Wall clock time and date at job start Tue Mar 31 2020 16:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46818 * 2 1 4 4 C 1.50697 * 109.47028 * 120.00052 * 2 1 3 5 5 O 1.21287 * 119.99639 * 119.59333 * 4 2 1 6 6 N 1.34772 * 120.00571 * 299.59595 * 4 2 1 7 7 C 1.46500 * 120.00566 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47207 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47400 * 300.00234 * 8 7 6 10 10 C 1.53003 * 109.47276 * 60.00458 * 8 7 6 11 11 C 1.50707 * 109.46881 * 180.02562 * 8 7 6 12 12 H 1.07993 * 120.00033 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99438 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00701 * 359.97438 * 13 11 8 15 15 Si 1.86808 * 119.99350 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47208 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47260 * 119.99919 * 15 13 11 18 18 H 1.48502 * 109.47013 * 239.99488 * 15 13 11 19 19 N 1.46903 * 109.46977 * 240.00399 * 2 1 3 20 20 C 1.47064 * 110.99625 * 300.78743 * 19 2 1 21 21 S 1.79690 * 111.73801 * 86.19797 * 20 19 2 22 22 C 1.82768 * 102.39494 * 93.59657 * 21 20 19 23 23 C 1.43989 * 113.16567 * 282.33999 * 22 21 20 24 24 S 1.82754 * 113.17528 * 66.54375 * 23 22 21 25 25 C 1.47059 * 110.99805 * 75.81116 * 19 2 1 26 26 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46984 * 299.99617 * 1 2 3 28 28 H 1.09001 * 109.47332 * 59.99525 * 1 2 3 29 29 H 0.97008 * 119.99451 * 0.02562 * 6 4 2 30 30 H 1.08998 * 109.47324 * 300.00434 * 7 6 4 31 31 H 1.09006 * 109.46644 * 60.00386 * 7 6 4 32 32 H 1.08998 * 109.47425 * 59.99915 * 9 8 7 33 33 H 1.08996 * 109.47458 * 180.02562 * 9 8 7 34 34 H 1.09007 * 109.46828 * 300.00016 * 9 8 7 35 35 H 1.08998 * 109.46977 * 59.99753 * 10 8 7 36 36 H 1.08996 * 109.47167 * 180.02562 * 10 8 7 37 37 H 1.08998 * 109.46641 * 299.99529 * 10 8 7 38 38 H 0.96997 * 120.00364 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.03357 * 325.61536 * 20 19 2 40 40 H 1.09010 * 109.02419 * 206.77672 * 20 19 2 41 41 H 1.09001 * 108.74159 * 43.29446 * 22 21 20 42 42 H 1.09007 * 108.74583 * 161.38547 * 22 21 20 43 43 H 1.09003 * 108.74226 * 187.49756 * 23 22 21 44 44 H 1.08999 * 108.74205 * 305.58954 * 23 22 21 45 45 H 1.09000 * 109.02938 * 63.86139 * 25 19 2 46 46 H 1.09002 * 108.97087 * 304.97086 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7235 -1.7008 1.1191 6 7 1.7136 -0.2453 2.4545 7 6 2.2014 -0.9363 3.6507 8 6 1.6993 -0.2095 4.8999 9 6 2.2176 1.2300 4.8954 10 6 0.1693 -0.2007 4.9045 11 6 2.2017 -0.9200 6.1303 12 1 2.8179 -1.8014 6.0312 13 6 1.8747 -0.4446 7.3826 14 7 1.1249 0.6290 7.5033 15 14 2.4969 -1.3258 8.9078 16 1 3.3138 -2.4981 8.5036 17 1 3.3293 -0.3954 9.7120 18 1 1.3416 -1.7844 9.7203 19 7 2.0197 -0.6924 -1.1995 20 6 1.5327 -2.0794 -1.2430 21 16 -0.0901 -2.1914 -2.0063 22 6 0.3208 -2.5453 -3.7516 23 6 0.7539 -1.3806 -4.4790 24 16 2.3517 -0.7176 -3.8897 25 6 1.8781 0.1559 -2.3924 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.1604 0.5466 2.5435 30 1 1.8318 -1.9617 3.6541 31 1 3.2914 -0.9429 3.6472 32 1 1.8546 1.7441 4.0055 33 1 1.8603 1.7476 5.7856 34 1 3.3077 1.2237 4.8922 35 1 -0.1999 -1.2263 4.9077 36 1 -0.1883 0.3174 5.7942 37 1 -0.1936 0.3134 4.0145 38 1 0.8945 0.9631 8.3843 39 1 1.4747 -2.4678 -0.2261 40 1 2.2365 -2.6854 -1.8138 41 1 1.1149 -3.2915 -3.7801 42 1 -0.5610 -2.9571 -4.2426 43 1 0.8504 -1.6417 -5.5329 44 1 -0.0049 -0.6043 -4.3811 45 1 2.5105 1.0364 -2.2795 46 1 0.8390 0.4736 -2.4799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412211172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:51 Heat of formation + Delta-G solvation = -40.032548 kcal Electronic energy + Delta-G solvation = -25310.848449 eV Core-core repulsion = 21873.592986 eV Total energy + Delta-G solvation = -3437.255464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24740 -38.69569 -37.59080 -35.09773 -34.97688 -33.00289 -31.53526 -29.43253 -27.55634 -27.52187 -27.03178 -26.20490 -24.43528 -23.40810 -21.04885 -20.58799 -18.68016 -17.99564 -17.82023 -17.59326 -17.09626 -16.80927 -16.58106 -16.24866 -15.98468 -15.82592 -15.15489 -14.97708 -14.78343 -14.63182 -14.58291 -14.16895 -13.97813 -13.68586 -13.33360 -13.24526 -13.10381 -12.99284 -12.82826 -12.60867 -12.57973 -12.53178 -12.25544 -12.15489 -12.13719 -11.47549 -11.25511 -11.12683 -10.85484 -10.73750 -10.58891 -10.39917 -9.90333 -9.37797 -8.89515 -8.83724 -8.02749 -6.18157 0.53190 0.67308 1.35793 1.40424 1.44967 1.48087 1.54034 1.68463 2.08541 2.45222 2.67957 3.20977 3.69795 3.79422 3.89875 3.99048 4.09210 4.12231 4.17221 4.30098 4.36391 4.43641 4.52179 4.58601 4.67230 4.70045 4.72500 4.74830 4.75781 5.00523 5.06585 5.11683 5.18555 5.20902 5.38074 5.55524 5.61085 5.67663 5.68204 5.81001 6.16401 6.22507 6.44007 6.69425 6.86419 7.33562 7.49715 8.96162 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.030252 B = 0.002567 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.321902 B =10903.587551 C =11001.746574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.136 0.864 4 C 0.507 3.493 5 O -0.573 6.573 6 N -0.707 5.707 7 C 0.151 3.849 8 C 0.053 3.947 9 C -0.121 4.121 10 C -0.120 4.120 11 C -0.528 4.528 12 H 0.042 0.958 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.943 3.057 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.541 5.541 20 C 0.124 3.876 21 S -0.329 6.329 22 C -0.077 4.077 23 C -0.075 4.075 24 S -0.255 6.255 25 C 0.104 3.896 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.408 0.592 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 1.761 -24.622 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 H 0.153 0.847 4 C 0.294 3.706 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.027 3.973 8 C 0.052 3.948 9 C -0.179 4.179 10 C -0.178 4.178 11 C -0.567 4.567 12 H 0.061 0.939 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.770 3.230 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.267 5.267 20 C -0.114 4.114 21 S -0.105 6.105 22 C -0.226 4.226 23 C -0.225 4.225 24 S -0.027 6.027 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.246 0.754 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.944 1.124 -24.563 24.903 hybrid contribution -0.416 -0.377 1.442 1.548 sum -4.360 0.747 -23.121 23.540 Atomic orbital electron populations 1.22389 0.93000 1.02682 1.04399 1.21621 0.95610 0.99251 0.86982 0.84679 1.21047 0.79747 0.84565 0.85288 1.90633 1.39714 1.27962 1.87002 1.46092 1.53010 1.31647 1.05118 1.21221 0.96884 0.94926 0.84277 1.18339 0.93227 0.93014 0.90218 1.21674 0.97895 0.97835 1.00480 1.21662 0.97067 0.98585 1.00449 1.21312 1.31876 1.11816 0.91688 0.93928 1.25424 0.95164 0.95586 1.00884 1.69903 1.37289 1.22997 1.23524 0.85744 0.78138 0.78760 0.80384 1.20120 1.20692 1.20737 1.59506 1.62897 1.01582 1.02747 1.24044 0.91858 0.91175 1.04331 1.87392 1.19179 1.93460 1.10482 1.22186 1.06552 1.00815 0.93043 1.22252 0.95765 1.00304 1.04131 1.87169 1.18435 1.70302 1.26777 1.23768 1.04847 0.96640 0.88045 0.93057 0.90386 0.89225 0.75439 0.94635 0.94503 0.94213 0.91929 0.96365 0.96494 0.91933 0.94298 0.93033 0.87914 0.89141 0.89338 0.84931 0.84285 0.88036 0.85375 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 7.79 71.98 0.56 -2.61 16 2 C 0.08 1.76 2.70 44.17 0.12 1.88 16 3 H 0.14 2.33 8.00 -2.39 -0.02 2.31 16 4 C 0.51 16.21 6.61 87.66 0.58 16.78 16 5 O -0.57 -23.03 14.17 -3.05 -0.04 -23.07 16 6 N -0.71 -23.18 4.85 -463.07 -2.25 -25.42 16 7 C 0.15 6.31 4.50 86.38 0.39 6.70 16 8 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 9 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 10 C -0.12 -5.22 8.08 71.98 0.58 -4.63 16 11 C -0.53 -27.87 8.01 25.60 0.21 -27.67 16 12 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 13 C 0.03 1.53 5.15 84.66 0.44 1.97 16 14 N -0.90 -47.54 9.35 21.45 0.20 -47.34 16 15 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 N -0.54 -12.32 4.09 -908.71 -3.72 -16.03 16 20 C 0.12 3.14 4.45 127.66 0.57 3.70 16 21 S -0.33 -6.62 18.22 -56.49 -1.03 -7.65 16 22 C -0.08 -0.99 5.62 69.28 0.39 -0.60 16 23 C -0.08 -0.80 5.62 69.28 0.39 -0.41 16 24 S -0.25 -4.31 21.32 -56.49 -1.20 -5.51 16 25 C 0.10 1.75 5.19 127.66 0.66 2.41 16 26 H 0.05 1.21 5.54 -4.36 -0.02 1.19 16 27 H 0.08 1.38 7.59 -2.39 -0.02 1.36 16 28 H 0.09 1.37 6.84 -2.39 -0.02 1.35 16 29 H 0.41 11.47 5.61 -92.70 -0.52 10.95 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 33 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 34 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 37 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 38 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 39 H 0.10 3.30 5.38 -2.52 -0.01 3.28 16 40 H 0.09 2.40 7.65 -2.51 -0.02 2.38 16 41 H 0.09 1.24 8.00 -2.39 -0.02 1.22 16 42 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.95 8.00 -2.39 -0.02 0.94 16 45 H 0.13 1.87 8.14 -2.52 -0.02 1.85 16 46 H 0.09 1.21 6.22 -2.51 -0.02 1.19 16 Total: -1.00 -62.16 362.87 -0.14 -62.30 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.44 Total: 22.87 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.43 Total: -4.78 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -5.77 Total: -88.80 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -2.23 Total: -13.16 kcal Total: -62.16 -0.14 -62.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412211172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.263 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds