Wall clock time and date at job start Tue Mar 31 2020 16:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39914 * 125.75942 * 2 1 4 4 C 1.30372 * 109.12736 * 180.02562 * 3 2 1 5 5 C 1.41340 * 108.15887 * 359.73324 * 4 3 2 6 6 C 1.47072 * 126.48381 * 180.27153 * 5 4 3 7 7 O 1.21649 * 120.00251 * 180.17763 * 6 5 4 8 8 N 1.34776 * 119.99792 * 0.18149 * 6 5 4 9 9 C 1.47026 * 125.64831 * 359.68686 * 8 6 5 10 10 C 1.54326 * 107.26533 * 178.85091 * 9 8 6 11 11 C 1.55156 * 103.02142 * 338.14200 * 10 9 8 12 12 O 1.42900 * 111.00601 * 277.22960 * 11 10 9 13 13 C 1.50704 * 111.00566 * 153.37817 * 11 10 9 14 14 H 1.08006 * 119.99944 * 6.35487 * 13 11 10 15 15 C 1.37878 * 120.00303 * 186.34967 * 13 11 10 16 16 N 1.31511 * 119.99939 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00034 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47434 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47219 * 120.00257 * 17 15 13 20 20 H 1.48503 * 109.47265 * 239.99733 * 17 15 13 21 21 C 1.47418 * 125.64746 * 179.97438 * 8 6 5 22 22 C 1.34713 * 125.76156 * 180.02562 * 2 1 3 23 23 N 1.39159 * 126.39835 * 359.97438 * 22 2 1 24 24 C 1.36454 * 127.13051 * 134.70801 * 23 22 2 25 25 N 1.30488 * 107.18341 * 180.25771 * 24 23 22 26 26 N 1.28527 * 109.94660 * 0.02562 * 25 24 23 27 27 C 1.30486 * 109.95492 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47107 * 269.97927 * 1 2 3 29 29 H 1.09000 * 109.46877 * 29.97367 * 1 2 3 30 30 H 1.08990 * 109.47097 * 149.98052 * 1 2 3 31 31 H 1.08006 * 125.92160 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.87969 * 298.39924 * 9 8 6 33 33 H 1.08999 * 109.88155 * 59.56227 * 9 8 6 34 34 H 1.08994 * 110.85358 * 219.67235 * 10 9 8 35 35 H 1.09000 * 110.66766 * 96.52221 * 10 9 8 36 36 H 0.96693 * 114.00052 * 173.64688 * 12 11 10 37 37 H 0.96995 * 120.00144 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.37069 * 322.92498 * 21 8 6 39 39 H 1.08998 * 110.36822 * 85.14315 * 21 8 6 40 40 H 1.08005 * 126.40679 * 0.22336 * 24 23 22 41 41 H 1.08003 * 126.41183 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1354 0.0000 4 6 3.5318 0.7622 -0.0006 5 6 3.5694 -0.6507 0.0053 6 6 4.7748 -1.4933 0.0124 7 8 4.6698 -2.7053 0.0138 8 7 5.9958 -0.9227 0.0175 9 6 6.2664 0.5224 0.0102 10 6 7.7987 0.7017 0.0495 11 6 8.2933 -0.6454 0.6395 12 8 8.2077 -0.6421 2.0659 13 6 9.6974 -0.9509 0.1855 14 1 10.2533 -0.2182 -0.3808 15 6 10.2726 -2.1656 0.4931 16 7 9.5956 -3.0579 1.1824 17 14 12.0133 -2.5439 -0.0690 18 1 12.5538 -1.3834 -0.8214 19 1 12.8696 -2.8077 1.1153 20 1 12.0006 -3.7414 -0.9472 21 6 7.2813 -1.6443 0.0254 22 6 2.2523 -1.0931 -0.0005 23 7 1.8259 -2.4178 -0.0006 24 6 2.3018 -3.4362 -0.7741 25 7 1.6243 -4.5067 -0.4616 26 7 0.7612 -4.2290 0.4493 27 6 0.8411 -2.9663 0.7684 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5141 31 1 4.3893 1.4189 -0.0003 32 1 5.8619 0.9706 -0.8974 33 1 5.8179 0.9880 0.8877 34 1 8.0756 1.5320 0.6991 35 1 8.1945 0.8512 -0.9550 36 1 8.4133 -1.4941 2.4743 37 1 10.0000 -3.9126 1.3985 38 1 7.2100 -2.5398 0.6427 39 1 7.5749 -1.9074 -0.9908 40 1 3.0912 -3.3687 -1.5081 41 1 0.2398 -2.4514 1.5031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413180714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:47 Heat of formation + Delta-G solvation = 84.722749 kcal Electronic energy + Delta-G solvation = -29071.865028 eV Core-core repulsion = 24990.574945 eV Total energy + Delta-G solvation = -4081.290083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.49247 -42.64319 -40.72994 -38.81500 -36.49956 -35.91142 -34.53511 -34.21258 -31.98520 -31.81797 -30.81454 -29.81915 -28.36558 -26.80950 -25.34100 -24.66385 -23.76371 -22.49700 -22.19466 -21.42011 -20.91060 -19.09783 -18.98983 -18.20502 -17.67629 -17.18538 -16.87726 -16.77967 -16.48181 -16.31142 -16.20565 -15.89495 -15.49139 -15.18245 -14.80154 -14.69214 -14.54728 -13.91025 -13.76079 -13.54473 -13.46105 -13.13833 -12.98683 -12.86150 -12.74452 -12.41762 -12.34695 -12.20755 -12.13482 -12.05260 -11.70544 -11.17829 -11.09374 -10.66114 -10.63055 -10.58161 -10.27460 -10.04798 -9.41724 -8.23306 -6.39918 -0.38395 0.45573 0.75590 0.89716 1.41404 1.45766 1.52038 1.55645 1.65521 2.05106 2.22984 2.39972 3.03730 3.13821 3.34149 3.46392 3.54098 3.66150 3.80894 4.02933 4.06991 4.12220 4.18728 4.23907 4.28946 4.38641 4.47519 4.54583 4.67421 4.78440 4.86032 4.96695 5.09798 5.13183 5.16162 5.33223 5.44436 5.51465 5.78321 5.78533 6.09792 6.12921 6.62772 6.71480 7.14218 7.29336 7.37072 7.41189 8.81576 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003529 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.846507 B = 7933.170733 C = 9127.776779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.341 5.341 3 N -0.265 5.265 4 C 0.093 3.907 5 C -0.276 4.276 6 C 0.588 3.412 7 O -0.593 6.593 8 N -0.602 5.602 9 C 0.095 3.905 10 C -0.113 4.113 11 C 0.230 3.770 12 O -0.587 6.587 13 C -0.553 4.553 14 H 0.070 0.930 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.960 3.040 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.285 1.285 21 C 0.114 3.886 22 C 0.340 3.660 23 N -0.423 5.423 24 C 0.231 3.769 25 N -0.332 5.332 26 N -0.318 5.318 27 C 0.172 3.828 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.372 0.628 37 H 0.267 0.733 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.221 0.779 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.777 12.120 -3.394 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.123 5.123 3 N -0.086 5.086 4 C -0.093 4.093 5 C -0.293 4.293 6 C 0.379 3.621 7 O -0.476 6.476 8 N -0.333 5.333 9 C -0.027 4.027 10 C -0.151 4.151 11 C 0.189 3.811 12 O -0.394 6.394 13 C -0.591 4.591 14 H 0.088 0.912 15 C -0.174 4.174 16 N -0.555 5.555 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.009 4.009 22 C 0.114 3.886 23 N -0.115 5.115 24 C -0.057 4.057 25 N -0.167 5.167 26 N -0.153 5.153 27 C -0.115 4.115 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.249 0.751 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.220 0.780 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.238 0.762 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.537 11.429 -3.433 22.893 hybrid contribution 2.479 -0.996 0.046 2.672 sum -17.058 10.434 -3.387 20.280 Atomic orbital electron populations 1.22658 0.70110 1.06956 1.06716 1.49012 1.08760 1.00923 1.53603 1.77373 1.01898 1.04699 1.24582 1.25008 0.96447 0.92508 0.95299 1.19818 0.90508 0.95217 1.23787 1.17136 0.82077 0.86470 0.76464 1.90770 1.86690 1.15551 1.54542 1.48479 1.04999 1.09264 1.70512 1.22602 0.97206 0.80084 1.02799 1.22658 0.93215 0.97327 1.01875 1.19894 0.91340 0.91331 0.78491 1.86095 1.92821 1.38511 1.21996 1.21855 1.00012 1.01287 1.35958 0.91173 1.25788 1.01609 0.95798 0.94182 1.69844 1.38630 1.07654 1.39403 0.85475 0.79842 0.78158 0.77960 1.18563 1.20893 1.21073 1.22776 0.81821 0.96889 0.99381 1.17492 0.89841 0.79296 1.01996 1.43356 1.30338 1.05989 1.31836 1.26953 0.99355 0.82021 0.97359 1.74235 1.07014 1.22974 1.12496 1.74097 1.17956 1.12357 1.10845 1.27663 0.93065 0.91769 0.98989 0.86713 0.85859 0.88490 0.75116 0.87749 0.89622 0.89279 0.88995 0.78014 0.92358 0.93778 0.93611 0.76224 0.71793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.71 127.77 1.37 1.86 16 2 N -0.34 -5.76 3.99 -364.73 -1.46 -7.22 16 3 N -0.26 -5.04 12.48 -56.28 -0.70 -5.74 16 4 C 0.09 1.92 10.44 85.67 0.89 2.81 16 5 C -0.28 -7.58 6.10 -20.03 -0.12 -7.70 16 6 C 0.59 21.73 7.82 86.56 0.68 22.41 16 7 O -0.59 -26.24 13.72 -4.19 -0.06 -26.30 16 8 N -0.60 -22.41 3.33 -816.10 -2.71 -25.12 16 9 C 0.09 2.62 4.98 86.73 0.43 3.05 16 10 C -0.11 -3.80 6.13 31.78 0.19 -3.60 16 11 C 0.23 10.47 0.87 -10.15 -0.01 10.46 16 12 O -0.59 -28.86 13.16 -148.98 -1.96 -30.82 16 13 C -0.55 -27.66 8.27 25.60 0.21 -27.44 16 14 H 0.07 3.39 7.79 -2.91 -0.02 3.36 16 15 C 0.03 1.39 5.29 84.66 0.45 1.84 16 16 N -0.92 -49.50 10.69 21.45 0.23 -49.27 16 17 Si 0.96 41.17 29.54 68.60 2.03 43.20 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.11 5.30 5.38 86.85 0.47 5.77 16 22 C 0.34 8.00 7.20 132.26 0.95 8.95 16 23 N -0.42 -10.72 2.76 -357.93 -0.99 -11.71 16 24 C 0.23 7.15 10.36 179.81 1.86 9.01 16 25 N -0.33 -11.40 12.19 -59.41 -0.72 -12.13 16 26 N -0.32 -9.61 12.19 -59.41 -0.72 -10.33 16 27 C 0.17 3.73 11.44 179.81 2.06 5.79 16 28 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.55 7.51 -2.39 -0.02 0.53 16 31 H 0.23 3.58 4.47 -2.91 -0.01 3.57 16 32 H 0.10 2.04 7.01 -2.39 -0.02 2.02 16 33 H 0.09 2.06 6.82 -2.39 -0.02 2.04 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.09 2.85 8.03 -2.39 -0.02 2.83 16 36 H 0.37 19.55 7.57 -74.06 -0.56 18.99 16 37 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.04 2.42 7.33 -2.39 -0.02 2.40 16 39 H 0.05 2.22 8.03 -2.39 -0.02 2.20 16 40 H 0.22 6.76 7.22 -2.91 -0.02 6.74 16 41 H 0.27 2.66 8.03 -2.91 -0.02 2.64 16 Total: -1.00 -74.22 342.90 2.91 -71.31 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.54 Total: 30.93 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: 9.44 Total: 33.20 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -7.08 Total: -121.52 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -2.02 Total: -57.12 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -74.22 2.91 -71.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413180714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.032 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds