Wall clock time and date at job start Tue Mar 31 2020 16:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00612 * 2 1 4 4 C 1.52995 * 109.47238 * 275.02065 * 3 2 1 5 5 H 1.09008 * 112.73721 * 315.99558 * 4 3 2 6 6 C 1.53493 * 113.47307 * 86.73635 * 4 3 2 7 7 C 1.53612 * 83.30816 * 140.83226 * 6 4 3 8 8 N 1.47068 * 113.46865 * 185.25362 * 4 3 2 9 9 C 1.34772 * 136.05661 * 38.13169 * 8 4 3 10 10 O 1.21275 * 120.00701 * 355.00676 * 9 8 4 11 11 C 1.50706 * 119.99750 * 175.00731 * 9 8 4 12 12 S 1.81001 * 109.46961 * 179.97438 * 11 9 8 13 13 C 1.76205 * 99.99926 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00089 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99758 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99803 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47217 * 90.00674 * 17 15 13 19 19 H 1.48501 * 109.47002 * 209.99910 * 17 15 13 20 20 H 1.48498 * 109.47329 * 330.00144 * 17 15 13 21 21 C 1.34784 * 119.99504 * 180.27222 * 2 1 3 22 22 O 1.21278 * 119.99666 * 174.70898 * 21 2 1 23 23 C 1.50697 * 120.00095 * 354.71181 * 21 2 1 24 24 C 1.53001 * 109.46976 * 179.97438 * 23 21 2 25 25 C 1.53003 * 109.46896 * 180.02562 * 24 23 21 26 26 F 1.39903 * 109.47018 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47434 * 269.72953 * 1 2 3 28 28 H 1.09000 * 109.46732 * 29.72297 * 1 2 3 29 29 H 1.08995 * 109.47398 * 149.72316 * 1 2 3 30 30 H 1.09011 * 109.46820 * 35.01512 * 3 2 1 31 31 H 1.08997 * 109.47461 * 155.01245 * 3 2 1 32 32 H 1.08998 * 114.21222 * 254.44150 * 6 4 3 33 33 H 1.09003 * 114.20238 * 27.26694 * 6 4 3 34 34 H 1.09001 * 113.50703 * 219.18743 * 7 6 4 35 35 H 1.08996 * 113.46698 * 88.76755 * 7 6 4 36 36 H 1.08991 * 109.47428 * 300.00364 * 11 9 8 37 37 H 1.09010 * 109.46826 * 60.00037 * 11 9 8 38 38 H 0.97005 * 119.99782 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47074 * 299.99982 * 23 21 2 40 40 H 1.09003 * 109.46902 * 60.00022 * 23 21 2 41 41 H 1.08996 * 109.47306 * 299.99964 * 24 23 21 42 42 H 1.08996 * 109.46840 * 60.00405 * 24 23 21 43 43 H 1.09005 * 109.46894 * 299.99753 * 25 24 23 44 44 H 1.09000 * 109.47702 * 59.99612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3433 1.7734 -1.4369 5 1 2.6267 0.9846 -2.1339 6 6 1.1492 2.6111 -1.9147 7 6 2.2415 3.4573 -2.5860 8 7 3.1730 2.9823 -1.5517 9 6 4.2940 3.4490 -0.9670 10 8 4.8004 2.8364 -0.0510 11 6 4.9184 4.7322 -1.4516 12 16 6.3988 5.0898 -0.4735 13 6 6.9093 6.5965 -1.2310 14 1 6.3366 7.0119 -2.0469 15 6 8.0470 7.2502 -0.7783 16 7 8.7448 6.7442 0.2166 17 14 8.5878 8.8479 -1.5809 18 1 7.9532 9.9933 -0.8805 19 1 10.0651 8.9709 -1.4926 20 1 8.1752 8.8497 -3.0074 21 6 2.1388 -1.1673 -0.0055 22 8 3.3477 -1.1691 -0.1024 23 6 1.3900 -2.4701 0.1085 24 6 2.3831 -3.6336 0.0766 25 6 1.6228 -4.9563 0.1918 26 9 2.5310 -6.0202 0.1632 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3633 0.8925 -0.5095 29 1 -0.3634 -0.8874 -0.5181 30 1 1.6503 2.0042 0.5897 31 1 3.1859 1.1175 0.4341 32 1 0.4913 2.0939 -2.6131 33 1 0.6147 3.1241 -1.1151 34 1 2.0510 4.5295 -2.5392 35 1 2.4977 3.1182 -3.5897 36 1 5.1922 4.6292 -2.5015 37 1 4.2042 5.5482 -1.3408 38 1 9.5401 7.2008 0.5327 39 1 0.8365 -2.4900 1.0473 40 1 0.6944 -2.5636 -0.7255 41 1 2.9363 -3.6135 -0.8624 42 1 3.0790 -3.5402 0.9103 43 1 1.0694 -4.9767 1.1307 44 1 0.9271 -5.0495 -0.6421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282050224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:33 Heat of formation + Delta-G solvation = -116.510391 kcal Electronic energy + Delta-G solvation = -25734.543366 eV Core-core repulsion = 21727.758398 eV Total energy + Delta-G solvation = -4006.784968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.54805 -41.74520 -40.71086 -38.91334 -36.59741 -35.06203 -34.62525 -32.30906 -30.47142 -29.48943 -28.18001 -27.68314 -27.08366 -24.43805 -23.23824 -22.73238 -20.36377 -20.15552 -19.50448 -18.18101 -18.04738 -17.57107 -17.44167 -17.04133 -16.91877 -16.74749 -16.38506 -16.21081 -15.75475 -15.70661 -15.48079 -14.73796 -14.52732 -14.44252 -14.31221 -13.87059 -13.79626 -13.73047 -13.47079 -13.21338 -13.14288 -12.93439 -12.90425 -12.65260 -12.61310 -12.42893 -12.36195 -12.01102 -11.77444 -11.70385 -11.54243 -11.17525 -10.95033 -10.78145 -10.33132 -9.91960 -9.60223 -8.73357 -8.37865 -6.17914 1.15793 1.38920 1.40672 1.51559 1.54063 1.60627 1.79010 2.19257 2.24405 2.95961 3.17324 3.30795 3.46394 3.65903 3.72797 3.85708 3.88766 3.93660 4.04608 4.14914 4.20327 4.28678 4.34916 4.39094 4.43920 4.45569 4.57001 4.60606 4.64144 4.70927 4.79295 4.83008 4.92589 4.98239 5.03094 5.06692 5.24861 5.27334 5.37416 5.50300 6.16115 6.38356 6.61992 7.02414 7.08698 7.18075 8.71652 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.002142 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.804419 B =13068.682584 C =14100.571473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.111 3.889 4 C 0.116 3.884 5 H 0.081 0.919 6 C -0.117 4.117 7 C 0.092 3.908 8 N -0.652 5.652 9 C 0.554 3.446 10 O -0.566 6.566 11 C -0.115 4.115 12 S -0.156 6.156 13 C -0.546 4.546 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.912 5.912 17 Si 1.003 2.997 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.257 1.257 21 C 0.494 3.506 22 O -0.597 6.597 23 C -0.120 4.120 24 C -0.143 4.143 25 C 0.062 3.938 26 F -0.243 7.243 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.272 0.728 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.101 0.899 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.634 -16.100 -6.375 35.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.343 5.343 3 C -0.013 4.013 4 C 0.011 3.989 5 H 0.099 0.901 6 C -0.154 4.154 7 C -0.029 4.029 8 N -0.390 5.390 9 C 0.344 3.656 10 O -0.444 6.444 11 C -0.266 4.266 12 S 0.071 5.929 13 C -0.693 4.693 14 H 0.102 0.898 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.824 3.176 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.181 1.181 21 C 0.284 3.716 22 O -0.478 6.478 23 C -0.159 4.159 24 C -0.181 4.181 25 C 0.007 3.993 26 F -0.225 7.225 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -28.936 -16.925 -4.861 33.873 hybrid contribution 1.070 1.556 -1.021 2.147 sum -27.866 -15.369 -5.882 32.362 Atomic orbital electron populations 1.22275 0.75572 1.05913 1.03759 1.47938 1.09063 1.04247 1.73008 1.21484 0.97374 0.86011 0.96432 1.23235 0.89528 0.89106 0.96992 0.90131 1.23571 0.94121 0.96112 1.01583 1.23353 0.85253 1.01986 0.92298 1.49891 1.24702 1.23281 1.41099 1.19741 0.78299 0.85853 0.81756 1.90706 1.62201 1.60675 1.30854 1.23253 1.01325 0.97947 1.04118 1.85678 1.27875 1.31485 1.47852 1.23181 1.14980 1.08881 1.22281 0.89837 1.26213 0.95196 1.02522 0.95465 1.70203 1.17141 1.40843 1.26677 0.84888 0.77386 0.76422 0.78857 1.19000 1.20269 1.18099 1.21701 0.87609 0.87274 0.75009 1.90789 1.17626 1.88084 1.51272 1.21603 0.98546 0.87952 1.07796 1.21903 0.98853 0.94458 1.02933 1.22238 0.89742 0.81113 1.06167 1.92732 1.71504 1.59893 1.98344 0.91132 0.88884 0.87726 0.88838 0.93882 0.85062 0.87106 0.88762 0.88119 0.88077 0.87334 0.91938 0.85297 0.84335 0.92425 0.93046 0.88067 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 10.23 127.77 1.31 1.56 16 2 N -0.61 -10.33 2.87 -846.78 -2.43 -12.76 16 3 C 0.11 2.81 5.17 86.38 0.45 3.25 16 4 C 0.12 2.56 4.28 41.79 0.18 2.74 16 5 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 6 C -0.12 -1.15 7.09 30.97 0.22 -0.93 16 7 C 0.09 1.47 8.42 83.22 0.70 2.17 16 8 N -0.65 -19.00 3.57 -833.03 -2.97 -21.97 16 9 C 0.55 23.29 8.02 87.66 0.70 24.00 16 10 O -0.57 -29.78 15.21 -3.01 -0.05 -29.83 16 11 C -0.12 -5.01 5.99 71.24 0.43 -4.58 16 12 S -0.16 -9.20 20.57 -56.49 -1.16 -10.36 16 13 C -0.55 -32.25 9.50 67.95 0.65 -31.60 16 14 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 15 C 0.01 0.62 5.49 84.86 0.47 1.09 16 16 N -0.91 -57.80 13.22 21.65 0.29 -57.51 16 17 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 21 C 0.49 10.84 7.66 87.66 0.67 11.51 16 22 O -0.60 -21.77 15.54 -3.02 -0.05 -21.82 16 23 C -0.12 -1.13 4.38 29.85 0.13 -1.00 16 24 C -0.14 -2.21 4.96 30.60 0.15 -2.06 16 25 C 0.06 0.59 7.55 71.98 0.54 1.13 16 26 F -0.24 -4.64 17.36 44.97 0.78 -3.86 16 27 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.09 0.07 7.11 -2.39 -0.02 0.06 16 29 H 0.10 -0.23 6.48 -2.39 -0.02 -0.25 16 30 H 0.09 2.03 7.84 -2.38 -0.02 2.01 16 31 H 0.04 1.68 6.21 -2.39 -0.01 1.66 16 32 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.86 7.94 -2.39 -0.02 0.84 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 37 H 0.11 4.19 8.14 -2.39 -0.02 4.18 16 38 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 39 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.14 0.17 7.24 -2.39 -0.02 0.16 16 41 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -99.28 384.51 4.02 -95.26 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.99 Total: 9.00 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 6.59 Total: 7.27 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -5.12 Total: -92.25 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.09 Total: -51.65 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.86 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.16 Total: -10.36 kcal Total: -99.28 4.02 -95.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282050224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.253 kcal (2) G-P(sol) polarization free energy of solvation -99.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds