Wall clock time and date at job start Tue Mar 31 2020 16:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42908 * 113.99800 * 2 1 4 4 C 1.50700 * 109.46769 * 180.02562 * 3 2 1 5 5 N 1.30712 * 125.52526 * 269.95623 * 4 3 2 6 6 N 1.40447 * 106.78985 * 179.79225 * 5 4 3 7 7 H 0.97001 * 126.81980 * 180.25844 * 6 5 4 8 8 C 1.34425 * 106.35666 * 0.40021 * 6 5 4 9 9 C 1.50702 * 125.96410 * 179.86321 * 8 6 5 10 10 N 1.46500 * 109.47105 * 94.71668 * 9 8 6 11 11 C 1.34776 * 119.99935 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99727 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.39467 * 119.99900 * 185.06073 * 13 11 10 15 15 C 1.38638 * 119.64774 * 185.36133 * 14 13 11 16 16 C 1.40826 * 118.67723 * 179.74795 * 15 14 13 17 17 C 1.41538 * 120.99778 * 180.23134 * 16 15 14 18 18 H 1.07999 * 119.99845 * 153.81888 * 17 16 15 19 19 C 1.40030 * 120.00314 * 333.81295 * 17 16 15 20 20 N 1.30746 * 119.99649 * 350.11466 * 19 17 16 21 21 Si 1.86801 * 120.00112 * 170.11842 * 19 17 16 22 22 H 1.48497 * 109.47179 * 90.00317 * 21 19 17 23 23 H 1.48500 * 109.46733 * 210.00043 * 21 19 17 24 24 H 1.48494 * 109.47000 * 329.99994 * 21 19 17 25 25 C 1.41165 * 118.00055 * 0.24366 * 16 15 14 26 26 C 1.36593 * 119.12717 * 0.02562 * 25 16 15 27 27 N 1.32066 * 121.26178 * 0.02562 * 26 25 16 28 28 N 1.30838 * 108.07417 * 359.59762 * 8 6 5 29 29 H 1.08998 * 109.46577 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46616 * 300.00045 * 1 2 3 31 31 H 1.09000 * 109.47146 * 60.00198 * 1 2 3 32 32 H 1.08999 * 109.47066 * 59.99888 * 3 2 1 33 33 H 1.09007 * 109.46683 * 299.99675 * 3 2 1 34 34 H 1.08993 * 109.46686 * 334.71576 * 9 8 6 35 35 H 1.08999 * 109.46756 * 214.71279 * 9 8 6 36 36 H 0.97001 * 120.00282 * 359.97438 * 10 9 8 37 37 H 0.96995 * 120.00617 * 5.05932 * 13 11 10 38 38 H 1.08006 * 120.66544 * 0.02562 * 15 14 13 39 39 H 0.97000 * 119.99682 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.43150 * 179.97438 * 25 16 15 41 41 H 1.07997 * 119.36607 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2702 1.1271 1.0629 6 7 5.5955 1.0170 0.6112 7 1 6.3928 0.9494 1.1595 8 6 5.5398 1.0269 -0.7319 9 6 6.7177 0.9340 -1.6673 10 7 6.9166 -0.4619 -2.0649 11 6 7.9200 -0.7872 -2.9038 12 8 8.6599 0.0780 -3.3309 13 7 8.1033 -2.0714 -3.2692 14 6 9.2029 -2.4237 -4.0514 15 6 9.3254 -3.7240 -4.5164 16 6 10.4411 -4.0560 -5.3090 17 6 10.6125 -5.3673 -5.8135 18 1 11.1820 -5.5280 -6.7170 19 6 10.0438 -6.4561 -5.1414 20 7 9.5228 -6.2914 -3.9536 21 14 10.0296 -8.1440 -5.9416 22 1 11.2656 -8.8784 -5.5699 23 1 8.8427 -8.9037 -5.4735 24 1 9.9693 -7.9915 -7.4175 25 6 11.3835 -3.0418 -5.5848 26 6 11.1805 -1.7899 -5.0777 27 7 10.1227 -1.5138 -4.3368 28 7 4.2839 1.1256 -1.0853 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8901 34 1 7.6121 1.2990 -1.1624 35 1 6.5272 1.5404 -2.5527 36 1 6.3266 -1.1522 -1.7238 37 1 7.4706 -2.7507 -2.9882 38 1 8.5778 -4.4665 -4.2793 39 1 9.1285 -7.0455 -3.4881 40 1 12.2538 -3.2533 -6.1882 41 1 11.8992 -1.0112 -5.2860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414483753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:22 Heat of formation + Delta-G solvation = 62.339172 kcal Electronic energy + Delta-G solvation = -26558.603418 eV Core-core repulsion = 22476.342711 eV Total energy + Delta-G solvation = -4082.260708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59652 -39.85201 -38.23894 -38.06623 -35.15142 -34.23129 -33.75907 -33.18972 -31.91450 -30.50400 -29.06864 -28.41050 -26.80909 -26.07538 -25.98088 -22.26819 -21.90751 -21.55422 -20.94706 -20.18841 -18.68437 -17.94150 -17.69765 -17.03338 -16.43085 -16.00032 -15.84393 -15.67865 -15.32387 -15.20696 -14.69426 -14.45955 -14.18816 -13.87134 -13.58814 -13.35655 -12.97710 -12.86930 -12.70461 -12.60152 -12.43446 -12.13671 -11.88869 -11.45369 -11.17749 -10.91127 -10.54507 -10.46795 -10.32407 -10.16532 -10.14211 -10.11778 -9.79694 -9.64046 -9.39897 -9.04525 -7.98179 -7.74847 -7.04850 -6.75433 -4.63153 1.02685 2.13178 2.16505 2.67417 2.80244 3.01466 3.05896 3.06785 3.23446 3.29997 3.75692 3.83761 3.85465 4.19312 4.35503 4.50346 4.70346 4.79616 4.88977 4.97730 5.02327 5.28591 5.31289 5.39948 5.68598 5.77047 5.91061 5.91849 6.37756 6.51584 6.58716 6.60293 6.64961 6.79036 6.93738 7.12697 7.18953 7.40599 7.47505 7.65755 7.86138 8.07729 8.30381 8.44902 8.71927 8.75621 9.06811 9.69996 10.08957 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002241 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.915568 B =12491.359249 C =14046.856930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.158 3.842 4 C 0.225 3.775 5 N -0.289 5.289 6 N -0.466 5.466 7 H 0.446 0.554 8 C 0.276 3.724 9 C 0.224 3.776 10 N -0.751 5.751 11 C 0.698 3.302 12 O -0.530 6.530 13 N -0.664 5.664 14 C 0.353 3.647 15 C -0.241 4.241 16 C 0.142 3.858 17 C -0.453 4.453 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.282 4.282 26 C 0.119 3.881 27 N -0.553 5.553 28 N -0.509 5.509 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.396 0.604 37 H 0.406 0.594 38 H 0.133 0.867 39 H 0.281 0.719 40 H 0.102 0.898 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 9.859 9.776 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.079 3.921 4 C -0.058 4.058 5 N -0.120 5.120 6 N -0.186 5.186 7 H 0.292 0.708 8 C -0.004 4.004 9 C 0.096 3.904 10 N -0.412 5.412 11 C 0.397 3.603 12 O -0.401 6.401 13 N -0.312 5.312 14 C 0.127 3.873 15 C -0.267 4.267 16 C 0.134 3.866 17 C -0.484 4.484 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.421 5.421 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.305 4.305 26 C -0.035 4.035 27 N -0.272 5.272 28 N -0.238 5.238 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.240 0.760 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.233 11.326 10.291 20.899 hybrid contribution -0.047 -2.262 0.148 2.267 sum -14.280 9.064 10.439 19.876 Atomic orbital electron populations 1.22798 0.79868 1.03351 1.00303 1.87953 1.20373 1.26312 1.95518 1.20415 0.83131 0.86002 1.02511 1.23761 0.97025 0.99279 0.85755 1.78011 0.87149 1.24603 1.22250 1.48083 1.08349 1.55656 1.06464 0.70770 1.24363 0.95004 0.97053 0.83951 1.19392 0.90330 0.84673 0.95955 1.45043 1.35304 1.08117 1.52712 1.15922 0.80984 0.83723 0.79628 1.91030 1.45670 1.46951 1.56462 1.42503 1.27203 1.07623 1.53867 1.17945 0.86895 0.90217 0.92253 1.21625 1.02429 0.93524 1.09115 1.17585 0.88366 0.92572 0.88081 1.19577 1.29036 0.90296 1.09520 0.90043 1.25952 0.92656 1.01663 0.94042 1.69743 1.28383 1.33346 1.10648 0.86209 0.78619 0.80666 0.80647 1.19415 1.20078 1.18420 1.21690 1.02080 0.95669 1.11107 1.21462 0.93560 0.94663 0.93790 1.67152 1.04318 1.34686 1.21063 1.70395 0.99816 1.22855 1.30745 0.89141 0.93730 0.93504 0.90595 0.89978 0.88965 0.87554 0.77044 0.75960 0.84951 0.90837 0.87998 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.99 10.69 -35.23 -0.38 -4.37 16 3 C 0.16 1.43 6.56 36.01 0.24 1.66 16 4 C 0.22 2.66 7.77 -156.86 -1.22 1.44 16 5 N -0.29 -3.37 12.80 32.42 0.41 -2.95 16 6 N -0.47 -4.42 7.45 32.62 0.24 -4.17 16 7 H 0.45 2.82 8.96 -182.33 -1.63 1.19 16 8 C 0.28 2.96 7.61 -155.69 -1.18 1.78 16 9 C 0.22 2.45 6.30 -5.19 -0.03 2.41 16 10 N -0.75 -9.80 5.55 -66.42 -0.37 -10.17 16 11 C 0.70 12.82 8.51 -86.92 -0.74 12.08 16 12 O -0.53 -11.86 14.64 5.29 0.08 -11.78 16 13 N -0.66 -12.82 5.40 -15.86 -0.09 -12.91 16 14 C 0.35 8.46 7.41 -154.67 -1.15 7.32 16 15 C -0.24 -6.06 8.62 -38.46 -0.33 -6.39 16 16 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 17 C -0.45 -11.54 9.14 -37.65 -0.34 -11.89 16 18 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 20 N -0.79 -19.39 10.70 55.55 0.59 -18.80 16 21 Si 0.91 17.88 29.57 -169.99 -5.03 12.86 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 C -0.28 -6.84 9.85 -39.07 -0.38 -7.23 16 26 C 0.12 2.83 11.10 -18.05 -0.20 2.63 16 27 N -0.55 -13.97 7.90 -12.76 -0.10 -14.07 16 28 N -0.51 -6.42 11.19 -8.16 -0.09 -6.51 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.49 8.48 -40.82 -0.35 4.14 16 37 H 0.41 6.51 8.71 -40.82 -0.36 6.15 16 38 H 0.13 3.31 6.11 -52.48 -0.32 2.99 16 39 H 0.28 6.21 8.29 -40.82 -0.34 5.88 16 40 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -34.52 363.51 -10.17 -44.70 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.01 Total: 12.74 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -4.92 Total: 9.95 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: 0.61 Total: -69.57 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.30 Total: -16.15 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.52 -10.17 -44.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414483753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.037 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds