Wall clock time and date at job start Tue Mar 31 2020 16:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08990 * 109.47637 * 2 1 4 4 C 1.53004 * 109.47115 * 239.99243 * 2 1 3 5 5 C 1.53004 * 109.47035 * 175.00205 * 4 2 1 6 6 N 1.46501 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99867 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99740 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99932 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47214 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00113 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00219 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00016 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46900 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47234 * 119.99460 * 15 13 11 18 18 H 1.48494 * 109.47192 * 239.99783 * 15 13 11 19 19 N 1.46509 * 109.47030 * 119.99818 * 2 1 3 20 20 C 1.34782 * 119.99685 * 274.99686 * 19 2 1 21 21 O 1.21281 * 119.99895 * 5.26458 * 20 19 2 22 22 C 1.50691 * 119.99910 * 185.26038 * 20 19 2 23 23 C 1.53005 * 115.56198 * 269.79521 * 22 20 19 24 24 F 1.39897 * 109.47022 * 329.29534 * 23 22 20 25 25 C 1.53009 * 117.50056 * 55.47924 * 22 20 19 26 26 C 1.53005 * 60.02664 * 107.48040 * 25 22 20 27 27 H 1.09003 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47138 * 300.00447 * 1 2 3 29 29 H 1.09004 * 109.47072 * 60.00421 * 1 2 3 30 30 H 1.08999 * 109.47147 * 295.00280 * 4 2 1 31 31 H 1.08993 * 109.46964 * 55.00315 * 4 2 1 32 32 H 1.08999 * 109.47215 * 300.00034 * 5 4 2 33 33 H 1.08993 * 109.47155 * 60.00227 * 5 4 2 34 34 H 0.97004 * 119.99739 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.46952 * 299.99769 * 9 7 6 36 36 H 1.09002 * 109.47035 * 59.99550 * 9 7 6 37 37 H 0.96994 * 120.00682 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00289 * 94.99786 * 19 2 1 39 39 H 1.08999 * 109.47366 * 89.29708 * 23 22 20 40 40 H 1.09011 * 109.46839 * 209.29964 * 23 22 20 41 41 H 1.08997 * 117.50136 * 214.97814 * 25 22 20 42 42 H 1.08997 * 117.49648 * 359.97438 * 25 22 20 43 43 H 1.08997 * 117.49849 * 107.50949 * 26 25 22 44 44 H 1.09006 * 117.49445 * 252.52149 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3038 -2.5100 7 6 5.3740 -1.3400 -2.7752 8 8 6.1583 -0.8007 -2.0236 9 6 5.8763 -2.0505 -4.0056 10 16 7.6802 -1.9227 -4.0819 11 6 7.9871 -2.8115 -5.5720 12 1 7.1635 -3.2345 -6.1279 13 6 9.2875 -2.9690 -6.0308 14 7 10.2915 -2.4539 -5.3531 15 14 9.6131 -3.9119 -7.6102 16 1 8.3255 -4.3869 -8.1775 17 1 10.2868 -3.0209 -8.5888 18 1 10.4856 -5.0778 -7.3198 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0181 2.3572 21 8 1.7696 1.1317 2.4370 22 6 2.7599 -0.6949 3.5560 23 6 1.7785 -1.4245 4.4756 24 9 0.5386 -0.7775 4.4417 25 6 4.1550 -1.3006 3.3890 26 6 3.9703 -0.0205 4.2063 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.7516 -1.7717 -1.2054 31 1 1.6054 -0.2620 -2.1369 32 1 3.8532 0.4367 -1.3574 33 1 3.9994 -1.0729 -0.4259 34 1 3.4257 -1.7354 -3.1109 35 1 5.5876 -3.1006 -3.9619 36 1 5.4419 -1.5908 -4.8933 37 1 11.2003 -2.5635 -5.6739 38 1 2.2490 -1.6318 1.1528 39 1 1.6605 -2.4540 4.1375 40 1 2.1635 -1.4188 5.4955 41 1 4.3737 -2.2187 3.9342 42 1 4.6293 -1.2099 2.4118 43 1 4.0676 -0.0964 5.2893 44 1 4.3229 0.9126 3.7667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295826268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:39 Heat of formation + Delta-G solvation = -114.068384 kcal Electronic energy + Delta-G solvation = -25594.483017 eV Core-core repulsion = 21587.803943 eV Total energy + Delta-G solvation = -4006.679075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.00385 -40.47686 -39.22521 -37.60426 -36.51572 -34.46136 -32.45548 -31.84963 -30.10206 -28.22055 -28.15512 -25.52369 -24.57935 -23.24159 -22.92186 -21.28868 -20.38509 -20.06721 -17.90013 -17.59500 -16.84860 -16.42405 -16.30753 -16.17582 -15.99041 -15.74736 -15.36710 -14.83032 -14.67346 -14.53071 -14.16812 -13.96358 -13.87094 -13.72432 -13.22445 -12.87061 -12.60014 -12.42255 -12.30272 -12.22836 -12.17989 -11.88548 -11.66105 -11.57111 -11.28045 -11.09245 -11.04669 -10.99866 -10.77879 -10.57574 -10.04834 -9.83452 -9.50750 -9.38542 -9.10516 -8.94035 -8.26275 -6.53046 -6.24399 -3.95142 2.28109 2.68261 2.98639 3.05359 3.06872 3.19515 3.26016 3.30328 3.65330 3.81625 4.17010 4.17713 4.25230 4.35516 4.45246 4.54500 4.56199 4.70344 4.74631 5.04313 5.05168 5.07512 5.10928 5.16848 5.19932 5.28248 5.33532 5.39335 5.44697 5.57478 5.59768 5.63552 5.73151 5.85584 5.86069 5.91302 6.10158 6.17418 6.54714 7.15721 7.57229 7.64951 7.91400 8.32764 8.56521 9.21096 10.83087 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.002013 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.684113 B =13907.583430 C =14718.100146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.721 5.721 20 C 0.559 3.441 21 O -0.524 6.524 22 C -0.205 4.205 23 C 0.111 3.889 24 F -0.208 7.208 25 C -0.153 4.153 26 C -0.137 4.137 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.401 0.599 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.606 -0.445 16.365 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 N -0.373 5.373 20 C 0.343 3.657 21 O -0.399 6.399 22 C -0.209 4.209 23 C 0.056 3.944 24 F -0.189 7.189 25 C -0.190 4.190 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.389 1.366 17.680 26.275 hybrid contribution -0.936 -1.903 -2.225 3.074 sum -20.326 -0.537 15.455 25.540 Atomic orbital electron populations 1.22162 0.94687 1.02312 1.02924 1.20907 0.94353 0.97553 0.82996 0.89037 1.22135 0.95418 1.01987 0.98245 1.21252 0.92625 0.97987 0.88426 1.46007 1.07840 1.58607 1.27058 1.20326 0.81466 0.79698 0.86822 1.90706 1.54960 1.44355 1.49084 1.23529 1.06887 1.02522 0.97464 1.85410 0.92139 1.72763 1.33140 1.22902 0.95481 1.40060 1.09868 0.90874 1.25001 0.95061 0.95662 0.97918 1.70023 0.99365 1.42632 1.38251 0.86111 0.78403 0.79265 0.81677 1.19622 1.20550 1.20561 1.46067 1.67671 1.14074 1.09508 1.19175 0.77730 0.86027 0.82740 1.90712 1.48055 1.17619 1.83478 1.22183 0.92004 1.07291 0.99431 1.21402 0.78707 0.94815 0.99501 1.92821 1.44333 1.83891 1.97818 1.23187 0.94108 0.98280 1.03467 1.23128 0.96481 0.97721 1.00084 0.92360 0.91689 0.91416 0.90479 0.89331 0.91580 0.91705 0.76821 0.89239 0.89220 0.92214 0.76412 0.89856 0.89637 0.87243 0.87233 0.87364 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.15 0.35 -0.84 16 2 C 0.15 1.16 2.54 -67.93 -0.17 0.99 16 3 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 4 C -0.14 -0.93 4.87 -26.73 -0.13 -1.06 16 5 C 0.12 1.27 5.56 -4.04 -0.02 1.24 16 6 N -0.74 -9.00 5.56 -60.30 -0.33 -9.33 16 7 C 0.53 9.52 7.85 -10.99 -0.09 9.43 16 8 O -0.52 -11.47 15.86 5.56 0.09 -11.38 16 9 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.53 -15.04 9.50 30.94 0.29 -14.75 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 15 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 N -0.72 -5.76 4.53 -53.81 -0.24 -6.00 16 20 C 0.56 5.89 6.24 -10.99 -0.07 5.82 16 21 O -0.52 -7.68 16.76 5.56 0.09 -7.59 16 22 C -0.21 -1.59 2.38 -155.62 -0.37 -1.97 16 23 C 0.11 0.70 7.69 37.16 0.29 0.99 16 24 F -0.21 -2.16 16.66 2.25 0.04 -2.12 16 25 C -0.15 -0.94 9.95 -26.72 -0.27 -1.21 16 26 C -0.14 -0.99 9.88 -26.69 -0.26 -1.25 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.72 7.75 -51.93 -0.40 0.31 16 34 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.40 2.35 8.61 -40.82 -0.35 1.99 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.36 7.88 -51.92 -0.41 -0.05 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 0.57 8.04 -51.93 -0.42 0.15 16 44 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -37.60 393.79 -8.19 -45.79 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.94 Total: 1.02 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.32 Total: -3.41 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.16 Total: -40.54 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.60 -8.19 -45.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295826268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.279 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds