Wall clock time and date at job start Tue Mar 31 2020 17:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48505 * 109.46736 * 240.00171 * 3 2 1 5 5 H 1.48504 * 109.46819 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46918 * 120.00431 * 3 2 1 7 7 C 1.37873 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47155 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47435 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00081 * 179.97438 * 11 10 9 13 13 O 1.21351 * 120.00101 * 0.02562 * 12 11 10 14 14 C 1.49451 * 119.99753 * 180.02562 * 12 11 10 15 15 O 1.21344 * 120.00392 * 0.02562 * 14 12 11 16 16 N 1.34782 * 119.99979 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99951 * 180.02562 * 16 14 12 18 18 C 1.50708 * 109.46884 * 179.97438 * 17 16 14 19 19 C 1.38104 * 119.86340 * 259.99815 * 18 17 16 20 20 C 1.38213 * 119.86289 * 179.97438 * 19 18 17 21 21 C 1.38100 * 119.89792 * 0.09725 * 20 19 18 22 22 C 1.38591 * 120.29915 * 359.97438 * 21 20 19 23 23 C 1.37952 * 119.77967 * 359.84626 * 22 21 20 24 24 C 1.51199 * 121.42554 * 180.48747 * 23 22 21 25 25 C 1.52975 * 109.51248 * 343.03047 * 24 23 22 26 26 O 1.43210 * 108.64357 * 49.17868 * 25 24 23 27 27 C 1.42725 * 113.14202 * 289.20946 * 26 25 24 28 28 H 0.97003 * 119.99757 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47045 * 60.00840 * 9 7 2 30 30 H 1.08994 * 109.47298 * 300.00262 * 9 7 2 31 31 H 1.09009 * 109.46988 * 60.00377 * 10 9 7 32 32 H 1.08999 * 109.47330 * 300.00869 * 10 9 7 33 33 H 0.96999 * 119.99331 * 0.02562 * 11 10 9 34 34 H 0.97005 * 119.99892 * 0.02562 * 16 14 12 35 35 H 1.09001 * 109.47328 * 60.00261 * 17 16 14 36 36 H 1.08994 * 109.47091 * 299.99637 * 17 16 14 37 37 H 1.08008 * 120.07154 * 0.02562 * 19 18 17 38 38 H 1.08005 * 120.05086 * 180.11413 * 20 19 18 39 39 H 1.08001 * 119.84707 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.67940 * 222.93527 * 24 23 22 41 41 H 1.09002 * 109.41883 * 102.96485 * 24 23 22 42 42 H 1.09002 * 109.63645 * 289.37858 * 25 24 23 43 43 H 1.08999 * 109.63529 * 168.97533 * 25 24 23 44 44 H 1.08995 * 109.33751 * 172.01520 * 27 26 25 45 45 H 1.09001 * 109.34303 * 291.69527 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0979 -0.0018 13 8 3.4001 -6.0980 -0.0014 14 6 1.4393 -7.3922 -0.0030 15 8 0.2258 -7.3922 -0.0039 16 7 2.1131 -8.5595 -0.0031 17 6 1.3806 -9.8282 -0.0049 18 6 2.3599 -10.9737 -0.0052 19 6 2.6496 -11.6304 -1.1851 20 6 3.5481 -12.6806 -1.1856 21 6 4.1515 -13.0707 -0.0062 22 6 3.8606 -12.4135 1.1788 23 6 2.9665 -11.3630 1.1780 24 6 2.6303 -10.6130 2.4471 25 6 3.0615 -11.4407 3.6592 26 8 4.4114 -11.8756 3.4599 27 6 4.5357 -12.8717 2.4454 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8896 32 1 2.8719 -3.6043 -0.8904 33 1 0.5427 -4.9307 -0.0019 34 1 3.0832 -8.5595 -0.0020 35 1 0.7549 -9.8853 -0.8956 36 1 0.7530 -9.8866 0.8844 37 1 2.1755 -11.3234 -2.1058 38 1 3.7782 -13.1951 -2.1069 39 1 4.8532 -13.8917 -0.0074 40 1 1.5562 -10.4339 2.4941 41 1 3.1566 -9.6585 2.4542 42 1 2.4087 -12.3075 3.7618 43 1 3.0029 -10.8294 4.5598 44 1 5.5916 -13.0540 2.2459 45 1 4.0682 -13.7953 2.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330924059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:54 Heat of formation + Delta-G solvation = -103.300273 kcal Electronic energy + Delta-G solvation = -27271.260974 eV Core-core repulsion = 23253.065194 eV Total energy + Delta-G solvation = -4018.195781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00226 -40.26614 -38.42637 -37.96610 -35.70972 -34.90980 -33.22584 -32.83376 -32.20998 -30.32354 -29.80975 -27.14138 -26.00841 -25.29515 -24.33115 -23.28162 -21.37622 -21.03640 -20.57300 -20.20429 -18.42679 -17.16662 -17.03426 -16.85507 -16.34455 -16.21366 -15.82369 -15.73119 -15.45115 -15.02242 -14.82171 -14.50595 -14.31487 -14.19285 -13.96305 -13.50513 -13.41442 -13.23886 -13.08687 -12.73991 -12.62537 -12.31954 -12.16972 -12.00498 -11.53486 -11.33810 -11.24424 -11.06740 -11.04744 -10.68646 -10.39176 -10.12631 -9.82066 -9.50525 -9.40091 -9.29787 -9.05113 -9.02991 -8.69809 -8.41627 -6.10087 -4.13863 0.74785 0.88563 1.59731 2.54928 3.24366 3.30737 3.34874 3.37823 3.41665 3.44972 3.95386 4.10228 4.18883 4.26150 4.40438 4.48301 4.51976 4.73054 4.76754 4.82096 4.87598 4.97905 5.01763 5.14827 5.18378 5.26663 5.31914 5.37786 5.49687 5.53205 5.68797 5.99170 6.00887 6.04985 6.14784 6.17936 6.23677 6.49689 6.59262 6.66027 6.69089 7.03039 7.46009 7.57633 7.64839 7.86990 7.90864 8.20919 8.33728 8.91464 9.50982 11.01311 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.001960 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.835323 B =14279.497926 C =14721.854369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.532 6.532 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.701 5.701 17 C 0.159 3.841 18 C -0.108 4.108 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.051 4.051 24 C -0.122 4.122 25 C 0.059 3.941 26 O -0.373 6.373 27 C 0.102 3.898 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -30.778 2.151 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.276 3.724 13 O -0.410 6.410 14 C 0.289 3.711 15 O -0.395 6.395 16 N -0.356 5.356 17 C 0.037 3.963 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.051 4.051 24 C -0.159 4.159 25 C -0.018 4.018 26 O -0.291 6.291 27 C 0.025 3.975 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.143 -30.536 2.264 31.049 hybrid contribution 0.147 0.772 -0.360 0.864 sum 5.289 -29.765 1.904 30.291 Atomic orbital electron populations 1.69950 1.06088 1.27062 1.49972 1.25003 0.94911 0.99442 0.94929 0.86552 0.79490 0.82590 0.78769 1.20097 1.21234 1.20096 1.20974 0.93185 0.90249 1.51850 0.92217 1.19352 0.94180 0.90850 0.98238 1.21940 0.96275 0.80737 1.01346 1.46229 1.11776 1.05771 1.69876 1.19949 0.87716 0.85216 0.79491 1.90741 1.13211 1.87500 1.49570 1.20492 0.87726 0.85496 0.77347 1.90760 1.13397 1.87629 1.47698 1.45805 1.11535 1.04360 1.73861 1.20261 0.92660 0.79766 1.03652 1.19744 0.99648 0.98192 0.93306 1.21109 0.97291 0.95446 0.97345 1.21095 0.97268 0.97519 0.98181 1.21032 0.99585 0.99515 0.91918 1.20239 0.98589 0.97128 0.96469 1.19464 0.95613 0.95304 0.94736 1.21330 1.02730 0.99715 0.92118 1.22655 0.83423 0.97959 0.97759 1.88106 1.27156 1.58138 1.55744 1.21433 1.00996 0.90656 0.84417 0.92716 0.95665 0.95663 0.91844 0.91872 0.75389 0.74980 0.90051 0.89926 0.85429 0.85520 0.85671 0.89163 0.89047 0.92561 0.88003 0.87653 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.45 5.55 -60.73 -0.34 -12.79 16 12 C 0.50 8.52 7.89 -11.59 -0.09 8.43 16 13 O -0.53 -10.12 16.48 5.50 0.09 -10.03 16 14 C 0.51 7.45 7.89 -11.58 -0.09 7.36 16 15 O -0.52 -8.53 16.48 5.50 0.09 -8.43 16 16 N -0.70 -8.04 5.54 -61.91 -0.34 -8.38 16 17 C 0.16 1.49 5.16 -5.19 -0.03 1.46 16 18 C -0.11 -0.93 5.25 -104.55 -0.55 -1.48 16 19 C -0.09 -0.71 9.66 -39.64 -0.38 -1.10 16 20 C -0.12 -0.83 10.05 -39.64 -0.40 -1.23 16 21 C -0.10 -0.69 9.67 -39.50 -0.38 -1.07 16 22 C -0.12 -0.99 5.80 -104.62 -0.61 -1.59 16 23 C -0.05 -0.44 5.79 -104.37 -0.60 -1.04 16 24 C -0.12 -0.99 5.36 -27.65 -0.15 -1.14 16 25 C 0.06 0.43 6.83 37.14 0.25 0.69 16 26 O -0.37 -3.43 10.80 -35.23 -0.38 -3.81 16 27 C 0.10 0.71 6.66 35.99 0.24 0.95 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.41 7.09 7.94 -40.82 -0.32 6.76 16 34 H 0.41 4.66 7.94 -40.82 -0.32 4.34 16 35 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 36 H 0.08 0.75 6.51 -51.93 -0.34 0.42 16 37 H 0.13 0.81 8.03 -52.48 -0.42 0.39 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.09 0.66 6.57 -51.93 -0.34 0.31 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -32.41 380.63 -9.14 -41.55 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.35 Total: 5.59 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.36 Total: -0.33 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.06 Total: -46.53 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.20 Total: -22.28 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.41 -9.14 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330924059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.746 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds