Wall clock time and date at job start Tue Mar 31 2020 16:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99560 * 2 1 4 4 C 1.53005 * 109.47341 * 90.45851 * 3 2 1 5 5 H 1.09000 * 112.77497 * 316.20462 * 4 3 2 6 6 C 1.53758 * 113.54794 * 87.05741 * 4 3 2 7 7 C 1.53498 * 83.25571 * 140.99148 * 6 4 3 8 8 N 1.47065 * 87.98540 * 333.76087 * 7 6 4 9 9 C 1.34777 * 136.06164 * 207.08628 * 8 7 6 10 10 O 1.21277 * 120.00182 * 174.40820 * 9 8 7 11 11 C 1.50700 * 119.99623 * 354.40825 * 9 8 7 12 12 C 1.53003 * 109.46894 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47145 * 180.02562 * 12 11 9 14 14 F 1.39905 * 109.47430 * 180.02562 * 13 12 11 15 15 C 1.34768 * 120.00432 * 179.97438 * 2 1 3 16 16 O 1.21283 * 120.00307 * 180.02562 * 15 2 1 17 17 C 1.50701 * 120.00016 * 0.02562 * 15 2 1 18 18 S 1.80999 * 109.47056 * 179.97438 * 17 15 2 19 19 C 1.76206 * 99.99884 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99594 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00064 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99908 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99891 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47061 * 60.00313 * 23 21 19 25 25 H 1.48501 * 109.46767 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47135 * 299.99920 * 23 21 19 27 27 H 1.09007 * 109.47285 * 87.11974 * 1 2 3 28 28 H 1.09001 * 109.46999 * 207.10916 * 1 2 3 29 29 H 1.08993 * 109.48066 * 327.11320 * 1 2 3 30 30 H 1.08998 * 109.47510 * 330.45730 * 3 2 1 31 31 H 1.09004 * 109.47196 * 210.45545 * 3 2 1 32 32 H 1.08995 * 114.39974 * 27.42825 * 6 4 3 33 33 H 1.08996 * 114.08771 * 254.52449 * 6 4 3 34 34 H 1.09006 * 113.46535 * 218.98520 * 7 6 4 35 35 H 1.08996 * 113.47130 * 88.53895 * 7 6 4 36 36 H 1.09003 * 109.47017 * 60.00175 * 11 9 8 37 37 H 1.08994 * 109.47526 * 299.99865 * 11 9 8 38 38 H 1.09003 * 109.46944 * 60.00377 * 12 11 9 39 39 H 1.08993 * 109.47644 * 300.00408 * 12 11 9 40 40 H 1.09003 * 109.47528 * 300.00306 * 13 12 11 41 41 H 1.09003 * 109.46996 * 60.00281 * 13 12 11 42 42 H 1.09001 * 109.47060 * 300.00255 * 17 15 2 43 43 H 1.09002 * 109.46810 * 60.00348 * 17 15 2 44 44 H 0.97005 * 120.00327 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4624 1.7048 1.4425 5 1 1.5928 1.5794 2.0877 6 6 3.7539 1.1169 2.0345 7 6 3.8848 2.5104 2.6646 8 7 3.0834 3.0337 1.5480 9 6 2.9656 4.2135 0.9072 10 8 2.2596 4.3023 -0.0749 11 6 3.7111 5.4224 1.4112 12 6 3.4063 6.6214 0.5110 13 6 4.1636 7.8485 1.0222 14 9 3.8845 8.9451 0.1994 15 6 2.1389 -1.1671 0.0005 16 8 3.3517 -1.1670 0.0010 17 6 1.3855 -2.4722 0.0005 18 16 2.5618 -3.8479 0.0005 19 6 1.4418 -5.2082 -0.0003 20 1 0.3765 -5.0304 -0.0010 21 6 1.9286 -6.5080 0.0001 22 7 3.2269 -6.7245 0.0004 23 14 0.7411 -7.9500 -0.0015 24 1 -0.1125 -7.8870 -1.2150 25 1 1.5074 -9.2221 -0.0015 26 1 -0.1152 -7.8874 1.2100 27 1 -0.3634 0.0516 -1.0264 28 1 -0.3633 -0.9148 0.4683 29 1 -0.3635 0.8629 0.5579 30 1 1.6048 2.0305 -0.5067 31 1 3.1463 1.1406 -0.5209 32 1 4.5227 0.8858 1.2972 33 1 3.5887 0.3149 2.7539 34 1 4.9078 2.8864 2.6782 35 1 3.3902 2.5976 3.6320 36 1 4.7822 5.2207 1.3969 37 1 3.3967 5.6441 2.4310 38 1 2.3352 6.8232 0.5249 39 1 3.7209 6.3995 -0.5087 40 1 3.8494 8.0707 2.0420 41 1 5.2346 7.6464 1.0079 42 1 0.7584 -2.5298 0.8903 43 1 0.7592 -2.5302 -0.8898 44 1 3.5672 -7.6329 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001289937296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:27 Heat of formation + Delta-G solvation = -112.160793 kcal Electronic energy + Delta-G solvation = -25732.170200 eV Core-core repulsion = 21725.573845 eV Total energy + Delta-G solvation = -4006.596355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.55499 -41.76275 -40.57306 -39.02787 -36.54636 -34.98653 -34.57240 -32.10537 -30.97994 -29.29474 -27.97544 -27.67776 -27.19609 -24.37111 -23.63459 -22.24312 -20.70122 -19.90358 -19.51853 -18.26456 -17.98392 -17.50555 -17.44188 -17.08521 -16.87036 -16.84728 -16.33050 -16.13382 -15.82095 -15.62541 -15.43491 -14.69852 -14.45642 -14.34184 -14.21769 -14.11294 -13.80517 -13.63146 -13.44395 -13.22714 -13.13714 -12.91262 -12.86616 -12.78975 -12.60269 -12.47480 -12.42504 -12.01890 -11.73507 -11.62686 -11.55256 -11.11872 -10.93683 -10.75963 -10.25444 -9.93200 -9.60140 -8.64761 -8.33453 -6.10973 1.24741 1.43908 1.44496 1.53310 1.55994 1.58218 1.73112 2.20682 2.29126 3.00610 3.24019 3.29254 3.48437 3.69903 3.73250 3.83209 3.88678 3.95988 4.06439 4.09820 4.19901 4.24070 4.30427 4.38547 4.44863 4.47392 4.50196 4.55458 4.58955 4.63935 4.69681 4.78663 4.87415 4.94340 4.98985 5.00441 5.25702 5.27095 5.42789 5.48103 6.20429 6.24894 6.72283 7.07812 7.08023 7.14110 8.75288 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.001938 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.454859 B =14443.727392 C =14769.162797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.114 3.886 5 H 0.109 0.891 6 C -0.147 4.147 7 C 0.114 3.886 8 N -0.645 5.645 9 C 0.531 3.469 10 O -0.586 6.586 11 C -0.121 4.121 12 C -0.137 4.137 13 C 0.060 3.940 14 F -0.241 7.241 15 C 0.533 3.467 16 O -0.551 6.551 17 C -0.125 4.125 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.261 1.261 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 25.987 9.480 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C -0.003 4.003 4 C 0.009 3.991 5 H 0.127 0.873 6 C -0.185 4.185 7 C -0.008 4.008 8 N -0.380 5.380 9 C 0.323 3.677 10 O -0.467 6.467 11 C -0.160 4.160 12 C -0.175 4.175 13 C 0.005 3.995 14 F -0.222 7.222 15 C 0.320 3.680 16 O -0.428 6.428 17 C -0.276 4.276 18 S 0.083 5.917 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.185 1.185 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.685 26.187 8.830 27.644 hybrid contribution -1.945 -1.121 -0.533 2.307 sum -2.630 25.066 8.298 26.534 Atomic orbital electron populations 1.22075 0.77035 1.04693 1.03202 1.47765 1.08338 1.04393 1.73933 1.21510 0.97441 0.84467 0.96886 1.23239 0.98438 0.80862 0.96543 0.87341 1.23422 0.96644 0.97684 1.00753 1.23181 0.97660 0.89523 0.90404 1.49926 1.43222 1.09332 1.35566 1.20992 0.81307 0.83133 0.82288 1.90697 1.43227 1.84750 1.27997 1.21502 1.02631 0.89866 1.01989 1.21856 1.01578 0.94085 1.00020 1.22213 1.02036 0.81387 0.93819 1.92734 1.95712 1.57580 1.76203 1.20117 0.87443 0.85103 0.75294 1.90669 1.15120 1.87256 1.49741 1.23387 1.02838 0.95074 1.06299 1.85509 1.12284 0.96925 1.97013 1.23173 0.94684 0.92763 1.58920 0.90011 1.26090 0.97541 1.01603 0.93771 1.70168 1.14034 1.22503 1.47948 0.85039 0.77686 0.76032 0.79469 1.18893 1.20426 1.18531 0.91634 0.89657 0.89036 0.89600 0.92242 0.90452 0.89407 0.87708 0.86680 0.86129 0.85443 0.91741 0.92226 0.88052 0.88423 0.87110 0.88015 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 10.29 127.77 1.31 2.71 16 2 N -0.61 -16.83 2.87 -846.76 -2.43 -19.26 16 3 C 0.12 3.23 5.17 86.38 0.45 3.68 16 4 C 0.11 2.36 4.29 41.88 0.18 2.54 16 5 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.15 -2.93 7.36 31.02 0.23 -2.70 16 7 C 0.11 1.24 8.41 83.18 0.70 1.94 16 8 N -0.64 -11.28 3.56 -833.22 -2.97 -14.25 16 9 C 0.53 10.35 8.00 87.66 0.70 11.05 16 10 O -0.59 -16.81 15.31 -3.02 -0.05 -16.86 16 11 C -0.12 -1.14 5.53 29.85 0.17 -0.97 16 12 C -0.14 -1.78 4.96 30.59 0.15 -1.63 16 13 C 0.06 0.52 7.55 71.98 0.54 1.06 16 14 F -0.24 -4.17 17.36 44.97 0.78 -3.38 16 15 C 0.53 19.60 7.69 87.66 0.67 20.28 16 16 O -0.55 -24.37 14.69 -3.04 -0.04 -24.41 16 17 C -0.12 -4.90 4.67 71.24 0.33 -4.57 16 18 S -0.14 -7.88 20.57 -56.49 -1.16 -9.04 16 19 C -0.55 -30.86 9.50 67.95 0.65 -30.22 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.84 5.49 84.86 0.47 1.30 16 22 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 23 Si 1.00 43.07 29.55 68.60 2.03 45.09 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 27 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 1.56 6.33 -2.39 -0.02 1.54 16 29 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.09 2.36 6.91 -2.39 -0.02 2.35 16 31 H 0.06 1.93 7.18 -2.39 -0.02 1.92 16 32 H 0.08 2.00 7.87 -2.39 -0.02 1.98 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 3.85 7.41 -2.39 -0.02 3.84 16 43 H 0.10 3.72 8.11 -2.39 -0.02 3.70 16 44 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -82.34 384.87 3.98 -78.36 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.99 Total: 14.29 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.55 Total: 4.47 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -5.12 Total: -88.51 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.09 Total: -41.27 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -82.34 3.98 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289937296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.804 kcal (2) G-P(sol) polarization free energy of solvation -82.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds