Wall clock time and date at job start Tue Mar 31 2020 16:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42908 * 113.99800 * 2 1 4 4 C 1.50700 * 109.46769 * 180.02562 * 3 2 1 5 5 N 1.30712 * 125.52526 * 269.95623 * 4 3 2 6 6 N 1.40447 * 106.78985 * 179.79225 * 5 4 3 7 7 H 0.97001 * 126.81980 * 180.25844 * 6 5 4 8 8 C 1.34425 * 106.35666 * 0.40021 * 6 5 4 9 9 C 1.50702 * 125.96410 * 179.86321 * 8 6 5 10 10 N 1.46500 * 109.47105 * 94.71668 * 9 8 6 11 11 C 1.34776 * 119.99935 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99727 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.39467 * 119.99900 * 185.06073 * 13 11 10 15 15 C 1.38638 * 119.64774 * 185.36133 * 14 13 11 16 16 C 1.40826 * 118.67723 * 179.74795 * 15 14 13 17 17 C 1.41538 * 120.99778 * 180.23134 * 16 15 14 18 18 H 1.07999 * 119.99845 * 153.81888 * 17 16 15 19 19 C 1.40030 * 120.00314 * 333.81295 * 17 16 15 20 20 N 1.30746 * 119.99649 * 350.11466 * 19 17 16 21 21 Si 1.86801 * 120.00112 * 170.11842 * 19 17 16 22 22 H 1.48497 * 109.47179 * 90.00317 * 21 19 17 23 23 H 1.48500 * 109.46733 * 210.00043 * 21 19 17 24 24 H 1.48494 * 109.47000 * 329.99994 * 21 19 17 25 25 C 1.41165 * 118.00055 * 0.24366 * 16 15 14 26 26 C 1.36593 * 119.12717 * 0.02562 * 25 16 15 27 27 N 1.32066 * 121.26178 * 0.02562 * 26 25 16 28 28 N 1.30838 * 108.07417 * 359.59762 * 8 6 5 29 29 H 1.08998 * 109.46577 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46616 * 300.00045 * 1 2 3 31 31 H 1.09000 * 109.47146 * 60.00198 * 1 2 3 32 32 H 1.08999 * 109.47066 * 59.99888 * 3 2 1 33 33 H 1.09007 * 109.46683 * 299.99675 * 3 2 1 34 34 H 1.08993 * 109.46686 * 334.71576 * 9 8 6 35 35 H 1.08999 * 109.46756 * 214.71279 * 9 8 6 36 36 H 0.97001 * 120.00282 * 359.97438 * 10 9 8 37 37 H 0.96995 * 120.00617 * 5.05932 * 13 11 10 38 38 H 1.08006 * 120.66544 * 0.02562 * 15 14 13 39 39 H 0.97000 * 119.99682 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.43150 * 179.97438 * 25 16 15 41 41 H 1.07997 * 119.36607 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2702 1.1271 1.0629 6 7 5.5955 1.0170 0.6112 7 1 6.3928 0.9494 1.1595 8 6 5.5398 1.0269 -0.7319 9 6 6.7177 0.9340 -1.6673 10 7 6.9166 -0.4619 -2.0649 11 6 7.9200 -0.7872 -2.9038 12 8 8.6599 0.0780 -3.3309 13 7 8.1033 -2.0714 -3.2692 14 6 9.2029 -2.4237 -4.0514 15 6 9.3254 -3.7240 -4.5164 16 6 10.4411 -4.0560 -5.3090 17 6 10.6125 -5.3673 -5.8135 18 1 11.1820 -5.5280 -6.7170 19 6 10.0438 -6.4561 -5.1414 20 7 9.5228 -6.2914 -3.9536 21 14 10.0296 -8.1440 -5.9416 22 1 11.2656 -8.8784 -5.5699 23 1 8.8427 -8.9037 -5.4735 24 1 9.9693 -7.9915 -7.4175 25 6 11.3835 -3.0418 -5.5848 26 6 11.1805 -1.7899 -5.0777 27 7 10.1227 -1.5138 -4.3368 28 7 4.2839 1.1256 -1.0853 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8901 34 1 7.6121 1.2990 -1.1624 35 1 6.5272 1.5404 -2.5527 36 1 6.3266 -1.1522 -1.7238 37 1 7.4706 -2.7507 -2.9882 38 1 8.5778 -4.4665 -4.2793 39 1 9.1285 -7.0455 -3.4881 40 1 12.2538 -3.2533 -6.1882 41 1 11.8992 -1.0112 -5.2860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414483753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:21 Heat of formation + Delta-G solvation = 37.054383 kcal Electronic energy + Delta-G solvation = -26559.699849 eV Core-core repulsion = 22476.342711 eV Total energy + Delta-G solvation = -4083.357138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.44939 -41.40953 -39.82112 -38.85095 -36.47002 -35.88313 -35.48292 -34.03468 -32.91355 -32.36551 -30.55596 -29.28238 -27.98570 -27.76180 -26.65693 -23.86018 -23.56864 -22.64015 -21.79340 -21.76597 -19.92960 -19.41252 -19.04956 -17.90802 -17.67805 -17.13150 -16.75763 -16.68165 -16.57713 -16.43483 -16.05466 -15.97744 -15.82121 -15.31520 -14.86434 -14.63897 -14.47418 -14.31371 -14.00431 -13.59996 -13.29810 -13.18762 -13.10420 -12.84188 -12.66617 -12.42891 -12.06928 -11.89582 -11.50465 -11.41992 -11.37099 -11.32720 -11.16657 -10.90659 -10.73891 -10.26560 -9.89059 -9.61363 -8.84135 -8.55955 -6.55338 0.15630 0.85468 1.03274 1.21841 1.37075 1.42678 1.54504 1.59028 1.84843 2.21242 2.24418 2.53660 2.86649 3.08592 3.17093 3.42131 3.61090 3.79045 4.15313 4.19864 4.22250 4.46975 4.51412 4.53993 4.62089 4.74736 4.85938 4.89304 4.94258 4.95679 5.07998 5.12448 5.22440 5.26857 5.52147 5.67035 5.75779 5.90972 5.99532 6.09015 6.27528 6.58196 6.80495 6.81470 6.85088 6.90579 7.55083 7.88981 8.30687 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002241 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.915568 B =12491.359249 C =14046.856930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.156 3.844 4 C 0.213 3.787 5 N -0.302 5.302 6 N -0.452 5.452 7 H 0.459 0.541 8 C 0.280 3.720 9 C 0.227 3.773 10 N -0.729 5.729 11 C 0.700 3.300 12 O -0.570 6.570 13 N -0.659 5.659 14 C 0.352 3.648 15 C -0.259 4.259 16 C 0.113 3.887 17 C -0.482 4.482 18 H 0.083 0.917 19 C 0.036 3.964 20 N -0.817 5.817 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.295 4.295 26 C 0.114 3.886 27 N -0.575 5.575 28 N -0.534 5.534 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.407 0.593 37 H 0.419 0.581 38 H 0.128 0.872 39 H 0.290 0.710 40 H 0.116 0.884 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 9.480 10.398 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.078 3.922 4 C -0.070 4.070 5 N -0.134 5.134 6 N -0.173 5.173 7 H 0.309 0.691 8 C 0.000 4.000 9 C 0.101 3.899 10 N -0.389 5.389 11 C 0.400 3.600 12 O -0.444 6.444 13 N -0.308 5.308 14 C 0.125 3.875 15 C -0.285 4.285 16 C 0.104 3.896 17 C -0.513 4.513 18 H 0.101 0.899 19 C -0.180 4.180 20 N -0.443 5.443 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.319 4.319 26 C -0.039 4.039 27 N -0.294 5.294 28 N -0.264 5.264 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.243 0.757 37 H 0.257 0.743 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.186 10.958 10.975 21.706 hybrid contribution 0.186 -2.091 0.029 2.099 sum -15.000 8.867 11.004 20.608 Atomic orbital electron populations 1.22993 0.77993 1.04154 1.01670 1.87894 1.22520 1.27196 1.95793 1.20610 0.81659 0.85890 1.04064 1.24312 0.98285 0.98947 0.85407 1.77974 0.87810 1.24998 1.22661 1.48016 1.08429 1.54675 1.06207 0.69140 1.24128 0.94459 0.97120 0.84257 1.19474 0.91239 0.83045 0.96155 1.44777 1.33695 1.09524 1.50924 1.15963 0.81455 0.82795 0.79803 1.91002 1.47481 1.47822 1.58093 1.42387 1.26405 1.08702 1.53309 1.18127 0.87570 0.89823 0.91986 1.21595 1.02558 0.94038 1.10298 1.18025 0.89191 0.93556 0.88808 1.19861 1.30346 0.90973 1.10134 0.89870 1.26802 0.91702 1.05190 0.94303 1.69781 1.28050 1.34979 1.11493 0.85103 0.78984 0.75577 0.79467 1.18831 1.18979 1.18283 1.21873 1.02485 0.95742 1.11750 1.21929 0.93718 0.95251 0.93009 1.67290 1.05061 1.35161 1.21930 1.70380 1.00627 1.23664 1.31693 0.88694 0.92097 0.92383 0.88607 0.88809 0.87087 0.87913 0.75708 0.74346 0.85451 0.89873 0.86622 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.20 10.69 -148.98 -1.59 -9.79 16 3 C 0.16 2.61 6.56 71.24 0.47 3.08 16 4 C 0.21 4.81 7.77 138.63 1.08 5.89 16 5 N -0.30 -6.66 12.80 -51.34 -0.66 -7.32 16 6 N -0.45 -7.85 7.45 -50.70 -0.38 -8.23 16 7 H 0.46 4.97 8.96 -213.09 -1.91 3.06 16 8 C 0.28 5.62 7.61 138.23 1.05 6.67 16 9 C 0.23 4.64 6.30 85.63 0.54 5.18 16 10 N -0.73 -18.10 5.55 -482.31 -2.68 -20.78 16 11 C 0.70 25.27 8.51 179.06 1.52 26.80 16 12 O -0.57 -25.31 14.64 -3.99 -0.06 -25.37 16 13 N -0.66 -25.32 5.40 -322.37 -1.74 -27.06 16 14 C 0.35 17.05 7.41 132.76 0.98 18.04 16 15 C -0.26 -13.25 8.62 23.00 0.20 -13.05 16 16 C 0.11 5.98 5.60 -21.11 -0.12 5.86 16 17 C -0.48 -24.84 9.14 23.52 0.21 -24.62 16 18 H 0.08 4.10 7.87 -2.91 -0.02 4.07 16 19 C 0.04 1.72 5.31 85.29 0.45 2.17 16 20 N -0.82 -39.76 10.70 21.84 0.23 -39.52 16 21 Si 0.99 35.96 29.57 68.60 2.03 37.99 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 23 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 25 C -0.29 -14.47 9.85 22.60 0.22 -14.25 16 26 C 0.11 5.43 11.10 84.27 0.94 6.37 16 27 N -0.57 -29.14 7.90 -194.27 -1.53 -30.67 16 28 N -0.53 -12.89 11.19 -179.73 -2.01 -14.90 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 8.60 8.48 -92.71 -0.79 7.81 16 37 H 0.42 13.29 8.71 -92.71 -0.81 12.48 16 38 H 0.13 6.51 6.11 -2.91 -0.02 6.49 16 39 H 0.29 12.66 8.29 -92.71 -0.77 11.90 16 40 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -74.30 363.51 -1.96 -76.26 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -2.38 Total: 39.72 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 8.80 Total: 29.68 kcal Atomic # 7 Polarization: -139.72 SS G_CDS: -8.76 Total: -148.48 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.65 Total: -35.16 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -74.30 -1.96 -76.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414483753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.316 kcal (2) G-P(sol) polarization free energy of solvation -74.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds