Wall clock time and date at job start Tue Mar 31 2020 16:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47598 * 2 1 4 4 N 1.40517 * 127.42693 * 265.14674 * 3 2 1 5 5 H 0.97001 * 126.16445 * 359.97066 * 4 3 2 6 6 N 1.28697 * 107.67545 * 180.23046 * 4 3 2 7 7 N 1.28404 * 111.08874 * 359.77418 * 6 4 3 8 8 C 1.35147 * 109.87254 * 0.02562 * 7 6 4 9 9 N 1.32511 * 126.89422 * 179.97438 * 8 7 6 10 10 C 1.34071 * 120.00340 * 0.02562 * 9 8 7 11 11 O 1.21799 * 119.99696 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00326 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00179 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47448 * 180.02562 * 13 12 10 15 15 C 1.38299 * 119.93217 * 269.73027 * 14 13 12 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47303 * 60.00249 * 23 21 19 25 25 H 1.48499 * 109.46956 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47359 * 299.99968 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47591 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46889 * 300.00154 * 1 2 3 31 31 H 1.09006 * 109.46657 * 59.99656 * 1 2 3 32 32 H 1.09005 * 109.46732 * 240.00031 * 2 1 3 33 33 H 1.08998 * 109.47268 * 120.00459 * 2 1 3 34 34 H 0.97000 * 120.00448 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.46848 * 59.99850 * 13 12 10 36 36 H 1.09001 * 109.46885 * 300.00464 * 13 12 10 37 37 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 38 38 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 39 39 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 41 41 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3922 2.1548 -1.1119 5 1 2.3754 1.8701 -2.0390 6 7 2.7659 3.3074 -0.6781 7 7 2.6722 3.3723 0.6008 8 6 2.2077 2.2002 1.0876 9 7 1.9841 1.8994 2.3585 10 6 2.2223 2.8085 3.3146 11 8 2.6439 3.9112 3.0149 12 7 1.9944 2.5027 4.6072 13 6 2.2552 3.4960 5.6520 14 6 1.9218 2.9079 6.9989 15 6 0.6465 3.0464 7.5157 16 6 0.3362 2.5038 8.7471 17 6 1.3097 1.8285 9.4718 18 8 1.0094 1.2995 10.6855 19 6 1.9648 0.5601 11.2841 20 1 2.9443 0.4787 10.8366 21 6 1.6897 -0.0959 12.4743 22 7 0.4966 0.0035 13.0196 23 14 3.0131 -1.1209 13.3034 24 1 4.1759 -0.2572 13.6304 25 1 2.4705 -1.7134 14.5523 26 1 3.4451 -2.2066 12.3869 27 6 2.5909 1.6960 8.9527 28 6 2.8934 2.2361 7.7182 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6583 1.6247 4.8460 35 1 1.6385 4.3776 5.4773 36 1 3.3077 3.7787 5.6299 37 1 -0.1087 3.5761 6.9538 38 1 -0.6610 2.6084 9.1482 39 1 0.3040 -0.4557 13.8520 40 1 3.3501 1.1718 9.5141 41 1 3.8897 2.1337 7.3141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365824936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:28 Heat of formation + Delta-G solvation = 140.291412 kcal Electronic energy + Delta-G solvation = -26568.851752 eV Core-core repulsion = 22489.971307 eV Total energy + Delta-G solvation = -4078.880445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52368 -39.53683 -38.92283 -36.84074 -36.42924 -35.02835 -33.86712 -32.42893 -32.26262 -30.97237 -30.17286 -29.55342 -25.98332 -25.50159 -24.82110 -24.16637 -22.73465 -21.94621 -20.61410 -20.38095 -19.35087 -17.99439 -17.77682 -17.36332 -17.01667 -16.76296 -15.69716 -15.11656 -15.06553 -14.65155 -14.48207 -14.35225 -14.14000 -13.83487 -13.62481 -13.55426 -13.26987 -12.81312 -12.75244 -12.67886 -12.20590 -12.12612 -11.81075 -11.72488 -11.51201 -11.32890 -11.30834 -10.96298 -10.74494 -10.68533 -10.56541 -10.43978 -9.34154 -9.20450 -8.83429 -8.75625 -8.31962 -8.17122 -7.22869 -6.45965 -4.04671 0.06222 0.25929 1.92510 2.18418 2.23820 2.77160 3.13624 3.13974 3.17247 3.53959 3.77540 3.96447 4.01033 4.03986 4.28651 4.44569 4.56267 4.60542 4.74846 5.08202 5.09912 5.22452 5.26783 5.38806 5.52970 5.58441 5.78991 5.82015 5.95587 6.13290 6.22312 6.32875 6.46272 6.70575 6.90468 6.92291 7.05185 7.20862 7.24936 7.39333 7.44175 7.68097 7.81851 7.99074 8.09895 8.99464 9.03213 9.68950 10.71718 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.001956 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.741940 B =14308.421175 C =14786.916520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 N -0.420 5.420 4 N -0.312 5.312 5 H 0.476 0.524 6 N 0.103 4.897 7 N -0.273 5.273 8 C 0.562 3.438 9 N -0.616 5.616 10 C 0.669 3.331 11 O -0.586 6.586 12 N -0.708 5.708 13 C 0.194 3.806 14 C -0.209 4.209 15 C -0.053 4.053 16 C -0.195 4.195 17 C 0.160 3.840 18 O -0.175 6.175 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.237 4.237 28 C -0.050 4.050 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -2.485 -30.280 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.023 3.977 3 N -0.235 5.235 4 N -0.163 5.163 5 H 0.333 0.667 6 N 0.106 4.894 7 N -0.166 5.166 8 C 0.197 3.803 9 N -0.380 5.380 10 C 0.367 3.633 11 O -0.462 6.462 12 N -0.362 5.362 13 C 0.071 3.929 14 C -0.210 4.210 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.106 3.894 18 O -0.078 6.078 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.256 4.256 28 C -0.069 4.069 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.145 0.855 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.815 -1.391 -29.784 29.872 hybrid contribution 0.372 -1.556 -0.031 1.600 sum 2.187 -2.947 -29.815 30.040 Atomic orbital electron populations 1.22277 0.93596 1.03957 1.03697 1.22042 0.95759 0.74182 1.05718 1.49077 1.63340 1.12812 0.98312 1.48512 1.55403 1.06852 1.05513 0.66674 1.78096 1.02398 0.99350 1.09520 1.77399 1.23145 1.19224 0.96861 1.21331 0.87576 0.82468 0.88895 1.68692 1.38729 1.36639 0.93965 1.16745 0.79156 0.84087 0.83319 1.91017 1.48650 1.24094 1.82479 1.45168 1.69042 1.18248 1.03714 1.19858 1.00471 0.89820 0.82715 1.19251 0.95257 1.09383 0.97141 1.20543 0.95159 0.97174 0.94346 1.20207 0.98940 1.06220 0.96112 1.19433 0.92531 0.91617 0.85868 1.83978 1.41127 1.57781 1.24913 1.21298 0.92802 1.27045 1.05699 0.89022 1.25303 0.97676 0.97372 0.96162 1.70031 1.20129 1.40710 1.18731 0.85773 0.79497 0.79514 0.78609 1.19468 1.20283 1.19478 1.21149 0.97530 1.08672 0.98270 1.20655 0.97692 0.94896 0.93646 0.89515 0.90520 0.92277 0.88627 0.86279 0.76319 0.91788 0.91841 0.86935 0.86428 0.91928 0.85478 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 10.24 37.16 0.38 -0.19 16 2 C 0.14 0.44 7.26 -4.04 -0.03 0.41 16 3 N -0.42 -2.83 3.75 -61.90 -0.23 -3.06 16 4 N -0.31 -1.34 8.33 60.35 0.50 -0.84 16 5 H 0.48 -0.56 8.96 -331.77 -2.97 -3.53 16 6 N 0.10 0.91 13.33 60.35 0.80 1.72 16 7 N -0.27 -3.76 10.46 30.06 0.31 -3.44 16 8 C 0.56 7.06 8.57 -320.64 -2.75 4.31 16 9 N -0.62 -9.10 10.54 -17.34 -0.18 -9.28 16 10 C 0.67 11.78 8.48 -87.56 -0.74 11.04 16 11 O -0.59 -12.09 14.93 5.10 0.08 -12.01 16 12 N -0.71 -11.41 5.55 -66.56 -0.37 -11.78 16 13 C 0.19 3.19 5.80 -5.19 -0.03 3.16 16 14 C -0.21 -3.68 5.25 -104.57 -0.55 -4.23 16 15 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 16 C -0.20 -4.13 9.99 -39.40 -0.39 -4.52 16 17 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 18 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 19 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.17 13.67 55.48 0.76 -24.42 16 23 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.24 -5.14 9.17 -39.40 -0.36 -5.50 16 28 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 6.06 8.57 -40.82 -0.35 5.71 16 35 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -38.39 364.69 -10.41 -48.80 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.25 Total: 2.62 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -5.30 Total: -4.25 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 1.60 Total: -51.10 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.39 -10.41 -48.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365824936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.094 kcal (2) G-P(sol) polarization free energy of solvation -38.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds