Wall clock time and date at job start Tue Mar 31 2020 16:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08990 * 109.47637 * 2 1 4 4 C 1.53004 * 109.47115 * 239.99243 * 2 1 3 5 5 C 1.53004 * 109.47035 * 175.00205 * 4 2 1 6 6 N 1.46501 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99867 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99740 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99932 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47214 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00113 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00219 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00016 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46900 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47234 * 119.99460 * 15 13 11 18 18 H 1.48494 * 109.47192 * 239.99783 * 15 13 11 19 19 N 1.46509 * 109.47030 * 119.99818 * 2 1 3 20 20 C 1.34782 * 119.99685 * 274.99686 * 19 2 1 21 21 O 1.21281 * 119.99895 * 5.26458 * 20 19 2 22 22 C 1.50691 * 119.99910 * 185.26038 * 20 19 2 23 23 C 1.53005 * 115.56198 * 269.79521 * 22 20 19 24 24 F 1.39897 * 109.47022 * 329.29534 * 23 22 20 25 25 C 1.53009 * 117.50056 * 55.47924 * 22 20 19 26 26 C 1.53005 * 60.02664 * 107.48040 * 25 22 20 27 27 H 1.09003 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47138 * 300.00447 * 1 2 3 29 29 H 1.09004 * 109.47072 * 60.00421 * 1 2 3 30 30 H 1.08999 * 109.47147 * 295.00280 * 4 2 1 31 31 H 1.08993 * 109.46964 * 55.00315 * 4 2 1 32 32 H 1.08999 * 109.47215 * 300.00034 * 5 4 2 33 33 H 1.08993 * 109.47155 * 60.00227 * 5 4 2 34 34 H 0.97004 * 119.99739 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.46952 * 299.99769 * 9 7 6 36 36 H 1.09002 * 109.47035 * 59.99550 * 9 7 6 37 37 H 0.96994 * 120.00682 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00289 * 94.99786 * 19 2 1 39 39 H 1.08999 * 109.47366 * 89.29708 * 23 22 20 40 40 H 1.09011 * 109.46839 * 209.29964 * 23 22 20 41 41 H 1.08997 * 117.50136 * 214.97814 * 25 22 20 42 42 H 1.08997 * 117.49648 * 359.97438 * 25 22 20 43 43 H 1.08997 * 117.49849 * 107.50949 * 26 25 22 44 44 H 1.09006 * 117.49445 * 252.52149 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3038 -2.5100 7 6 5.3740 -1.3400 -2.7752 8 8 6.1583 -0.8007 -2.0236 9 6 5.8763 -2.0505 -4.0056 10 16 7.6802 -1.9227 -4.0819 11 6 7.9871 -2.8115 -5.5720 12 1 7.1635 -3.2345 -6.1279 13 6 9.2875 -2.9690 -6.0308 14 7 10.2915 -2.4539 -5.3531 15 14 9.6131 -3.9119 -7.6102 16 1 8.3255 -4.3869 -8.1775 17 1 10.2868 -3.0209 -8.5888 18 1 10.4856 -5.0778 -7.3198 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0181 2.3572 21 8 1.7696 1.1317 2.4370 22 6 2.7599 -0.6949 3.5560 23 6 1.7785 -1.4245 4.4756 24 9 0.5386 -0.7775 4.4417 25 6 4.1550 -1.3006 3.3890 26 6 3.9703 -0.0205 4.2063 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.7516 -1.7717 -1.2054 31 1 1.6054 -0.2620 -2.1369 32 1 3.8532 0.4367 -1.3574 33 1 3.9994 -1.0729 -0.4259 34 1 3.4257 -1.7354 -3.1109 35 1 5.5876 -3.1006 -3.9619 36 1 5.4419 -1.5908 -4.8933 37 1 11.2003 -2.5635 -5.6739 38 1 2.2490 -1.6318 1.1528 39 1 1.6605 -2.4540 4.1375 40 1 2.1635 -1.4188 5.4955 41 1 4.3737 -2.2187 3.9342 42 1 4.6293 -1.2099 2.4118 43 1 4.0676 -0.0964 5.2893 44 1 4.3229 0.9126 3.7667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295826268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:39 Heat of formation + Delta-G solvation = -141.715306 kcal Electronic energy + Delta-G solvation = -25595.681878 eV Core-core repulsion = 21587.803943 eV Total energy + Delta-G solvation = -4007.877935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.64686 -41.24827 -40.56568 -38.27675 -37.37038 -35.59314 -34.57819 -32.73266 -31.30325 -29.22363 -28.71651 -27.64843 -25.30733 -24.06443 -23.46812 -22.12221 -21.53921 -20.83769 -19.81966 -18.31294 -17.77999 -17.55864 -17.22906 -17.00320 -16.87389 -16.77699 -16.60552 -16.37007 -15.83465 -15.40631 -15.29031 -15.09342 -14.77869 -14.50665 -14.45250 -14.44483 -13.59467 -13.55073 -13.15250 -13.07254 -12.98530 -12.91380 -12.75205 -12.63834 -12.48360 -12.40958 -12.36142 -11.96421 -11.69806 -11.55861 -11.15453 -11.08966 -10.97001 -10.85315 -10.26094 -10.22850 -10.07705 -8.66060 -8.34298 -6.12178 1.28084 1.42054 1.48313 1.49563 1.58999 1.62159 2.04082 2.25542 2.29879 2.51004 3.00079 3.28179 3.32534 3.57563 3.71325 3.74434 3.78574 3.86333 4.02497 4.08038 4.14230 4.31518 4.32869 4.39244 4.44789 4.53041 4.55623 4.59993 4.67317 4.77248 4.83172 4.86821 4.92180 5.01500 5.10715 5.10973 5.28414 5.42509 5.43266 5.49014 6.20726 6.47371 6.52840 7.07347 7.17844 7.26317 8.75120 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.002013 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.684113 B =13907.583430 C =14718.100146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.129 4.129 10 S -0.155 6.155 11 C -0.543 4.543 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.256 1.256 17 H -0.276 1.276 18 H -0.274 1.274 19 N -0.710 5.710 20 C 0.549 3.451 21 O -0.577 6.577 22 C -0.213 4.213 23 C 0.105 3.895 24 F -0.234 7.234 25 C -0.133 4.133 26 C -0.150 4.150 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.419 0.581 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.540 -3.093 15.385 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.159 4.159 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.280 4.280 10 S 0.072 5.928 11 C -0.691 4.691 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.199 1.199 19 N -0.362 5.362 20 C 0.335 3.665 21 O -0.456 6.456 22 C -0.217 4.217 23 C 0.050 3.950 24 F -0.215 7.215 25 C -0.170 4.170 26 C -0.188 4.188 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.257 0.743 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.113 0.887 43 H 0.149 0.851 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.388 -1.330 16.676 27.153 hybrid contribution -0.427 -1.029 -1.871 2.178 sum -21.815 -2.359 14.805 26.470 Atomic orbital electron populations 1.22086 0.93728 1.03202 1.02295 1.20908 0.95004 0.96538 0.83549 0.91721 1.22032 0.92038 1.03736 0.98088 1.21353 0.95293 0.96400 0.87266 1.45693 1.06029 1.57217 1.27505 1.20100 0.82969 0.79275 0.85912 1.90700 1.56729 1.46680 1.50519 1.23370 1.00856 1.04511 0.99264 1.85614 0.99863 1.73415 1.33935 1.23232 0.96163 1.39880 1.09849 0.89803 1.26138 0.94751 0.96587 1.01823 1.70188 0.99932 1.44296 1.40442 0.84900 0.78813 0.77592 0.76611 1.17911 1.20103 1.19947 1.46039 1.66594 1.14593 1.08960 1.19760 0.77103 0.85591 0.83997 1.90681 1.50486 1.19919 1.84467 1.22212 0.92784 1.07891 0.98792 1.21773 0.77038 0.95553 1.00645 1.92767 1.46167 1.84609 1.97954 1.23231 0.92177 0.98780 1.02796 1.23228 0.96670 0.97388 1.01482 0.90605 0.94485 0.89922 0.87617 0.87426 0.93740 0.92211 0.74336 0.86891 0.87232 0.92033 0.74871 0.86879 0.87189 0.84215 0.88665 0.85092 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.48 71.98 0.68 -1.38 16 2 C 0.14 2.16 2.54 44.99 0.11 2.28 16 3 H 0.06 1.34 7.66 -2.39 -0.02 1.33 16 4 C -0.12 -1.25 4.87 30.60 0.15 -1.10 16 5 C 0.12 2.34 5.56 86.38 0.48 2.82 16 6 N -0.71 -15.45 5.56 -463.07 -2.57 -18.02 16 7 C 0.53 18.50 7.85 87.66 0.69 19.19 16 8 O -0.57 -25.64 15.86 -3.03 -0.05 -25.68 16 9 C -0.13 -4.84 6.16 71.23 0.44 -4.40 16 10 S -0.16 -8.47 20.57 -56.49 -1.16 -9.63 16 11 C -0.54 -30.44 9.50 67.95 0.65 -29.80 16 12 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 15 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 N -0.71 -10.83 4.53 -442.53 -2.00 -12.84 16 20 C 0.55 11.87 6.24 87.65 0.55 12.42 16 21 O -0.58 -18.07 16.76 -3.03 -0.05 -18.13 16 22 C -0.21 -3.16 2.38 -52.90 -0.13 -3.29 16 23 C 0.10 1.13 7.69 71.98 0.55 1.68 16 24 F -0.23 -4.76 16.66 44.97 0.75 -4.01 16 25 C -0.13 -1.44 9.95 30.60 0.30 -1.14 16 26 C -0.15 -2.15 9.88 30.62 0.30 -1.85 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.04 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 34 H 0.42 5.79 8.47 -92.71 -0.79 5.01 16 35 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 36 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.41 4.03 8.61 -92.71 -0.80 3.23 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 0.64 7.88 -2.38 -0.02 0.63 16 41 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.13 1.21 8.04 -2.39 -0.02 1.19 16 44 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -87.50 393.79 1.91 -85.60 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.56 Total: 16.49 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.25 Total: -3.45 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.29 Total: -86.11 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.10 Total: -43.81 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.75 Total: -4.01 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -87.50 1.91 -85.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295826268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.119 kcal (2) G-P(sol) polarization free energy of solvation -87.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds