Wall clock time and date at job start Tue Mar 31 2020 16:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00375 * 2 1 4 4 C 1.52995 * 109.47082 * 89.99928 * 3 2 1 5 5 N 1.46505 * 109.47109 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00054 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00076 * 355.01274 * 6 5 4 8 8 C 1.50701 * 120.00159 * 175.29251 * 6 5 4 9 9 C 1.53004 * 115.54574 * 303.06152 * 8 6 5 10 10 C 1.52997 * 109.46956 * 294.74791 * 9 8 6 11 11 F 1.39899 * 109.46896 * 175.87202 * 10 9 8 12 12 C 1.52999 * 117.49991 * 157.38833 * 8 6 5 13 13 C 1.52998 * 117.49754 * 88.72592 * 8 6 5 14 14 C 1.34776 * 119.99868 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00155 * 179.97438 * 14 2 1 16 16 C 1.50703 * 120.00294 * 0.02562 * 14 2 1 17 17 S 1.80990 * 109.47327 * 179.97438 * 16 14 2 18 18 C 1.76198 * 100.00214 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99839 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00452 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47062 * 90.00053 * 22 20 18 24 24 H 1.48502 * 109.47355 * 209.99799 * 22 20 18 25 25 H 1.48499 * 109.47139 * 330.00063 * 22 20 18 26 26 H 1.08995 * 109.47170 * 89.99946 * 1 2 3 27 27 H 1.09000 * 109.47179 * 210.00124 * 1 2 3 28 28 H 1.08997 * 109.46915 * 329.99660 * 1 2 3 29 29 H 1.09002 * 109.46933 * 330.00156 * 3 2 1 30 30 H 1.09004 * 109.47541 * 210.00317 * 3 2 1 31 31 H 1.08997 * 109.47363 * 60.00630 * 4 3 2 32 32 H 1.08996 * 109.47792 * 300.00224 * 4 3 2 33 33 H 0.96995 * 120.00306 * 0.02562 * 5 4 3 34 34 H 1.09000 * 109.47267 * 54.75031 * 9 8 6 35 35 H 1.09004 * 109.46848 * 174.75002 * 9 8 6 36 36 H 1.09003 * 109.46786 * 295.86581 * 10 9 8 37 37 H 1.08995 * 109.47250 * 55.86485 * 10 9 8 38 38 H 1.09000 * 117.49682 * 0.02562 * 12 8 6 39 39 H 1.09003 * 117.49516 * 145.02193 * 12 8 6 40 40 H 1.09001 * 117.49842 * 214.97508 * 13 8 6 41 41 H 1.08994 * 117.50147 * 359.97438 * 13 8 6 42 42 H 1.09001 * 109.47005 * 300.00033 * 16 14 2 43 43 H 1.08998 * 109.46834 * 59.99722 * 16 14 2 44 44 H 0.97006 * 120.00029 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1846 2.9793 1.4425 6 6 3.5220 3.5627 2.6097 7 8 3.1421 3.0858 3.6581 8 6 4.3659 4.8113 2.6119 9 6 5.7189 4.6943 1.9071 10 6 6.6042 3.7025 2.6643 11 9 7.8050 3.5241 1.9689 12 6 4.2866 5.7154 3.8435 13 6 3.6393 6.1551 2.5278 14 6 2.1388 -1.1672 -0.0005 15 8 3.3517 -1.1673 -0.0010 16 6 1.3854 -2.4724 -0.0017 17 16 2.5615 -3.8480 -0.0029 18 6 1.4415 -5.2082 -0.0049 19 1 0.3761 -5.0305 -0.0055 20 6 1.9281 -6.5080 -0.0057 21 7 3.2264 -6.7247 -0.0056 22 14 0.7407 -7.9500 -0.0071 23 1 0.4264 -8.3311 -1.4076 24 1 1.3618 -9.1035 0.6922 25 1 -0.5102 -7.5619 0.6928 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6085 2.0283 -0.5138 30 1 3.1500 1.1383 -0.5139 31 1 3.0417 0.9507 1.9563 32 1 1.5002 1.8407 1.9564 33 1 3.4266 3.3997 0.6025 34 1 5.5680 4.3414 0.8870 35 1 6.2031 5.6707 1.8859 36 1 6.8156 4.0912 3.6604 37 1 6.0880 2.7463 2.7493 38 1 3.6243 5.4070 4.6525 39 1 5.1983 6.2274 4.1516 40 1 4.1256 6.9562 1.9710 41 1 2.5511 6.1362 2.4706 42 1 0.7584 -2.5307 0.8880 43 1 0.7591 -2.5294 -0.8919 44 1 3.5666 -7.6332 -0.0058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528422866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:00 Heat of formation + Delta-G solvation = -129.892874 kcal Electronic energy + Delta-G solvation = -25628.445774 eV Core-core repulsion = 21621.080498 eV Total energy + Delta-G solvation = -4007.365276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.66309 -41.39740 -40.82906 -38.09615 -37.12342 -35.70508 -34.59774 -32.32633 -31.86852 -29.72202 -27.71256 -27.53689 -25.63573 -24.36886 -23.48751 -23.07780 -21.10597 -20.30561 -19.53202 -18.24325 -18.09366 -17.63579 -17.23712 -16.96722 -16.91310 -16.86596 -16.53404 -16.26940 -15.98888 -15.77604 -15.47964 -15.15887 -14.63966 -14.41996 -14.30575 -14.28199 -13.76862 -13.58988 -13.42930 -13.26238 -13.17945 -13.07722 -12.89293 -12.66160 -12.62920 -12.43036 -12.40925 -11.86627 -11.73399 -11.53051 -11.15283 -11.12153 -10.99551 -10.86382 -10.28410 -10.25449 -9.81592 -8.69289 -8.35809 -6.14483 1.22300 1.39889 1.41827 1.43636 1.50252 1.55148 1.83648 2.25780 2.34198 2.63466 2.98402 3.24667 3.37694 3.62539 3.66309 3.70023 3.74202 3.81636 3.92858 3.99286 4.10968 4.17509 4.19746 4.30643 4.33665 4.46421 4.46631 4.67173 4.69998 4.73581 4.79837 4.84518 4.91971 4.95198 4.98655 5.04409 5.20750 5.23589 5.40482 5.51043 6.17354 6.19478 6.41625 7.05311 7.07718 7.12544 8.73487 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.002171 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.073309 B =12892.550319 C =13742.978662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.112 3.888 4 C 0.112 3.888 5 N -0.708 5.708 6 C 0.543 3.457 7 O -0.583 6.583 8 C -0.174 4.174 9 C -0.098 4.098 10 C 0.054 3.946 11 F -0.231 7.231 12 C -0.150 4.150 13 C -0.123 4.123 14 C 0.530 3.470 15 O -0.562 6.562 16 C -0.124 4.124 17 S -0.157 6.157 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.257 1.257 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.419 0.581 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 30.825 1.004 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.361 5.361 6 C 0.330 3.670 7 O -0.462 6.462 8 C -0.177 4.177 9 C -0.136 4.136 10 C 0.000 4.000 11 F -0.212 7.212 12 C -0.188 4.188 13 C -0.160 4.160 14 C 0.317 3.683 15 O -0.439 6.439 16 C -0.275 4.275 17 S 0.070 5.930 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.181 1.181 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.992 30.347 1.706 30.542 hybrid contribution -1.430 -1.440 -0.124 2.033 sum -4.422 28.907 1.582 29.286 Atomic orbital electron populations 1.22161 0.76389 1.04827 1.03841 1.47721 1.08692 1.04279 1.73637 1.21608 0.99117 0.85528 0.94835 1.21546 0.96529 0.84879 0.98415 1.45650 1.57802 1.23288 1.09333 1.20128 0.79129 0.84731 0.82989 1.90716 1.56146 1.66041 1.33324 1.21262 0.97611 0.90699 1.08110 1.21621 0.90934 1.01694 0.99319 1.22095 0.81109 1.00448 0.96396 1.92750 1.49402 1.96967 1.82098 1.23152 1.04369 0.99893 0.91355 1.23244 1.00313 0.92937 0.99520 1.20215 0.87313 0.85645 0.75105 1.90693 1.15671 1.87463 1.50122 1.23375 1.02704 0.94877 1.06504 1.85614 1.12810 0.97501 1.97040 1.23184 0.94606 0.92547 1.58845 0.89804 1.26158 0.97624 1.01773 0.93744 1.70191 1.14168 1.22473 1.48020 0.84937 0.77849 0.76231 0.78859 1.19147 1.20410 1.18128 0.90265 0.90882 0.88100 0.85201 0.90575 0.95172 0.90871 0.74403 0.89169 0.86792 0.89034 0.93257 0.89491 0.85582 0.84557 0.88115 0.87520 0.87079 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.24 127.77 1.31 2.38 16 2 N -0.61 -14.93 2.87 -846.78 -2.43 -17.36 16 3 C 0.11 2.14 5.52 86.38 0.48 2.62 16 4 C 0.11 2.48 6.00 86.38 0.52 3.00 16 5 N -0.71 -12.17 5.54 -463.06 -2.56 -14.73 16 6 C 0.54 11.41 6.46 87.66 0.57 11.98 16 7 O -0.58 -18.09 16.50 -3.04 -0.05 -18.14 16 8 C -0.17 -2.19 1.91 -52.93 -0.10 -2.29 16 9 C -0.10 -1.05 5.53 30.59 0.17 -0.88 16 10 C 0.05 0.94 7.47 71.98 0.54 1.48 16 11 F -0.23 -5.17 17.36 44.97 0.78 -4.39 16 12 C -0.15 -1.65 9.77 30.62 0.30 -1.35 16 13 C -0.12 -0.84 9.93 30.62 0.30 -0.54 16 14 C 0.53 19.63 7.69 87.66 0.67 20.30 16 15 O -0.56 -26.09 15.44 -3.03 -0.05 -26.14 16 16 C -0.12 -4.92 4.71 71.24 0.34 -4.59 16 17 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 18 C -0.54 -31.21 9.50 67.95 0.65 -30.57 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.25 6.44 -2.39 -0.02 1.23 16 28 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 29 H 0.13 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.08 1.75 7.42 -2.39 -0.02 1.73 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.42 4.24 8.31 -92.71 -0.77 3.47 16 34 H 0.09 0.86 7.98 -2.39 -0.02 0.84 16 35 H 0.11 0.67 8.09 -2.38 -0.02 0.65 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.09 7.59 -2.39 -0.02 1.07 16 38 H 0.09 1.36 7.85 -2.39 -0.02 1.34 16 39 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.11 3.88 7.40 -2.39 -0.02 3.87 16 43 H 0.11 3.94 8.11 -2.40 -0.02 3.92 16 44 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -87.38 391.04 3.28 -84.10 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.24 Total: 14.50 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.20 Total: 2.67 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -4.71 Total: -88.43 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.10 Total: -44.28 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -87.38 3.28 -84.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528422866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.792 kcal (2) G-P(sol) polarization free energy of solvation -87.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds