Wall clock time and date at job start Tue Mar 31 2020 16:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39914 * 125.75942 * 2 1 4 4 C 1.30372 * 109.12736 * 180.02562 * 3 2 1 5 5 C 1.41340 * 108.15887 * 359.73324 * 4 3 2 6 6 C 1.47072 * 126.48381 * 180.27153 * 5 4 3 7 7 O 1.21649 * 120.00251 * 180.17763 * 6 5 4 8 8 N 1.34776 * 119.99792 * 0.18149 * 6 5 4 9 9 C 1.47026 * 125.64831 * 359.68686 * 8 6 5 10 10 C 1.54326 * 107.26533 * 178.85091 * 9 8 6 11 11 C 1.55156 * 103.02142 * 338.14200 * 10 9 8 12 12 O 1.42900 * 111.00601 * 277.22960 * 11 10 9 13 13 C 1.50704 * 111.00566 * 153.37817 * 11 10 9 14 14 H 1.08006 * 119.99944 * 6.35487 * 13 11 10 15 15 C 1.37878 * 120.00303 * 186.34967 * 13 11 10 16 16 N 1.31511 * 119.99939 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00034 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47434 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47219 * 120.00257 * 17 15 13 20 20 H 1.48503 * 109.47265 * 239.99733 * 17 15 13 21 21 C 1.47418 * 125.64746 * 179.97438 * 8 6 5 22 22 C 1.34713 * 125.76156 * 180.02562 * 2 1 3 23 23 N 1.39159 * 126.39835 * 359.97438 * 22 2 1 24 24 C 1.36454 * 127.13051 * 134.70801 * 23 22 2 25 25 N 1.30488 * 107.18341 * 180.25771 * 24 23 22 26 26 N 1.28527 * 109.94660 * 0.02562 * 25 24 23 27 27 C 1.30486 * 109.95492 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47107 * 269.97927 * 1 2 3 29 29 H 1.09000 * 109.46877 * 29.97367 * 1 2 3 30 30 H 1.08990 * 109.47097 * 149.98052 * 1 2 3 31 31 H 1.08006 * 125.92160 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.87969 * 298.39924 * 9 8 6 33 33 H 1.08999 * 109.88155 * 59.56227 * 9 8 6 34 34 H 1.08994 * 110.85358 * 219.67235 * 10 9 8 35 35 H 1.09000 * 110.66766 * 96.52221 * 10 9 8 36 36 H 0.96693 * 114.00052 * 173.64688 * 12 11 10 37 37 H 0.96995 * 120.00144 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.37069 * 322.92498 * 21 8 6 39 39 H 1.08998 * 110.36822 * 85.14315 * 21 8 6 40 40 H 1.08005 * 126.40679 * 0.22336 * 24 23 22 41 41 H 1.08003 * 126.41183 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1354 0.0000 4 6 3.5318 0.7622 -0.0006 5 6 3.5694 -0.6507 0.0053 6 6 4.7748 -1.4933 0.0124 7 8 4.6698 -2.7053 0.0138 8 7 5.9958 -0.9227 0.0175 9 6 6.2664 0.5224 0.0102 10 6 7.7987 0.7017 0.0495 11 6 8.2933 -0.6454 0.6395 12 8 8.2077 -0.6421 2.0659 13 6 9.6974 -0.9509 0.1855 14 1 10.2533 -0.2182 -0.3808 15 6 10.2726 -2.1656 0.4931 16 7 9.5956 -3.0579 1.1824 17 14 12.0133 -2.5439 -0.0690 18 1 12.5538 -1.3834 -0.8214 19 1 12.8696 -2.8077 1.1153 20 1 12.0006 -3.7414 -0.9472 21 6 7.2813 -1.6443 0.0254 22 6 2.2523 -1.0931 -0.0005 23 7 1.8259 -2.4178 -0.0006 24 6 2.3018 -3.4362 -0.7741 25 7 1.6243 -4.5067 -0.4616 26 7 0.7612 -4.2290 0.4493 27 6 0.8411 -2.9663 0.7684 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5141 31 1 4.3893 1.4189 -0.0003 32 1 5.8619 0.9706 -0.8974 33 1 5.8179 0.9880 0.8877 34 1 8.0756 1.5320 0.6991 35 1 8.1945 0.8512 -0.9550 36 1 8.4133 -1.4941 2.4743 37 1 10.0000 -3.9126 1.3985 38 1 7.2100 -2.5398 0.6427 39 1 7.5749 -1.9074 -0.9908 40 1 3.0912 -3.3687 -1.5081 41 1 0.2398 -2.4514 1.5031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413180714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:47 Heat of formation + Delta-G solvation = 106.589745 kcal Electronic energy + Delta-G solvation = -29070.916804 eV Core-core repulsion = 24990.574945 eV Total energy + Delta-G solvation = -4080.341859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42664 -41.66718 -39.28274 -37.24210 -35.35992 -34.37054 -33.67462 -32.28195 -30.75629 -30.50156 -29.69393 -28.47595 -27.24244 -25.24364 -24.14692 -23.46190 -22.62382 -21.33365 -21.20145 -19.90727 -19.60262 -17.93825 -17.30126 -16.91798 -16.66753 -15.98541 -15.61590 -15.45368 -15.13307 -14.98557 -14.87113 -14.62592 -14.25790 -14.13600 -13.51766 -13.28812 -13.14631 -12.93554 -12.85015 -12.19870 -11.86185 -11.68121 -11.65913 -11.48890 -11.23861 -11.08687 -10.87298 -10.68563 -10.62267 -10.50187 -10.26022 -9.78102 -9.76313 -9.45753 -9.38023 -8.99172 -8.74898 -8.44303 -7.90709 -6.32316 -4.42438 0.63361 1.36815 1.75710 1.90322 2.38666 2.77506 3.17161 3.26890 3.29439 3.38386 3.53199 3.99576 4.18694 4.23453 4.45446 4.53887 4.57039 4.72497 4.82705 4.88697 4.94318 5.06697 5.11187 5.24998 5.48356 5.50962 5.65085 5.82652 5.87032 5.91894 6.02018 6.11688 6.39723 6.63299 6.74554 6.76158 6.86193 7.03418 7.17252 7.28576 7.69438 7.95593 8.06421 8.50802 8.55264 8.62474 9.24003 9.32841 10.74724 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003529 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.846507 B = 7933.170733 C = 9127.776779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.360 5.360 3 N -0.268 5.268 4 C 0.084 3.916 5 C -0.250 4.250 6 C 0.593 3.407 7 O -0.552 6.552 8 N -0.596 5.596 9 C 0.094 3.906 10 C -0.119 4.119 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.539 4.539 14 H 0.068 0.932 15 C 0.072 3.928 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.097 3.903 22 C 0.338 3.662 23 N -0.422 5.422 24 C 0.239 3.761 25 N -0.300 5.300 26 N -0.280 5.280 27 C 0.146 3.854 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.214 0.786 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.382 0.618 37 H 0.270 0.730 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.226 0.774 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 9.078 -3.245 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.142 5.142 3 N -0.088 5.088 4 C -0.102 4.102 5 C -0.267 4.267 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.327 5.327 9 C -0.029 4.029 10 C -0.156 4.156 11 C 0.208 3.792 12 O -0.391 6.391 13 C -0.577 4.577 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.530 5.530 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.024 4.024 22 C 0.114 3.886 23 N -0.115 5.115 24 C -0.047 4.047 25 N -0.136 5.136 26 N -0.117 5.117 27 C -0.141 4.141 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.242 0.758 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.690 8.325 -3.274 19.824 hybrid contribution 2.028 -0.087 -0.024 2.030 sum -15.662 8.239 -3.298 18.002 Atomic orbital electron populations 1.22140 0.73120 1.05522 1.04398 1.48641 1.07323 1.02246 1.56009 1.77361 1.02094 1.04543 1.24813 1.24831 0.95607 0.93793 0.95999 1.20154 0.91529 0.94369 1.20663 1.16597 0.81261 0.86485 0.77585 1.90794 1.86028 1.13526 1.52857 1.48501 1.06027 1.08024 1.70156 1.22359 0.98784 0.82073 0.99699 1.22649 0.91478 0.99981 1.01530 1.19629 0.92009 0.88272 0.79312 1.86103 1.92860 1.39248 1.20908 1.21481 0.98712 1.01291 1.36239 0.91419 1.25075 0.98424 0.95720 0.93944 1.69713 1.37443 1.07516 1.38307 0.86362 0.83652 0.78398 0.78576 1.19571 1.20756 1.20743 1.23332 0.79428 0.98051 1.01553 1.17566 0.89734 0.79067 1.02265 1.43348 1.30267 1.05900 1.31962 1.27031 0.99283 0.81567 0.96831 1.74308 1.06012 1.21871 1.11367 1.74177 1.17118 1.10343 1.10018 1.26787 0.94443 0.92694 1.00137 0.89568 0.87766 0.89319 0.77021 0.92032 0.91632 0.90476 0.90160 0.76840 0.91977 0.89317 0.91814 0.75823 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.71 59.85 0.64 1.14 16 2 N -0.36 -3.72 3.99 -66.63 -0.27 -3.98 16 3 N -0.27 -3.08 12.48 30.86 0.39 -2.70 16 4 C 0.08 1.01 10.44 -16.99 -0.18 0.83 16 5 C -0.25 -3.65 6.10 -104.87 -0.64 -4.29 16 6 C 0.59 10.90 7.82 -12.68 -0.10 10.80 16 7 O -0.55 -11.71 13.72 5.23 0.07 -11.64 16 8 N -0.60 -11.13 3.33 -171.93 -0.57 -11.70 16 9 C 0.09 1.42 4.98 -3.06 -0.02 1.40 16 10 C -0.12 -2.10 6.13 -24.90 -0.15 -2.25 16 11 C 0.25 5.61 0.87 -89.63 -0.08 5.53 16 12 O -0.58 -14.07 13.16 -35.23 -0.46 -14.53 16 13 C -0.54 -13.34 8.27 -34.44 -0.28 -13.63 16 14 H 0.07 1.65 7.79 -52.48 -0.41 1.24 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 16 N -0.89 -23.13 10.69 55.43 0.59 -22.53 16 17 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.10 2.17 5.38 -2.54 -0.01 2.16 16 22 C 0.34 4.35 7.20 -152.92 -1.10 3.25 16 23 N -0.42 -5.62 2.76 -64.49 -0.18 -5.80 16 24 C 0.24 3.63 10.36 -89.08 -0.92 2.70 16 25 N -0.30 -5.03 12.19 29.87 0.36 -4.67 16 26 N -0.28 -4.31 12.19 29.87 0.36 -3.95 16 27 C 0.15 1.74 11.44 -89.08 -1.02 0.72 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.44 7.51 -51.93 -0.39 0.05 16 31 H 0.21 2.10 4.47 -52.48 -0.23 1.87 16 32 H 0.06 0.73 7.01 -51.93 -0.36 0.37 16 33 H 0.07 0.90 6.82 -51.93 -0.35 0.55 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 36 H 0.38 9.61 7.57 45.56 0.34 9.95 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 39 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 40 H 0.23 3.22 7.22 -52.48 -0.38 2.84 16 41 H 0.22 1.57 8.03 -52.48 -0.42 1.15 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -32.11 342.90 -7.34 -39.45 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -3.82 Total: 12.03 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -3.96 Total: 10.08 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.69 Total: -55.33 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.39 Total: -26.17 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.11 -7.34 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413180714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.039 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds