Wall clock time and date at job start Tue Mar 31 2020 16:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48507 * 109.46784 * 269.99679 * 3 2 1 5 5 H 1.48494 * 109.47358 * 30.00097 * 3 2 1 6 6 H 1.48504 * 109.47182 * 150.00099 * 3 2 1 7 7 C 1.37874 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 172.26848 * 7 2 1 9 9 C 1.50700 * 120.00181 * 352.26390 * 7 2 1 10 10 C 1.53002 * 115.55111 * 294.76190 * 9 7 2 11 11 N 1.46497 * 109.46712 * 275.61874 * 10 9 7 12 12 C 1.34780 * 119.99848 * 185.00446 * 11 10 9 13 13 O 1.21590 * 119.99819 * 4.87484 * 12 11 10 14 14 C 1.47523 * 120.00101 * 184.87710 * 12 11 10 15 15 C 1.39742 * 120.76656 * 354.66742 * 14 12 11 16 16 C 1.38895 * 118.87289 * 179.97438 * 15 14 12 17 17 C 1.37848 * 119.43349 * 359.79728 * 16 15 14 18 18 N 1.32752 * 120.42618 * 0.37679 * 17 16 15 19 19 C 1.31856 * 122.58322 * 359.69672 * 18 17 16 20 20 O 1.35425 * 119.89252 * 180.02562 * 19 18 17 21 21 C 1.50805 * 122.25288 * 180.77279 * 17 16 15 22 22 C 1.52697 * 110.59305 * 341.95671 * 21 17 16 23 23 C 1.53318 * 108.43598 * 51.40633 * 22 21 17 24 24 C 1.50544 * 117.76644 * 179.75941 * 16 15 14 25 25 H 1.08996 * 109.24967 * 282.63312 * 24 16 15 26 26 O 1.42905 * 109.25405 * 42.10250 * 24 16 15 27 27 C 1.53003 * 117.51662 * 80.45747 * 9 7 2 28 28 C 1.52995 * 117.50162 * 149.08521 * 9 7 2 29 29 H 0.97005 * 120.00075 * 5.00514 * 1 2 3 30 30 H 1.09000 * 109.47053 * 155.62143 * 10 9 7 31 31 H 1.08994 * 109.47000 * 35.62025 * 10 9 7 32 32 H 0.96996 * 120.00447 * 5.00541 * 11 10 9 33 33 H 1.08002 * 120.56834 * 359.95468 * 15 14 12 34 34 H 0.96695 * 114.00079 * 269.98640 * 20 19 18 35 35 H 1.09002 * 109.24894 * 102.24576 * 21 17 16 36 36 H 1.09001 * 109.24904 * 221.66930 * 21 17 16 37 37 H 1.09007 * 109.66900 * 171.14122 * 22 21 17 38 38 H 1.09001 * 109.67284 * 291.63338 * 22 21 17 39 39 H 1.08999 * 109.69188 * 170.35294 * 23 22 21 40 40 H 1.09005 * 109.68629 * 49.78081 * 23 22 21 41 41 H 0.96701 * 113.99370 * 300.00036 * 26 24 16 42 42 H 1.09000 * 117.50180 * 214.97197 * 27 9 7 43 43 H 1.09005 * 117.49840 * 359.97438 * 27 9 7 44 44 H 1.09004 * 117.49975 * 359.97438 * 28 9 7 45 45 H 1.08999 * 117.50462 * 144.99626 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1253 9 6 1.2613 -2.4931 0.1768 10 6 0.5835 -2.6867 1.5348 11 7 1.5557 -3.2154 2.4947 12 6 1.1582 -3.5612 3.7353 13 8 -0.0207 -3.5185 4.0299 14 6 2.1534 -3.9915 4.7356 15 6 3.4963 -4.1529 4.3844 16 6 4.4000 -4.5591 5.3578 17 6 3.9547 -4.7884 6.6421 18 7 2.6724 -4.6305 6.9473 19 6 1.7735 -4.2484 6.0615 20 8 0.4791 -4.1040 6.4327 21 6 4.8829 -5.2143 7.7517 22 6 6.1868 -5.7656 7.1793 23 6 6.7465 -4.7467 6.1797 24 6 5.8392 -4.7304 4.9509 25 1 5.9503 -5.6703 4.4103 26 8 6.2199 -3.6485 4.0984 27 6 0.5627 -3.0801 -1.0514 28 6 1.8353 -3.7342 -0.5095 29 1 -0.4850 0.8369 -0.0733 30 1 -0.2436 -3.3890 1.4312 31 1 0.2046 -1.7290 1.8915 32 1 2.4855 -3.3165 2.2376 33 1 3.8259 -3.9653 3.3732 34 1 -0.0507 -4.9066 6.3322 35 1 5.1033 -4.3553 8.3855 36 1 4.3980 -5.9862 8.3494 37 1 6.9043 -5.9214 7.9850 38 1 5.9941 -6.7107 6.6717 39 1 7.7559 -5.0357 5.8871 40 1 6.7649 -3.7568 6.6357 41 1 5.6976 -3.5846 3.2871 42 1 -0.3796 -3.6043 -0.8920 43 1 0.6403 -2.5265 -1.9871 44 1 2.7503 -3.6110 -1.0889 45 1 1.7303 -4.6886 0.0064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467644772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:44 Heat of formation + Delta-G solvation = -73.803505 kcal Electronic energy + Delta-G solvation = -28824.560858 eV Core-core repulsion = 24807.644153 eV Total energy + Delta-G solvation = -4016.916705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.25228 -39.19757 -38.21281 -36.76566 -36.56871 -35.44086 -33.56058 -32.58671 -32.10063 -30.18763 -29.39349 -26.54078 -25.38388 -24.56557 -23.58533 -22.54352 -21.46612 -20.91587 -19.76009 -19.46369 -18.58574 -17.90150 -17.28694 -17.20614 -16.13746 -15.93852 -15.47266 -15.02699 -14.82875 -14.69933 -14.44828 -14.20119 -13.90570 -13.71320 -13.63929 -13.39822 -13.18620 -12.93184 -12.58499 -12.14719 -11.80711 -11.74168 -11.64187 -11.40720 -11.36821 -11.13928 -11.04778 -10.95917 -10.65838 -10.57804 -10.37599 -9.93534 -9.86411 -9.67344 -9.28457 -9.13135 -8.84693 -8.67145 -8.29960 -8.22065 -6.13775 -4.21203 0.49737 0.87759 2.92876 3.23551 3.32714 3.34027 3.36818 3.55265 3.81424 3.92547 4.16737 4.23341 4.31554 4.41829 4.47443 4.62874 4.87438 4.91578 5.02838 5.05895 5.12660 5.25197 5.29411 5.35501 5.42772 5.49111 5.54482 5.64895 5.76435 5.90435 5.90820 5.94547 6.20933 6.21993 6.37884 6.51554 6.55878 6.81179 6.98140 7.13769 7.31797 7.32977 7.42113 7.49044 7.72192 7.78170 8.09735 8.26886 8.66931 8.79449 9.44653 10.93852 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.003550 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.138517 B = 7885.549602 C = 8729.340490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.163 3.837 11 N -0.702 5.702 12 C 0.551 3.449 13 O -0.531 6.531 14 C -0.193 4.193 15 C -0.026 4.026 16 C -0.186 4.186 17 C 0.186 3.814 18 N -0.514 5.514 19 C 0.376 3.624 20 O -0.458 6.458 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.115 4.115 24 C 0.155 3.845 25 H 0.071 0.929 26 O -0.557 6.557 27 C -0.164 4.164 28 C -0.209 4.209 29 H 0.263 0.737 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.394 0.606 33 H 0.142 0.858 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.381 0.619 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.839 -13.599 11.557 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.041 3.959 11 N -0.351 5.351 12 C 0.336 3.664 13 O -0.409 6.409 14 C -0.200 4.200 15 C -0.052 4.052 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.234 5.234 19 C 0.194 3.806 20 O -0.265 6.265 21 C -0.111 4.111 22 C -0.154 4.154 23 C -0.152 4.152 24 C 0.096 3.904 25 H 0.088 0.912 26 O -0.364 6.364 27 C -0.202 4.202 28 C -0.247 4.247 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.160 0.840 34 H 0.264 0.736 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.033 -12.867 13.232 21.502 hybrid contribution 0.258 0.646 -1.706 1.842 sum 11.290 -12.221 11.526 20.240 Atomic orbital electron populations 1.69954 1.05940 1.27169 1.47817 1.24982 0.94806 0.99056 0.94243 0.86624 0.80026 0.83453 0.78169 1.20613 1.21068 1.19697 1.20407 0.93187 0.88688 1.51740 0.92041 1.19067 0.97730 0.91484 0.88355 1.21095 0.88843 0.98116 0.87850 1.46036 1.13403 1.63663 1.12006 1.17751 0.87711 0.78844 0.82131 1.90778 1.17115 1.53839 1.79216 1.21296 0.95267 1.07964 0.95450 1.21638 0.91297 0.92505 0.99742 1.21100 0.98155 1.04972 0.94573 1.20941 0.89440 0.92122 0.92548 1.67111 1.02629 1.15956 1.37654 1.19012 0.85988 0.89816 0.85824 1.84721 1.15343 1.38913 1.87552 1.20502 0.93325 1.02301 0.94976 1.21551 0.96193 0.98626 0.99033 1.21550 0.98734 1.00906 0.94049 1.20471 0.88026 0.90043 0.91909 0.91161 1.86588 1.62271 1.51855 1.35682 1.22712 0.93321 1.03538 1.00632 1.22895 0.97973 0.96824 1.06971 0.92661 0.93793 0.89910 0.77147 0.84030 0.73561 0.89120 0.89116 0.89881 0.91035 0.90217 0.90348 0.76990 0.91608 0.89900 0.90296 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 12.59 55.43 0.70 -23.32 16 2 C 0.07 1.93 5.22 -17.82 -0.09 1.84 16 3 Si 0.89 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.67 8.82 -34.44 -0.30 -12.98 16 8 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 9 C 0.03 0.78 1.32 -155.66 -0.21 0.57 16 10 C 0.16 3.66 5.53 -4.04 -0.02 3.64 16 11 N -0.70 -13.10 5.42 -61.36 -0.33 -13.44 16 12 C 0.55 10.39 7.76 -12.47 -0.10 10.29 16 13 O -0.53 -11.69 15.22 -16.28 -0.25 -11.94 16 14 C -0.19 -3.01 5.90 -104.78 -0.62 -3.63 16 15 C -0.03 -0.32 8.78 -38.78 -0.34 -0.66 16 16 C -0.19 -2.06 5.57 -104.60 -0.58 -2.65 16 17 C 0.19 2.17 6.63 -82.29 -0.55 1.62 16 18 N -0.51 -7.31 10.18 -9.20 -0.09 -7.40 16 19 C 0.38 5.88 7.77 -16.77 -0.13 5.75 16 20 O -0.46 -7.22 11.70 -39.54 -0.46 -7.68 16 21 C -0.07 -0.59 5.91 -27.99 -0.17 -0.76 16 22 C -0.12 -0.68 5.97 -26.72 -0.16 -0.84 16 23 C -0.11 -0.86 5.62 -26.70 -0.15 -1.01 16 24 C 0.16 1.39 3.49 -28.09 -0.10 1.29 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 O -0.56 -5.77 13.15 -35.23 -0.46 -6.23 16 27 C -0.16 -3.57 9.88 -26.73 -0.26 -3.83 16 28 C -0.21 -4.04 9.78 -26.74 -0.26 -4.30 16 29 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 30 H 0.04 1.00 7.87 -51.93 -0.41 0.59 16 31 H 0.08 2.18 7.26 -51.93 -0.38 1.80 16 32 H 0.39 6.35 6.54 -40.82 -0.27 6.08 16 33 H 0.14 1.41 5.15 -52.49 -0.27 1.14 16 34 H 0.40 4.58 9.06 45.56 0.41 4.99 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.38 2.95 7.38 45.56 0.34 3.28 16 42 H 0.07 1.37 8.06 -51.93 -0.42 0.96 16 43 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -32.81 371.88 -9.12 -41.92 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.76 Total: 12.67 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -4.04 Total: -5.64 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.27 Total: -44.15 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -1.17 Total: -25.85 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.81 -9.12 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467644772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.879 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds