Wall clock time and date at job start Tue Mar 31 2020 16:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00303 * 2 1 4 4 C 1.53000 * 109.46949 * 270.00507 * 3 2 1 5 5 C 1.52995 * 109.47126 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47351 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00007 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99977 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99687 * 180.02562 * 7 6 5 10 10 S 1.81002 * 109.46719 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99609 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00607 * 359.97438 * 11 10 9 13 13 C 1.38808 * 119.99995 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99902 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99784 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47230 * 90.00201 * 15 13 11 17 17 H 1.48503 * 109.47296 * 210.00113 * 15 13 11 18 18 H 1.48502 * 109.47275 * 330.00210 * 15 13 11 19 19 C 1.34778 * 120.00135 * 179.97438 * 2 1 3 20 20 O 1.21282 * 120.00006 * 176.38159 * 19 2 1 21 21 C 1.50701 * 120.00165 * 356.66386 * 19 2 1 22 22 C 1.53002 * 115.55100 * 70.86616 * 21 19 2 23 23 F 1.39897 * 109.47333 * 185.81379 * 22 21 19 24 24 C 1.53001 * 117.49488 * 285.20065 * 21 19 2 25 25 C 1.52998 * 117.50014 * 216.54133 * 21 19 2 26 26 H 1.09002 * 109.46713 * 275.95808 * 1 2 3 27 27 H 1.08990 * 109.47332 * 35.95937 * 1 2 3 28 28 H 1.09003 * 109.47142 * 155.96378 * 1 2 3 29 29 H 1.08999 * 109.46739 * 30.00073 * 3 2 1 30 30 H 1.08993 * 109.47319 * 150.00291 * 3 2 1 31 31 H 1.08999 * 109.47045 * 299.99378 * 4 3 2 32 32 H 1.09003 * 109.47674 * 59.99437 * 4 3 2 33 33 H 1.09003 * 109.47630 * 299.99947 * 5 4 3 34 34 H 1.09000 * 109.47587 * 59.99866 * 5 4 3 35 35 H 0.96998 * 119.99631 * 0.02562 * 6 5 4 36 36 H 1.09005 * 109.46980 * 300.00484 * 9 7 6 37 37 H 1.08993 * 109.47087 * 60.00725 * 9 7 6 38 38 H 0.97000 * 119.99821 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.47013 * 305.81209 * 22 21 19 40 40 H 1.08998 * 109.47021 * 65.80858 * 22 21 19 41 41 H 1.08994 * 117.50485 * 359.97438 * 24 21 19 42 42 H 1.09007 * 117.49669 * 145.01915 * 24 21 19 43 43 H 1.09003 * 117.49767 * 214.97494 * 25 21 19 44 44 H 1.08996 * 117.49751 * 359.96993 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2169 3.0356 -1.4426 6 7 3.4616 3.4583 -2.8238 7 6 4.1233 4.6063 -3.0701 8 8 4.5167 5.2892 -2.1482 9 6 4.3744 5.0413 -4.4910 10 16 5.2790 6.6091 -4.4909 11 6 5.4313 6.8744 -6.2261 12 1 5.0180 6.1578 -6.9204 13 6 6.0825 8.0045 -6.7010 14 7 6.1958 8.2029 -7.9973 15 14 6.7968 9.2445 -5.5003 16 1 8.1992 8.8741 -5.1819 17 1 6.7687 10.5978 -6.1110 18 1 5.9903 9.2473 -4.2533 19 6 2.1389 -1.1672 0.0005 20 8 3.3499 -1.1682 -0.0658 21 6 1.3874 -2.4712 0.0771 22 6 0.6010 -2.8544 -1.1783 23 9 -0.1485 -4.0081 -0.9250 24 6 0.7932 -2.8656 1.4307 25 6 2.0193 -3.6042 0.8881 26 1 -0.3633 0.1067 1.0222 27 1 -0.3633 0.8317 -0.6034 28 1 -0.3633 -0.9386 -0.4186 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1383 0.5137 31 1 3.0415 0.9508 -1.9564 32 1 1.5000 1.8407 -1.9564 33 1 2.6276 3.7952 -0.9288 34 1 4.1694 2.9058 -0.9287 35 1 3.1466 2.9123 -3.5610 36 1 4.9641 4.2819 -5.0046 37 1 3.4221 5.1710 -5.0049 38 1 6.6506 8.9929 -8.3291 39 1 -0.0686 -2.0385 -1.4506 40 1 1.2945 -3.0441 -1.9975 41 1 0.9462 -2.1823 2.2659 42 1 -0.1577 -3.3985 1.4268 43 1 1.8745 -4.6227 0.5276 44 1 2.9788 -3.4066 1.3659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:54 Heat of formation + Delta-G solvation = -122.234514 kcal Electronic energy + Delta-G solvation = -25208.797270 eV Core-core repulsion = 21201.764085 eV Total energy + Delta-G solvation = -4007.033185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.77088 -41.40265 -40.64394 -37.89889 -37.19683 -36.05847 -34.67717 -33.10230 -30.85162 -29.30081 -27.94096 -27.80304 -26.71640 -23.70087 -23.51159 -22.47696 -21.74662 -19.94992 -19.86428 -18.34213 -17.87200 -17.75747 -17.25415 -17.12652 -17.04330 -16.92460 -16.68036 -16.28021 -15.84854 -15.69684 -15.56929 -15.08308 -14.90848 -14.63572 -14.24182 -14.11211 -13.94710 -13.44540 -13.39914 -13.30828 -13.22075 -13.01569 -13.00393 -12.71572 -12.60868 -12.51275 -12.39375 -11.87099 -11.84791 -11.55327 -11.17668 -11.10914 -11.03562 -10.91929 -10.54609 -10.16311 -9.79061 -9.00486 -8.52059 -6.23026 0.98099 1.31349 1.34719 1.46447 1.54490 1.55397 1.79738 2.23298 2.27969 2.50681 2.71450 2.86115 3.28891 3.36159 3.61078 3.73367 3.80565 3.84124 3.92241 3.96566 4.14348 4.17981 4.21842 4.37664 4.40853 4.46033 4.55070 4.62194 4.65307 4.66116 4.71565 4.78533 4.89295 5.00290 5.03817 5.10282 5.10869 5.38811 5.45621 5.70200 6.10881 6.24287 6.44325 6.93050 7.01140 7.17189 8.60239 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.001699 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.805768 B =16479.615368 C =16817.067162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.604 5.604 3 C 0.117 3.883 4 C -0.129 4.129 5 C 0.124 3.876 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.563 6.563 9 C -0.112 4.112 10 S -0.177 6.177 11 C -0.530 4.530 12 H 0.063 0.937 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.915 3.085 16 H -0.263 1.263 17 H -0.258 1.258 18 H -0.236 1.236 19 C 0.549 3.451 20 O -0.574 6.574 21 C -0.207 4.207 22 C 0.102 3.898 23 F -0.214 7.214 24 C -0.129 4.129 25 C -0.151 4.151 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.277 0.723 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.317 -24.885 19.249 36.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.335 5.335 3 C -0.006 4.006 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.367 5.367 7 C 0.319 3.681 8 O -0.442 6.442 9 C -0.263 4.263 10 S 0.050 5.950 11 C -0.677 4.677 12 H 0.081 0.919 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.182 1.182 18 H -0.160 1.160 19 C 0.337 3.663 20 O -0.453 6.453 21 C -0.210 4.210 22 C 0.047 3.953 23 F -0.195 7.195 24 C -0.166 4.166 25 C -0.188 4.188 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.032 -23.678 20.608 36.200 hybrid contribution 0.241 -0.393 -1.619 1.683 sum -17.791 -24.070 18.989 35.447 Atomic orbital electron populations 1.22341 0.76706 1.05010 1.04004 1.47869 1.08638 1.04869 1.72104 1.21399 0.98002 0.85020 0.96189 1.21983 1.01477 0.94913 0.98463 1.21270 1.00012 0.96419 0.82271 1.45730 1.57971 1.22960 1.09992 1.19966 0.77190 0.81107 0.89790 1.90690 1.51752 1.54956 1.46793 1.23277 1.05233 1.00431 0.97322 1.84714 1.74577 1.26676 1.09045 1.22464 1.42869 1.11847 0.90538 0.91915 1.25575 0.94879 0.98920 0.96673 1.70016 1.42475 1.29225 1.13695 0.85860 0.80458 0.79296 0.80710 1.18822 1.18244 1.16020 1.19662 0.86575 0.84814 0.75257 1.90731 1.15989 1.87682 1.50938 1.22044 1.06469 0.95407 0.97099 1.21546 0.93886 0.85359 0.94463 1.92767 1.78316 1.52866 1.95526 1.23182 0.98845 1.02011 0.92570 1.23063 0.98177 0.96243 1.01304 0.90715 0.88911 0.89324 0.87191 0.91589 0.92046 0.88592 0.90867 0.92983 0.74676 0.87042 0.86541 0.91360 0.86926 0.89655 0.87636 0.85666 0.86771 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.17 10.15 127.77 1.30 1.47 16 2 N -0.60 -6.34 2.87 -846.78 -2.43 -8.77 16 3 C 0.12 1.39 5.41 86.38 0.47 1.85 16 4 C -0.13 -1.64 5.65 30.59 0.17 -1.47 16 5 C 0.12 2.40 5.67 86.38 0.49 2.89 16 6 N -0.71 -16.30 5.56 -463.05 -2.57 -18.87 16 7 C 0.53 18.21 7.85 87.66 0.69 18.90 16 8 O -0.56 -24.07 15.86 -3.03 -0.05 -24.12 16 9 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 10 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 11 C -0.53 -30.90 10.04 67.96 0.68 -30.22 16 12 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 13 C 0.04 2.65 5.50 84.86 0.47 3.11 16 14 N -0.92 -55.84 13.97 21.65 0.30 -55.54 16 15 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 16 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 19 C 0.55 8.91 6.90 87.66 0.60 9.52 16 20 O -0.57 -14.98 16.46 -3.04 -0.05 -15.03 16 21 C -0.21 -2.29 1.42 -52.93 -0.08 -2.36 16 22 C 0.10 0.81 7.27 71.98 0.52 1.33 16 23 F -0.21 -2.33 15.94 44.97 0.72 -1.61 16 24 C -0.13 -1.00 9.49 30.62 0.29 -0.71 16 25 C -0.15 -1.81 9.54 30.62 0.29 -1.52 16 26 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.09 0.01 8.11 -2.39 -0.02 -0.01 16 28 H 0.09 0.09 4.04 -2.39 -0.01 0.08 16 29 H 0.11 0.77 8.07 -2.39 -0.02 0.75 16 30 H 0.07 1.12 7.47 -2.39 -0.02 1.11 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.42 6.84 8.47 -92.71 -0.79 6.05 16 36 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.11 0.33 5.65 -2.39 -0.01 0.31 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.13 0.65 7.61 -2.38 -0.02 0.63 16 43 H 0.11 1.20 7.95 -2.39 -0.02 1.18 16 44 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -81.66 384.04 3.30 -78.36 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.19 Total: 9.50 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.34 Total: -0.95 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -4.70 Total: -83.19 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.10 Total: -39.15 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.72 Total: -1.61 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -81.66 3.30 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.877 kcal (2) G-P(sol) polarization free energy of solvation -81.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds