C 1.39009 * 120.26949 * 359.97438 * 21 20 19 23 23 C 1.39257 * 120.04993 * 359.87481 * 22 21 20 24 24 C 1.38295 * 119.95877 * 0.19271 * 23 22 21 25 25 O 1.36143 * 120.76776 * 180.22666 * 23 22 21 26 26 C 1.43166 * 116.70630 * 342.92755 * 25 23 22 27 27 C 1.53458 * 108.23556 * 46.13233 * 26 25 23 28 28 O 1.35967 * 119.23293 * 179.85648 * 22 21 20 29 29 H 0.96997 * 119.99490 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00120 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47573 * 53.62871 * 10 9 7 32 32 H 1.08998 * 109.47206 * 293.62392 * 10 9 7 33 33 H 1.09003 * 110.92387 * 23.46948 * 13 11 10 34 34 H 1.09005 * 110.74243 * 260.21568 * 13 11 10 35 35 H 1.08998 * 111.00572 * 206.22886 * 14 13 11 36 36 H 1.09006 * 111.00564 * 82.37943 * 14 13 11 37 37 H 1.08994 * 110.37062 * 278.17103 * 15 14 13 38 38 H 1.09004 * 110.36509 * 155.84366 * 15 14 13 39 39 H 1.07998 * 120.01878 * 0.07226 * 20 19 17 40 40 H 1.07995 * 119.86229 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.02318 * 179.85232 * 24 23 22 42 42 H 1.08998 * 109.71287 * 165.82223 * 26 25 23 43 43 H 1.09010 * 109.70946 * 286.40505 * 26 25 23 44 44 H 1.09000 * 109.71261 * 59.85692 * 27 26 25 45 45 H 1.09000 * 109.71436 * 180.48467 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0714 -4.8153 0.1606 12 1 0.2154 -4.6696 -0.4983 13 6 1.7731 -6.1486 -0.1731 14 6 1.1723 -7.1259 0.8714 15 6 1.0200 -6.2050 2.1076 16 7 0.6191 -4.8976 1.5571 17 6 -0.0554 -3.9387 2.2220 18 8 -0.4595 -2.9572 1.6291 19 6 -0.3035 -4.0801 3.6702 20 6 0.4000 -5.0323 4.4119 21 6 0.1650 -5.1632 5.7626 22 6 -0.7701 -4.3506 6.3930 23 6 -1.4725 -3.3974 5.6601 24 6 -1.2421 -3.2620 4.3032 25 8 -2.3884 -2.5908 6.2636 26 6 -2.8620 -3.0048 7.5496 27 6 -1.6516 -3.4221 8.3956 28 8 -0.9875 -4.4999 7.7269 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7674 -3.6668 0.8280 32 1 2.5963 -3.7656 -0.9410 33 1 2.8523 -6.0631 -0.0453 34 1 1.5304 -6.4696 -1.1861 35 1 1.8586 -7.9471 1.0781 36 1 0.2034 -7.5020 0.5426 37 1 1.9695 -6.1192 2.6360 38 1 0.2475 -6.5891 2.7739 39 1 1.1276 -5.6657 3.9262 40 1 0.7101 -5.8996 6.3343 41 1 -1.7880 -2.5247 3.7334 42 1 -3.3814 -2.1778 8.0338 43 1 -3.5413 -3.8498 7.4367 44 1 -0.9689 -2.5791 8.5017 45 1 -1.9864 -3.7507 9.3795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277997369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:56 Heat of formation + Delta-G solvation = -29.597431 kcal Electronic energy + Delta-G solvation = -29263.504016 eV Core-core repulsion = 25248.504231 eV Total energy + Delta-G solvation = -4014.999785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36755 -40.00531 -37.70096 -37.37977 -36.63578 -34.20398 -32.09443 -31.16557 -30.85287 -30.69867 -28.97020 -28.23934 -25.48274 -24.76483 -23.60343 -22.89256 -21.83287 -21.07743 -20.81873 -19.19714 -18.33460 -17.89807 -17.33049 -16.75858 -16.33716 -15.90450 -15.30283 -15.23250 -14.91290 -14.54138 -14.47426 -14.02959 -13.95297 -13.80649 -13.64382 -13.41987 -13.14115 -12.88687 -12.85214 -12.54999 -12.28292 -11.82471 -11.71017 -11.45015 -11.26128 -11.18145 -11.08207 -10.85452 -10.65408 -10.55919 -10.54168 -10.41875 -9.90641 -9.49338 -9.03854 -8.67188 -8.62627 -8.13300 -8.06622 -6.56516 -5.43275 -2.71544 0.94678 1.30775 2.80357 3.00435 3.23311 3.43685 3.58521 3.61932 3.63599 4.00911 4.02816 4.49920 4.55470 4.59345 4.62882 4.66714 4.81489 4.91016 4.99066 5.00811 5.16148 5.20471 5.30113 5.37751 5.41564 5.46693 5.59781 5.77651 5.78151 5.83342 5.90491 6.00078 6.03598 6.12376 6.14410 6.27868 6.38000 6.43747 6.58080 6.66206 6.75576 6.88029 7.06615 7.30543 7.91340 8.00784 8.68366 8.88384 9.86480 10.51714 10.91582 11.77277 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.004313 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.303896 B = 6489.853928 C = 8773.523554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.897 3.103 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.240 4.240 8 H 0.061 0.939 9 N -0.724 5.724 10 C 0.145 3.855 11 C 0.132 3.868 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.559 3.441 18 O -0.459 6.459 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.124 4.124 22 C 0.064 3.936 23 C 0.041 3.959 24 C -0.052 4.052 25 O -0.303 6.303 26 C 0.020 3.980 27 C 0.020 3.980 28 O -0.308 6.308 29 H 0.250 0.750 30 H 0.400 0.600 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -17.759 15.053 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.206 4.206 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.374 5.374 10 C 0.016 3.984 11 C 0.029 3.971 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.030 4.030 16 N -0.351 5.351 17 C 0.346 3.654 18 O -0.329 6.329 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.143 4.143 22 C 0.018 3.982 23 C -0.004 4.004 24 C -0.071 4.071 25 O -0.218 6.218 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.222 6.222 29 H 0.060 0.940 30 H 0.241 0.759 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.978 -16.957 14.818 22.715 hybrid contribution 0.247 1.107 0.436 1.215 sum -2.731 -15.850 15.254 22.167 Atomic orbital electron populations 1.69739 1.04738 1.24753 1.57074 1.24685 0.95351 0.97074 1.03475 0.86430 0.78562 0.84571 0.77559 1.21572 1.21856 1.21669 1.19096 0.90486 0.84705 1.42912 0.92127 1.42810 1.07148 0.98906 1.88582 1.21021 0.93274 0.86570 0.97541 1.21873 0.97580 0.95424 0.82263 0.90654 1.22635 1.00578 0.93625 0.99435 1.22815 1.01728 0.97400 0.95305 1.22629 0.99724 0.84015 0.96644 1.48250 1.57627 1.15990 1.13260 1.17699 0.79250 0.82588 0.85868 1.90948 1.46837 1.27645 1.67472 1.19728 0.99171 0.98152 0.94243 1.21943 0.99566 0.97834 0.93113 1.20316 0.97933 1.01491 0.94560 1.19127 0.97427 0.98601 0.83013 1.18707 0.93806 0.95411 0.92481 1.20561 0.97485 0.98620 0.90428 1.86389 1.56092 1.46605 1.32667 1.23612 0.95944 1.02805 0.83189 1.23646 0.94620 0.90755 0.96576 1.86249 1.75410 1.42240 1.18306 0.94013 0.75862 0.96401 0.96441 0.90352 0.90167 0.90100 0.90671 0.91302 0.90255 0.82801 0.84535 0.83170 0.86078 0.90546 0.90317 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.17 13.06 55.49 0.72 -29.45 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 24.10 29.55 -169.99 -5.02 19.07 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 7 C -0.24 -7.37 9.99 -15.06 -0.15 -7.52 16 8 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -20.32 4.49 -59.91 -0.27 -20.59 16 10 C 0.15 3.17 5.61 -4.04 -0.02 3.14 16 11 C 0.13 2.27 3.02 -66.96 -0.20 2.07 16 12 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 13 C -0.12 -1.46 6.43 -24.90 -0.16 -1.62 16 14 C -0.13 -1.25 7.08 -24.59 -0.17 -1.42 16 15 C 0.09 1.04 4.90 -2.53 -0.01 1.03 16 16 N -0.61 -10.23 3.07 -164.21 -0.50 -10.73 16 17 C 0.56 11.26 7.43 -12.43 -0.09 11.17 16 18 O -0.46 -11.78 13.08 5.29 0.07 -11.71 16 19 C -0.11 -1.87 5.80 -104.99 -0.61 -2.48 16 20 C -0.11 -1.41 8.18 -39.22 -0.32 -1.73 16 21 C -0.12 -1.53 9.94 -39.49 -0.39 -1.92 16 22 C 0.06 0.87 6.50 -38.92 -0.25 0.61 16 23 C 0.04 0.63 6.48 -39.18 -0.25 0.37 16 24 C -0.05 -0.90 9.50 -39.02 -0.37 -1.28 16 25 O -0.30 -4.30 10.41 -32.94 -0.34 -4.65 16 26 C 0.02 0.18 7.26 37.39 0.27 0.45 16 27 C 0.02 0.16 7.26 37.39 0.27 0.43 16 28 O -0.31 -3.62 10.41 -32.38 -0.34 -3.95 16 29 H 0.25 7.98 8.31 -40.82 -0.34 7.64 16 30 H 0.40 12.04 4.97 -40.82 -0.20 11.84 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.08 0.87 7.86 -51.93 -0.41 0.47 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.69 6.98 -51.93 -0.36 0.32 16 38 H 0.08 0.78 6.48 -51.93 -0.34 0.44 16 39 H 0.15 1.67 3.75 -52.49 -0.20 1.47 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.15 2.90 7.71 -52.49 -0.40 2.50 16 42 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -39.02 359.57 -8.94 -47.95 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.10 Total: 7.70 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.57 Total: 0.94 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.05 Total: -60.77 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.61 Total: -20.31 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.02 Total: 19.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.02 -8.94 -47.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277997369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.355 kcal (2) G-P(sol) polarization free energy of solvation -39.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds