Wall clock time and date at job start Tue Mar 31 2020 16:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99795 * 2 1 4 4 O 1.21286 * 119.99421 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00550 * 0.02562 * 3 2 1 6 6 S 1.80995 * 109.47365 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00196 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00108 * 180.02562 * 7 6 5 10 10 N 1.31628 * 119.99970 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99919 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47237 * 90.00459 * 11 9 7 13 13 H 1.48500 * 109.47092 * 210.00291 * 11 9 7 14 14 H 1.48495 * 109.47311 * 329.99966 * 11 9 7 15 15 C 1.46497 * 119.99664 * 180.02562 * 2 1 3 16 16 C 1.53784 * 113.61569 * 59.99609 * 15 2 1 17 17 C 1.53787 * 87.07923 * 220.01663 * 16 15 2 18 18 N 1.46499 * 113.61622 * 270.88175 * 17 16 15 19 19 C 1.34771 * 119.99903 * 205.00326 * 18 17 16 20 20 O 1.21282 * 120.00369 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99769 * 180.02562 * 19 18 17 22 22 C 1.52999 * 109.47360 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47485 * 179.97438 * 22 21 19 24 24 F 1.39900 * 109.47211 * 180.02562 * 23 22 21 25 25 C 1.53779 * 113.61581 * 322.49829 * 15 2 1 26 26 H 1.09004 * 109.46666 * 269.99777 * 1 2 3 27 27 H 1.08999 * 109.47266 * 29.99467 * 1 2 3 28 28 H 1.08995 * 109.47412 * 150.00054 * 1 2 3 29 29 H 1.08999 * 109.46992 * 300.00301 * 5 3 2 30 30 H 1.08999 * 109.47187 * 59.99659 * 5 3 2 31 31 H 0.97001 * 119.99988 * 179.97438 * 10 9 7 32 32 H 1.09002 * 112.90477 * 191.24656 * 15 2 1 33 33 H 1.09004 * 113.61451 * 105.47149 * 16 15 2 34 34 H 1.08994 * 113.61477 * 334.56451 * 16 15 2 35 35 H 1.08997 * 113.61028 * 139.98291 * 17 16 15 36 36 H 0.97001 * 119.99349 * 25.00515 * 18 17 16 37 37 H 1.08997 * 109.47565 * 299.99791 * 21 19 18 38 38 H 1.09002 * 109.47005 * 60.00146 * 21 19 18 39 39 H 1.09002 * 109.47356 * 300.00432 * 22 21 19 40 40 H 1.09005 * 109.46560 * 59.99790 * 22 21 19 41 41 H 1.08996 * 109.46903 * 300.00494 * 23 22 21 42 42 H 1.09002 * 109.46819 * 60.00596 * 23 22 21 43 43 H 1.09006 * 113.61307 * 25.43652 * 25 15 2 44 44 H 1.09007 * 113.61642 * 254.53409 * 25 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5617 3.8480 -0.0003 7 6 1.4416 5.2082 0.0013 8 1 0.3763 5.0305 0.0020 9 6 1.9284 6.5080 0.0006 10 7 1.0917 7.5242 0.0013 11 14 3.7709 6.8153 -0.0014 12 1 4.2577 6.8967 -1.4019 13 1 4.0605 8.0928 0.6983 14 1 4.4594 5.7010 0.6981 15 6 2.1974 -1.2687 -0.0006 16 6 1.8952 -2.1540 -1.2212 17 6 1.9128 -3.3525 -0.2576 18 7 3.2396 -3.9504 -0.0889 19 6 3.3548 -5.2411 0.2814 20 8 2.3603 -5.9076 0.4752 21 6 4.7197 -5.8559 0.4555 22 6 4.5699 -7.3193 0.8764 23 6 5.9555 -7.9437 1.0526 24 9 5.8185 -9.2819 1.4369 25 6 1.5374 -2.3615 0.8567 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 0.7585 2.5302 -0.8891 30 1 0.7591 2.5299 0.8908 31 1 1.4319 8.4326 0.0012 32 1 3.2624 -1.1439 0.1953 33 1 2.6996 -2.1732 -1.9566 34 1 0.9181 -1.9657 -1.6659 35 1 1.1381 -4.0906 -0.4648 36 1 4.0350 -3.4172 -0.2435 37 1 5.2652 -5.8025 -0.4866 38 1 5.2680 -5.3115 1.2243 39 1 4.0245 -7.3724 1.8187 40 1 4.0213 -7.8639 0.1079 41 1 6.5005 -7.8906 0.1102 42 1 6.5044 -7.3991 1.8209 43 1 0.4623 -2.2299 0.9800 44 1 2.0527 -2.5482 1.7989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339135902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:37 Heat of formation + Delta-G solvation = -136.365086 kcal Electronic energy + Delta-G solvation = -25220.703888 eV Core-core repulsion = 21213.057956 eV Total energy + Delta-G solvation = -4007.645932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.54710 -41.72461 -40.62635 -39.14976 -36.02204 -34.96814 -34.67311 -33.82734 -30.85186 -28.44937 -27.98107 -27.85889 -26.74953 -25.22138 -23.19720 -21.50381 -21.31794 -19.97110 -19.60067 -18.55722 -18.01286 -17.44008 -17.30207 -17.11348 -16.99508 -16.84534 -16.47270 -16.21573 -15.88834 -15.70730 -15.19425 -14.96198 -14.72620 -14.65237 -14.31034 -14.21273 -13.75672 -13.41408 -13.37146 -13.32875 -13.16315 -13.10343 -13.00561 -12.80822 -12.56983 -12.40054 -11.99773 -11.89854 -11.87180 -11.53905 -11.49091 -11.17103 -10.95806 -10.89321 -10.52904 -10.10064 -9.65829 -9.00056 -8.51548 -6.22576 0.98482 1.31407 1.46127 1.50372 1.54881 1.60885 2.08282 2.12611 2.25029 2.68490 2.86775 3.35920 3.54115 3.60610 3.63989 3.75439 3.85342 3.90268 4.01679 4.15051 4.17874 4.26255 4.30651 4.43225 4.43798 4.54439 4.65060 4.67930 4.70541 4.74435 4.82228 4.83562 4.94136 4.97477 5.01519 5.07963 5.27641 5.49338 5.62043 5.70522 6.11133 6.24817 6.52045 6.93602 7.08190 7.23259 8.60759 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.001833 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.238134 B =15273.156232 C =16130.725636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.533 3.467 4 O -0.562 6.562 5 C -0.108 4.108 6 S -0.176 6.176 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.046 3.954 10 N -0.916 5.916 11 Si 0.915 3.085 12 H -0.262 1.262 13 H -0.260 1.260 14 H -0.236 1.236 15 C 0.114 3.886 16 C -0.144 4.144 17 C 0.127 3.873 18 N -0.707 5.707 19 C 0.512 3.488 20 O -0.585 6.585 21 C -0.132 4.132 22 C -0.136 4.136 23 C 0.057 3.943 24 F -0.242 7.242 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.277 0.723 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -28.996 -0.928 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.330 5.330 3 C 0.320 3.680 4 O -0.440 6.440 5 C -0.258 4.258 6 S 0.051 5.949 7 C -0.677 4.677 8 H 0.080 0.920 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.736 3.264 12 H -0.186 1.186 13 H -0.184 1.184 14 H -0.160 1.160 15 C 0.010 3.990 16 C -0.183 4.183 17 C 0.021 3.979 18 N -0.358 5.358 19 C 0.301 3.699 20 O -0.465 6.465 21 C -0.172 4.172 22 C -0.175 4.175 23 C 0.003 3.997 24 F -0.223 7.223 25 C -0.190 4.190 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.297 -29.309 -0.781 29.988 hybrid contribution -0.970 1.069 0.036 1.444 sum 5.327 -28.240 -0.746 28.748 Atomic orbital electron populations 1.22105 0.77256 1.04912 1.03448 1.47785 1.08183 1.04375 1.72644 1.20029 0.87312 0.85346 0.75295 1.90659 1.15223 1.87449 1.50686 1.23305 1.01810 0.93746 1.06977 1.84668 1.13797 0.98908 1.97567 1.22457 0.94378 0.92551 1.58322 0.92017 1.25564 1.02769 0.94754 0.92866 1.70016 1.36798 0.99530 1.49095 0.85864 0.80189 0.80065 0.80235 1.18635 1.18410 1.16036 1.22810 0.97472 0.80847 0.97853 1.23785 1.04698 0.93017 0.96803 1.21566 0.86179 0.94028 0.96144 1.45731 1.08930 1.11732 1.69443 1.21247 0.92426 0.81404 0.74822 1.90712 1.41260 1.62492 1.52033 1.21593 0.93443 0.95455 1.06679 1.21843 0.97330 0.95434 1.02888 1.22239 0.97606 0.76447 1.03441 1.92731 1.97270 1.38829 1.93460 1.23887 1.02886 0.94009 0.98249 0.91142 0.90527 0.87916 0.87011 0.87290 0.91382 0.87880 0.89852 0.86946 0.88009 0.74766 0.85411 0.85786 0.91993 0.91753 0.88282 0.88510 0.87166 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.84 127.77 1.13 2.11 16 2 N -0.60 -13.41 3.08 -819.64 -2.53 -15.94 16 3 C 0.53 17.66 7.69 87.66 0.67 18.33 16 4 O -0.56 -22.80 15.35 -3.05 -0.05 -22.84 16 5 C -0.11 -3.96 4.71 71.23 0.34 -3.62 16 6 S -0.18 -8.73 18.55 -56.49 -1.05 -9.78 16 7 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 8 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 9 C 0.05 2.66 5.50 84.86 0.47 3.13 16 10 N -0.92 -55.23 13.97 21.65 0.30 -54.92 16 11 Si 0.91 44.34 27.74 68.60 1.90 46.25 16 12 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 15 C 0.11 2.04 4.08 45.52 0.19 2.23 16 16 C -0.14 -1.83 7.36 31.12 0.23 -1.60 16 17 C 0.13 1.67 4.32 45.52 0.20 1.87 16 18 N -0.71 -7.98 5.26 -440.04 -2.32 -10.30 16 19 C 0.51 7.33 7.83 87.66 0.69 8.01 16 20 O -0.59 -13.88 15.58 -3.04 -0.05 -13.92 16 21 C -0.13 -0.82 5.70 29.85 0.17 -0.65 16 22 C -0.14 -1.45 4.96 30.59 0.15 -1.30 16 23 C 0.06 0.43 7.55 71.98 0.54 0.97 16 24 F -0.24 -3.91 17.36 44.97 0.78 -3.13 16 25 C -0.15 -2.14 7.30 31.12 0.23 -1.91 16 26 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.08 1.23 6.44 -2.39 -0.02 1.22 16 28 H 0.10 0.94 6.33 -2.39 -0.02 0.93 16 29 H 0.11 3.77 7.40 -2.40 -0.02 3.75 16 30 H 0.11 3.74 8.11 -2.40 -0.02 3.72 16 31 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.10 2.22 7.24 -2.39 -0.02 2.20 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.19 6.92 -2.39 -0.02 1.18 16 35 H 0.10 1.56 7.47 -2.39 -0.02 1.55 16 36 H 0.42 2.91 8.70 -92.71 -0.81 2.10 16 37 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.06 0.91 8.10 -2.38 -0.02 0.89 16 41 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.11 1.31 6.72 -2.38 -0.02 1.29 16 44 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -81.15 378.60 2.85 -78.29 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.17 Total: 8.49 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.68 Total: -2.19 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -4.54 Total: -81.16 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.09 Total: -36.77 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -81.15 2.85 -78.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339135902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.073 kcal (2) G-P(sol) polarization free energy of solvation -81.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds