Wall clock time and date at job start Tue Mar 31 2020 16:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47764 * 111.00331 * 2 1 4 4 C 1.55784 * 104.64331 * 146.27344 * 3 2 1 5 5 C 1.54789 * 101.19111 * 322.07559 * 4 3 2 6 6 H 1.08991 * 113.13972 * 275.14126 * 5 4 3 7 7 C 1.53268 * 109.73654 * 148.49837 * 5 4 3 8 8 N 1.46589 * 108.15701 * 264.21078 * 7 5 4 9 9 C 1.34774 * 125.30515 * 182.08508 * 8 7 5 10 10 O 1.21608 * 120.00251 * 355.30931 * 9 8 7 11 11 C 1.47429 * 120.00018 * 175.30751 * 9 8 7 12 12 C 1.39682 * 120.21169 * 39.46680 * 11 9 8 13 13 C 1.37807 * 119.93370 * 179.97438 * 12 11 9 14 14 C 1.38655 * 120.38643 * 359.97438 * 13 12 11 15 15 C 1.37907 * 120.43688 * 0.02562 * 14 13 12 16 16 C 1.39108 * 120.05066 * 359.97438 * 15 14 13 17 17 S 1.76198 * 120.19114 * 180.02562 * 16 15 14 18 18 C 1.76202 * 99.99957 * 351.86298 * 17 16 15 19 19 H 1.08001 * 119.99844 * 4.90741 * 18 17 16 20 20 C 1.38807 * 120.00201 * 184.90226 * 18 17 16 21 21 N 1.31548 * 120.00314 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99918 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47062 * 89.99873 * 22 20 18 24 24 H 1.48500 * 109.47294 * 210.00019 * 22 20 18 25 25 H 1.48499 * 109.47148 * 330.00128 * 22 20 18 26 26 C 1.46605 * 109.38372 * 2.35801 * 8 7 5 27 27 C 1.47630 * 110.99724 * 121.14372 * 2 1 3 28 28 H 1.08992 * 112.29030 * 1.33121 * 27 2 1 29 29 H 1.09003 * 109.46878 * 298.86492 * 1 2 3 30 30 H 1.08998 * 109.47015 * 58.85803 * 1 2 3 31 31 H 1.08996 * 109.47508 * 178.86181 * 1 2 3 32 32 H 1.09003 * 110.36039 * 264.72727 * 3 2 1 33 33 H 1.08996 * 110.36462 * 26.92772 * 3 2 1 34 34 H 1.09001 * 110.62380 * 204.37464 * 4 3 2 35 35 H 1.08995 * 111.74598 * 80.26286 * 4 3 2 36 36 H 1.09003 * 109.73831 * 144.52622 * 7 5 4 37 37 H 1.09002 * 109.74101 * 23.90167 * 7 5 4 38 38 H 1.07993 * 120.03132 * 359.96210 * 12 11 9 39 39 H 1.08004 * 119.80475 * 180.02562 * 13 12 11 40 40 H 1.07999 * 119.78140 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.97446 * 180.27513 * 15 14 13 42 42 H 0.96997 * 120.00543 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.92048 * 101.26999 * 26 8 7 44 44 H 1.09004 * 109.90781 * 222.55608 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3795 0.0000 4 6 3.3101 1.2978 0.8369 5 6 2.8990 0.2956 1.9426 6 1 2.3876 0.7687 2.7808 7 6 4.1202 -0.5193 2.3825 8 7 4.1187 -1.7823 1.6384 9 6 5.0182 -2.7749 1.7869 10 8 5.9709 -2.6264 2.5280 11 6 4.8472 -4.0409 1.0510 12 6 4.3947 -4.0301 -0.2705 13 6 4.2374 -5.2168 -0.9532 14 6 4.5264 -6.4245 -0.3363 15 6 4.9741 -6.4533 0.9678 16 6 5.1394 -5.2662 1.6740 17 16 5.7118 -5.2987 3.3401 18 6 5.6678 -7.0336 3.6449 19 1 5.4182 -7.7161 2.8460 20 6 5.9541 -7.5232 4.9119 21 7 5.9217 -8.8184 5.1394 22 14 6.3853 -6.3427 6.2939 23 1 5.1452 -5.9359 7.0024 24 1 7.3039 -7.0130 7.2490 25 1 7.0495 -5.1407 5.7290 26 6 2.9901 -1.7945 0.7028 27 6 1.9980 -0.7128 1.1796 28 1 1.2049 -1.1193 1.8070 29 1 -0.3633 0.4961 0.9000 30 1 -0.3633 0.5315 -0.8796 31 1 -0.3634 -1.0274 -0.0204 32 1 2.2223 1.6999 -1.0176 33 1 1.2841 2.0601 0.4628 34 1 3.5549 2.2708 1.2628 35 1 4.1415 0.9105 0.2480 36 1 4.0616 -0.7222 3.4519 37 1 5.0320 0.0362 2.1632 38 1 4.1682 -3.0927 -0.7566 39 1 3.8878 -5.2060 -1.9750 40 1 4.4000 -7.3486 -0.8806 41 1 5.2012 -7.3979 1.4396 42 1 6.1221 -9.1606 6.0246 43 1 3.3395 -1.5642 -0.3037 44 1 2.5071 -2.7716 0.7165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417873173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:01 Heat of formation + Delta-G solvation = -5.360651 kcal Electronic energy + Delta-G solvation = -26305.401680 eV Core-core repulsion = 22734.205751 eV Total energy + Delta-G solvation = -3571.195929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82007 -40.28541 -38.94337 -36.69130 -34.85950 -33.54329 -32.06405 -31.93049 -30.55475 -29.23965 -28.04158 -25.73947 -25.70014 -23.61147 -23.55433 -22.03471 -21.21734 -20.84637 -19.71856 -18.42848 -17.80318 -17.58437 -17.16857 -16.79713 -16.38837 -16.12719 -15.68362 -15.45954 -15.20829 -15.17460 -14.72036 -14.60566 -14.23820 -13.92562 -13.89942 -13.74984 -13.68737 -13.49693 -13.28323 -13.15199 -13.00844 -12.59384 -12.34141 -12.31740 -12.18008 -11.91345 -11.78499 -11.65729 -11.50934 -11.38846 -11.26937 -10.60574 -10.44659 -9.89824 -9.65462 -9.32609 -8.72628 -8.62444 -6.35570 0.01533 0.43550 0.96234 1.19837 1.37369 1.56658 1.70107 1.97877 2.12285 2.57555 2.73160 2.85498 2.88619 3.40678 3.42544 3.71512 3.78285 3.95421 4.14365 4.18188 4.22574 4.27604 4.36715 4.47473 4.52682 4.53270 4.57937 4.67148 4.69113 4.74920 4.81687 4.84511 4.89031 5.04616 5.05343 5.08812 5.15329 5.25168 5.31100 5.41246 5.48022 5.58445 5.64211 5.95943 6.01920 6.13711 6.14461 6.40167 6.80253 7.11049 8.48624 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003659 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.104643 B = 7650.128623 C = 8669.892504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.046 3.954 4 C -0.118 4.118 5 C -0.110 4.110 6 H 0.117 0.883 7 C 0.113 3.887 8 N -0.609 5.609 9 C 0.571 3.429 10 O -0.563 6.563 11 C -0.161 4.161 12 C -0.063 4.063 13 C -0.140 4.140 14 C -0.073 4.073 15 C -0.164 4.164 16 C -0.049 4.049 17 S -0.031 6.031 18 C -0.566 4.566 19 H 0.086 0.914 20 C 0.056 3.944 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.256 1.256 24 H -0.250 1.250 25 H -0.244 1.244 26 C 0.112 3.888 27 C 0.067 3.933 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.281 0.719 43 H 0.091 0.909 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.779 21.571 -13.962 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.081 4.081 4 C -0.156 4.156 5 C -0.130 4.130 6 H 0.135 0.865 7 C -0.010 4.010 8 N -0.342 5.342 9 C 0.361 3.639 10 O -0.443 6.443 11 C -0.173 4.173 12 C -0.083 4.083 13 C -0.162 4.162 14 C -0.093 4.093 15 C -0.189 4.189 16 C -0.166 4.166 17 S 0.222 5.778 18 C -0.712 4.712 19 H 0.104 0.896 20 C -0.151 4.151 21 N -0.540 5.540 22 Si 0.726 3.274 23 H -0.181 1.181 24 H -0.174 1.174 25 H -0.168 1.168 26 C -0.011 4.011 27 C -0.043 4.043 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.168 0.832 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.647 22.027 -12.879 28.049 hybrid contribution -0.099 -1.168 1.091 1.601 sum -11.746 20.859 -11.789 26.684 Atomic orbital electron populations 1.22569 0.86203 1.02697 1.01417 1.63392 1.09178 1.15050 1.38247 1.23284 0.95068 0.88571 1.01196 1.22913 0.97761 0.99389 0.95541 1.23112 0.94322 0.96028 0.99520 0.86543 1.21710 0.99394 0.84001 0.95877 1.48010 1.28318 1.16895 1.41001 1.18085 0.81515 0.83157 0.81118 1.90774 1.31952 1.81305 1.40249 1.19423 1.10127 0.90442 0.97340 1.21591 0.95115 1.00467 0.91128 1.21388 1.02472 0.90728 1.01608 1.21537 0.94944 1.00179 0.92661 1.21457 1.03932 0.96955 0.96523 1.22309 0.99656 0.95901 0.98695 1.83583 1.76704 1.08792 1.08710 1.23219 1.55107 0.92058 1.00852 0.89641 1.25521 0.93018 0.96544 1.00009 1.69955 1.46504 1.13292 1.24237 0.86055 0.80479 0.80520 0.80377 1.18073 1.17405 1.16839 1.22338 0.85795 0.99844 0.93088 1.23226 0.96138 0.94135 0.90770 0.88971 0.94855 0.90109 0.91216 0.89252 0.91932 0.88747 0.91210 0.92944 0.91418 0.82477 0.81277 0.83153 0.86639 0.90953 0.89134 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.19 127.69 1.17 1.37 16 2 N -0.53 -7.05 4.91 -879.88 -4.32 -11.36 16 3 C 0.05 0.47 6.76 87.10 0.59 1.06 16 4 C -0.12 -1.42 6.27 32.17 0.20 -1.22 16 5 C -0.11 -1.70 3.89 -9.31 -0.04 -1.74 16 6 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 7 C 0.11 2.73 6.27 86.45 0.54 3.27 16 8 N -0.61 -17.79 3.31 -822.07 -2.72 -20.51 16 9 C 0.57 22.57 7.13 86.66 0.62 23.19 16 10 O -0.56 -27.13 15.44 -4.05 -0.06 -27.19 16 11 C -0.16 -6.29 5.46 -19.95 -0.11 -6.40 16 12 C -0.06 -1.80 8.05 22.52 0.18 -1.62 16 13 C -0.14 -3.54 10.02 22.27 0.22 -3.31 16 14 C -0.07 -2.28 10.03 22.29 0.22 -2.05 16 15 C -0.16 -7.06 9.24 22.40 0.21 -6.86 16 16 C -0.05 -2.31 6.13 23.04 0.14 -2.17 16 17 S -0.03 -1.71 17.32 -56.49 -0.98 -2.69 16 18 C -0.57 -34.13 9.62 67.96 0.65 -33.48 16 19 H 0.09 5.38 5.09 -2.91 -0.01 5.36 16 20 C 0.06 3.34 5.50 84.87 0.47 3.81 16 21 N -0.90 -55.26 13.96 21.65 0.30 -54.95 16 22 Si 0.90 45.48 27.74 68.60 1.90 47.38 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.25 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.24 -12.55 6.74 99.48 0.67 -11.88 16 26 C 0.11 2.38 4.82 86.81 0.42 2.80 16 27 C 0.07 1.09 3.70 46.00 0.17 1.26 16 28 H 0.09 1.49 7.72 -2.39 -0.02 1.47 16 29 H 0.03 0.31 8.11 -2.39 -0.02 0.29 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.51 7.78 -2.39 -0.02 0.49 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.04 7.88 -2.39 -0.02 1.02 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.66 7.74 -2.39 -0.02 1.64 16 38 H 0.16 3.36 5.53 -2.91 -0.02 3.35 16 39 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.12 5.67 4.99 -2.91 -0.01 5.65 16 42 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.09 1.73 6.65 -2.39 -0.02 1.71 16 44 H 0.07 1.66 7.03 -2.38 -0.02 1.64 16 Total: -1.00 -76.99 357.48 0.77 -76.22 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.98 Total: 15.18 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 5.66 Total: -22.08 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -6.73 Total: -86.82 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -0.98 Total: -2.69 kcal Total: -76.99 0.77 -76.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417873173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.864 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds