Wall clock time and date at job start Tue Mar 31 2020 17:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48492 * 109.47218 * 270.00223 * 3 2 1 5 5 H 1.48501 * 109.46850 * 30.00284 * 3 2 1 6 6 H 1.48503 * 109.46874 * 150.00136 * 3 2 1 7 7 C 1.38810 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00140 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00022 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00023 * 179.97438 * 9 7 2 11 11 H 1.08988 * 109.47406 * 325.00333 * 10 9 7 12 12 C 1.53003 * 109.47232 * 205.00014 * 10 9 7 13 13 N 1.46502 * 109.46704 * 55.00444 * 12 10 9 14 14 C 1.34781 * 119.99697 * 180.02562 * 13 12 10 15 15 O 1.21586 * 120.00167 * 359.97438 * 14 13 12 16 16 C 1.47609 * 119.99922 * 180.02562 * 14 13 12 17 17 C 1.39704 * 120.09634 * 359.97438 * 16 14 13 18 18 C 1.37721 * 119.96488 * 179.77293 * 17 16 14 19 19 C 1.39017 * 120.27002 * 0.23680 * 18 17 16 20 20 C 1.39261 * 120.04234 * 359.95945 * 19 18 17 21 21 C 1.38285 * 119.96172 * 0.11282 * 20 19 18 22 22 O 1.36152 * 120.75454 * 180.21090 * 20 19 18 23 23 C 1.43169 * 116.69655 * 342.76456 * 22 20 19 24 24 C 1.53472 * 108.21631 * 46.23140 * 23 22 20 25 25 O 1.35964 * 119.23620 * 179.82538 * 19 18 17 26 26 C 1.53005 * 109.46690 * 85.00681 * 10 9 7 27 27 C 1.52995 * 117.49978 * 8.74149 * 26 10 9 28 28 C 1.53005 * 117.49742 * 300.08084 * 26 10 9 29 29 H 0.97007 * 119.99952 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99661 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47156 * 295.01003 * 12 10 9 32 32 H 1.08998 * 109.47331 * 174.99963 * 12 10 9 33 33 H 0.97000 * 120.00425 * 359.97438 * 13 12 10 34 34 H 1.08002 * 120.02133 * 0.06049 * 17 16 14 35 35 H 1.07996 * 119.86790 * 180.24706 * 18 17 16 36 36 H 1.07999 * 120.02101 * 179.91248 * 21 20 19 37 37 H 1.08997 * 109.71721 * 286.55180 * 23 22 20 38 38 H 1.08997 * 109.71602 * 165.90487 * 23 22 20 39 39 H 1.09002 * 109.70818 * 180.49220 * 24 23 22 40 40 H 1.08999 * 109.74055 * 59.89103 * 24 23 22 41 41 H 1.09003 * 115.54897 * 154.41879 * 26 10 9 42 42 H 1.08993 * 117.50150 * 0.02562 * 27 26 10 43 43 H 1.09004 * 117.49956 * 145.02493 * 27 26 10 44 44 H 1.08993 * 117.49797 * 214.98313 * 28 26 10 45 45 H 1.09007 * 117.49620 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5651 -3.2063 0.5886 12 6 5.4996 -2.2588 0.6080 13 7 5.3625 -1.6635 1.9396 14 6 6.4607 -1.3852 2.6696 15 8 7.5652 -1.6286 2.2233 16 6 6.3226 -0.7859 4.0115 17 6 5.0545 -0.5058 4.5265 18 6 4.9286 0.0490 5.7807 19 6 6.0594 0.3369 6.5364 20 6 7.3265 0.0638 6.0270 21 6 7.4595 -0.4918 4.7677 22 8 8.4435 0.3359 6.7562 23 6 8.2884 1.2357 7.8590 24 6 7.0401 0.8173 8.6476 25 8 5.9109 0.8877 7.7705 26 6 4.2578 -2.9756 -1.4381 27 6 3.8368 -2.0302 -2.5650 28 6 2.9740 -3.2480 -2.2247 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 6.0785 -1.5914 -0.0305 32 1 6.0110 -3.2178 0.6897 33 1 4.4814 -1.4689 2.2955 34 1 4.1732 -0.7285 3.9434 35 1 3.9474 0.2612 6.1789 36 1 8.4417 -0.7027 4.3711 37 1 8.1653 2.2535 7.4887 38 1 9.1656 1.1819 8.5037 39 1 6.8938 1.4934 9.4900 40 1 7.1595 -0.2030 9.0118 41 1 5.1094 -3.6305 -1.6223 42 1 3.4565 -1.0486 -2.2827 43 1 4.4112 -2.0633 -3.4908 44 1 2.9813 -4.0818 -2.9266 45 1 2.0257 -3.0681 -1.7182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566733199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:03 Heat of formation + Delta-G solvation = -34.475751 kcal Electronic energy + Delta-G solvation = -28288.331783 eV Core-core repulsion = 24273.120458 eV Total energy + Delta-G solvation = -4015.211325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52764 -39.74617 -37.92549 -37.55257 -37.20141 -34.64781 -33.33275 -31.78704 -31.04666 -30.89486 -29.28621 -28.12333 -25.36118 -24.05102 -23.00737 -22.44634 -21.92280 -21.45494 -20.15844 -19.38565 -18.97697 -18.08602 -17.51688 -17.46342 -16.48546 -15.81980 -15.65544 -15.40913 -15.26010 -14.88945 -14.70176 -14.50939 -14.26521 -14.06952 -14.02488 -13.57034 -13.51230 -13.15159 -12.82589 -12.70202 -12.49584 -12.02832 -11.65210 -11.41930 -11.30187 -11.21934 -10.98800 -10.82075 -10.77232 -10.59277 -10.25103 -9.87720 -9.59625 -9.53963 -9.23121 -9.04703 -8.91242 -8.77532 -8.30719 -7.40589 -5.86121 -3.23316 0.68997 1.12516 2.61203 2.85295 2.92006 3.30832 3.35417 3.41013 3.46384 3.76400 3.85232 4.32399 4.42899 4.50028 4.51797 4.52539 4.80454 4.81971 4.99294 5.06430 5.11550 5.18338 5.20945 5.31810 5.40848 5.60154 5.66740 5.74534 5.84928 5.88291 5.91819 5.94745 5.99763 6.16020 6.27569 6.30009 6.36774 6.55287 6.58695 6.61113 6.77323 6.99906 7.11368 7.12680 7.77357 7.89972 8.32091 8.40407 9.09786 9.81940 10.01076 11.31367 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003155 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.798826 B = 8873.206020 C =10181.331254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.875 3.125 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.744 5.744 10 C 0.197 3.803 11 H 0.067 0.933 12 C 0.116 3.884 13 N -0.710 5.710 14 C 0.558 3.442 15 O -0.548 6.548 16 C -0.129 4.129 17 C -0.075 4.075 18 C -0.119 4.119 19 C 0.073 3.927 20 C 0.036 3.964 21 C -0.053 4.053 22 O -0.305 6.305 23 C 0.020 3.980 24 C 0.019 3.981 25 O -0.304 6.304 26 C -0.178 4.178 27 C -0.165 4.165 28 C -0.170 4.170 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -0.352 14.639 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.387 5.387 10 C 0.087 3.913 11 H 0.085 0.915 12 C -0.008 4.008 13 N -0.362 5.362 14 C 0.345 3.655 15 O -0.427 6.427 16 C -0.132 4.132 17 C -0.094 4.094 18 C -0.138 4.138 19 C 0.027 3.973 20 C -0.008 4.008 21 C -0.073 4.073 22 O -0.220 6.220 23 C -0.056 4.056 24 C -0.056 4.056 25 O -0.218 6.218 26 C -0.199 4.199 27 C -0.202 4.202 28 C -0.207 4.207 29 H 0.070 0.930 30 H 0.197 0.803 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.575 -0.570 14.370 20.476 hybrid contribution 0.182 1.511 0.248 1.542 sum 14.757 0.941 14.618 20.793 Atomic orbital electron populations 1.69688 1.05080 1.25880 1.56913 1.24628 0.95087 0.96933 1.01812 0.86704 0.79294 0.85420 0.78011 1.21079 1.21797 1.20194 1.19007 0.80260 0.94592 1.43617 0.88868 1.42866 1.04163 1.01814 1.89858 1.19972 0.89612 0.89512 0.92179 0.91534 1.21677 0.98541 0.98207 0.82408 1.45926 1.09360 1.62845 1.18064 1.18008 0.84596 0.78360 0.84496 1.90753 1.25698 1.54033 1.72220 1.19696 0.93257 1.04660 0.95577 1.21244 0.97060 0.96336 0.94717 1.20399 0.97276 1.01587 0.94501 1.19161 0.93013 0.98993 0.86127 1.18681 0.84806 1.04296 0.93045 1.20424 0.99931 0.97247 0.89673 1.86344 1.30365 1.62921 1.42381 1.23637 1.00123 0.93539 0.88275 1.23668 0.85483 1.03866 0.92594 1.86293 1.38417 1.74913 1.22210 1.22997 0.98341 1.03637 0.94968 1.22842 1.03214 0.97164 0.97020 1.22903 0.96427 0.98665 1.02703 0.92983 0.80332 0.91505 0.91164 0.75301 0.83869 0.83893 0.83476 0.90387 0.85967 0.85953 0.90267 0.89289 0.87231 0.91073 0.90849 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.97 55.49 0.78 -26.49 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 20.81 27.74 -169.99 -4.71 16.09 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 7 C -0.25 -6.07 8.64 -15.06 -0.13 -6.20 16 8 H 0.09 2.51 7.13 -52.49 -0.37 2.13 16 9 N -0.74 -15.28 2.88 -53.43 -0.15 -15.44 16 10 C 0.20 3.39 2.86 -67.93 -0.19 3.20 16 11 H 0.07 1.17 8.08 -51.94 -0.42 0.75 16 12 C 0.12 1.83 5.22 -4.04 -0.02 1.81 16 13 N -0.71 -11.15 5.34 -61.32 -0.33 -11.47 16 14 C 0.56 9.17 7.77 -12.43 -0.10 9.07 16 15 O -0.55 -10.41 16.34 5.29 0.09 -10.32 16 16 C -0.13 -1.86 5.87 -104.99 -0.62 -2.48 16 17 C -0.07 -0.97 9.53 -39.22 -0.37 -1.35 16 18 C -0.12 -1.46 9.94 -39.48 -0.39 -1.85 16 19 C 0.07 0.90 6.51 -38.91 -0.25 0.65 16 20 C 0.04 0.47 6.48 -39.18 -0.25 0.22 16 21 C -0.05 -0.74 9.50 -39.03 -0.37 -1.12 16 22 O -0.31 -3.48 10.42 -32.97 -0.34 -3.83 16 23 C 0.02 0.14 7.26 37.40 0.27 0.41 16 24 C 0.02 0.13 7.26 37.40 0.27 0.40 16 25 O -0.30 -3.32 10.41 -32.38 -0.34 -3.66 16 26 C -0.18 -2.93 5.71 -90.62 -0.52 -3.44 16 27 C -0.17 -2.94 9.74 -26.69 -0.26 -3.20 16 28 C -0.17 -2.98 9.87 -26.69 -0.26 -3.24 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.36 7.68 5.66 -40.82 -0.23 7.45 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.41 6.27 6.16 -40.82 -0.25 6.02 16 34 H 0.14 1.75 6.39 -52.49 -0.34 1.41 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.11 2.27 6.68 -51.93 -0.35 1.92 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.11 2.23 6.22 -51.93 -0.32 1.90 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -31.41 369.05 -8.83 -40.24 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.08 Total: 16.21 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.30 Total: -6.89 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.29 Total: -53.41 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.59 Total: -17.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.41 -8.83 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566733199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.760 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds