Wall clock time and date at job start Tue Mar 31 2020 16:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00398 * 2 1 4 4 C 1.38641 * 119.95890 * 359.97438 * 3 2 1 5 5 C 1.38019 * 120.13628 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.05496 * 359.97438 * 5 4 3 7 7 C 1.48437 * 120.03669 * 179.97438 * 6 5 4 8 8 N 1.34057 * 126.67838 * 179.68530 * 7 6 5 9 9 N 1.28982 * 107.26560 * 179.87336 * 8 7 6 10 10 N 1.28728 * 108.94964 * 0.39768 * 9 8 7 11 11 H 0.96998 * 125.34193 * 179.78519 * 10 9 8 12 12 N 1.28864 * 109.32123 * 359.74823 * 10 9 8 13 13 C 1.39291 * 119.92809 * 359.68840 * 6 5 4 14 14 C 1.38485 * 119.86406 * 0.60440 * 13 6 5 15 15 N 1.40178 * 120.03152 * 179.68176 * 14 13 6 16 16 C 1.34784 * 119.99646 * 34.67599 * 15 14 13 17 17 O 1.21592 * 120.00002 * 355.53157 * 16 15 14 18 18 N 1.34775 * 120.00011 * 175.52734 * 16 15 14 19 19 C 1.46496 * 120.00357 * 179.97438 * 18 16 15 20 20 H 1.09006 * 109.46962 * 35.00099 * 19 18 16 21 21 C 1.53000 * 109.47264 * 275.00462 * 19 18 16 22 22 C 1.50700 * 109.47181 * 155.00240 * 19 18 16 23 23 H 1.07997 * 120.00207 * 359.97438 * 22 19 18 24 24 C 1.37881 * 119.99795 * 180.02562 * 22 19 18 25 25 N 1.31515 * 119.99835 * 0.02562 * 24 22 19 26 26 Si 1.86794 * 119.99992 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46962 * 89.99997 * 26 24 22 28 28 H 1.48501 * 109.47158 * 210.00075 * 26 24 22 29 29 H 1.48500 * 109.47424 * 330.00146 * 26 24 22 30 30 H 1.09000 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46580 * 299.99566 * 1 2 3 32 32 H 1.08994 * 109.47110 * 59.99809 * 1 2 3 33 33 H 1.07996 * 119.93569 * 0.02562 * 4 3 2 34 34 H 1.07989 * 119.97568 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.07088 * 180.29798 * 13 6 5 36 36 H 0.97001 * 120.00559 * 214.67337 * 15 14 13 37 37 H 0.97006 * 120.00005 * 0.02562 * 18 16 15 38 38 H 1.08999 * 109.47094 * 179.97438 * 21 19 18 39 39 H 1.09001 * 109.47165 * 59.99334 * 21 19 18 40 40 H 1.09001 * 109.47188 * 300.00029 * 21 19 18 41 41 H 0.97005 * 120.00163 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2904 2.3735 -0.0005 5 6 1.9133 3.6052 -0.0011 6 6 3.3045 3.6836 -0.0005 7 6 3.9740 5.0085 -0.0017 8 7 5.2947 5.2383 0.0046 9 7 5.4607 6.5173 -0.0018 10 7 4.3071 7.0886 -0.0033 11 1 4.1555 8.0467 -0.0048 12 7 3.3854 6.1881 -0.0032 13 6 4.0663 2.5175 0.0071 14 6 3.4381 1.2834 0.0015 15 7 4.2014 0.1076 0.0024 16 6 5.3704 0.0637 0.6718 17 8 5.8028 1.0664 1.2067 18 7 6.0601 -1.0917 0.7484 19 6 7.3310 -1.1394 1.4755 20 1 7.2821 -0.4731 2.3367 21 6 8.4651 -0.6941 0.5500 22 6 7.5889 -2.5482 1.9442 23 1 6.8772 -3.3298 1.7231 24 6 8.7332 -2.8392 2.6564 25 7 9.5992 -1.8871 2.9270 26 14 9.0526 -4.5852 3.2381 27 1 9.8116 -5.3229 2.1965 28 1 9.8423 -4.5515 4.4953 29 1 7.7580 -5.2695 3.4850 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2120 2.3151 -0.0005 34 1 1.3220 4.5088 -0.0019 35 1 5.1447 2.5757 0.0124 36 1 3.8883 -0.6743 -0.4787 37 1 5.7153 -1.8916 0.3213 38 1 9.4106 -0.7292 1.0912 39 1 8.2785 0.3248 0.2109 40 1 8.5140 -1.3604 -0.3113 41 1 10.4044 -2.0918 3.4277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591568120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:40 Heat of formation + Delta-G solvation = 65.285588 kcal Electronic energy + Delta-G solvation = -27698.696163 eV Core-core repulsion = 23616.563221 eV Total energy + Delta-G solvation = -4082.132941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.43666 -41.83073 -40.50658 -38.55945 -36.94107 -35.81753 -35.29299 -34.39402 -34.06352 -31.54657 -31.01695 -29.81143 -28.14766 -27.30942 -25.74642 -25.15818 -24.29688 -22.86825 -22.28753 -21.50020 -20.33294 -19.71374 -19.22786 -18.35086 -18.12261 -17.85393 -17.11872 -16.90139 -16.65422 -16.26011 -16.17421 -15.52211 -15.23614 -15.11920 -14.91191 -14.53403 -14.36682 -13.94222 -13.71398 -13.66873 -13.21346 -12.98818 -12.87250 -12.86749 -12.68819 -12.54155 -12.30717 -12.26442 -12.23900 -12.11820 -12.05897 -11.63553 -11.22501 -11.07059 -10.97383 -10.57686 -9.85710 -9.50695 -8.77080 -8.14874 -6.32304 -0.28122 0.18645 0.28375 1.27933 1.44915 1.46596 1.47976 1.58217 1.77247 2.22395 2.28188 2.44182 2.69690 2.80682 3.15379 3.19752 3.47889 3.88316 3.99085 4.18997 4.24113 4.41145 4.46619 4.53273 4.53625 4.76172 4.82730 4.86152 4.97030 5.00490 5.12718 5.17877 5.38545 5.42236 5.48047 5.62111 5.65782 5.68263 5.74545 5.87128 6.11967 6.27583 6.39547 6.75534 7.14894 7.26208 7.36352 7.72005 8.91801 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.003142 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.562001 B = 8908.249915 C =11032.364506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.127 3.873 4 C -0.180 4.180 5 C -0.045 4.045 6 C -0.058 4.058 7 C 0.217 3.783 8 N -0.308 5.308 9 N -0.062 5.062 10 N -0.198 5.198 11 H 0.495 0.505 12 N -0.286 5.286 13 C -0.065 4.065 14 C 0.118 3.882 15 N -0.669 5.669 16 C 0.692 3.308 17 O -0.622 6.622 18 N -0.714 5.714 19 C 0.290 3.710 20 H -0.002 1.002 21 C -0.134 4.134 22 C -0.546 4.546 23 H 0.075 0.925 24 C 0.013 3.987 25 N -0.918 5.918 26 Si 0.975 3.025 27 H -0.270 1.270 28 H -0.287 1.287 29 H -0.263 1.263 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.421 0.579 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.010 0.990 40 H 0.041 0.959 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.340 11.142 -9.619 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.078 3.922 4 C -0.199 4.199 5 C -0.066 4.066 6 C -0.062 4.062 7 C -0.062 4.062 8 N -0.180 5.180 9 N -0.057 5.057 10 N -0.049 5.049 11 H 0.354 0.646 12 N -0.140 5.140 13 C -0.088 4.088 14 C 0.023 3.977 15 N -0.319 5.319 16 C 0.392 3.608 17 O -0.503 6.503 18 N -0.366 5.366 19 C 0.186 3.814 20 H 0.016 0.984 21 C -0.193 4.193 22 C -0.584 4.584 23 H 0.093 0.907 24 C -0.187 4.187 25 N -0.556 5.556 26 Si 0.800 3.200 27 H -0.196 1.196 28 H -0.213 1.213 29 H -0.188 1.188 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.198 0.802 34 H 0.181 0.819 35 H 0.142 0.858 36 H 0.259 0.741 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.090 12.207 -9.009 26.798 hybrid contribution 0.116 -0.873 0.146 0.893 sum -21.973 11.334 -8.863 26.265 Atomic orbital electron populations 1.23467 0.75560 1.05874 1.02990 1.86062 1.24158 1.25659 1.88153 1.18948 0.89374 0.86489 0.97425 1.21310 1.01788 0.89620 1.07161 1.21139 0.91107 0.99265 0.95118 1.17084 0.93417 0.85540 1.10156 1.23737 0.87280 0.93739 1.01463 1.76243 1.17151 1.05515 1.19068 1.78884 1.09935 1.01476 1.15434 1.47774 1.00491 1.12935 1.43707 0.64578 1.74806 1.19186 0.97402 1.22563 1.21023 1.00919 0.90096 0.96785 1.16807 0.87623 0.85967 1.07343 1.42235 1.20713 1.14811 1.54126 1.16269 0.80677 0.84409 0.79448 1.90878 1.70720 1.35181 1.53507 1.45419 1.24232 1.09623 1.57330 1.18244 0.78189 0.95988 0.88965 0.98375 1.21923 1.01995 0.96406 0.98980 1.21530 1.06725 0.93975 1.36169 0.90730 1.25822 0.95419 1.01863 0.95561 1.70072 1.11433 1.34308 1.39774 0.85299 0.78418 0.78773 0.77542 1.19574 1.21292 1.18767 0.86525 0.91268 0.90394 0.80181 0.81938 0.85793 0.74114 0.76189 0.91415 0.97105 0.94039 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.51 10.04 -92.95 -0.93 -7.44 16 3 C 0.13 2.97 6.71 22.64 0.15 3.12 16 4 C -0.18 -3.09 9.02 22.31 0.20 -2.89 16 5 C -0.05 -0.91 9.69 22.48 0.22 -0.69 16 6 C -0.06 -1.66 5.88 -20.04 -0.12 -1.78 16 7 C 0.22 6.40 7.93 137.36 1.09 7.49 16 8 N -0.31 -10.56 12.23 -52.18 -0.64 -11.20 16 9 N -0.06 -1.68 13.47 37.02 0.50 -1.18 16 10 N -0.20 -3.51 7.90 37.02 0.29 -3.22 16 11 H 0.49 3.02 8.96 -347.54 -3.12 -0.10 16 12 N -0.29 -6.31 12.07 -52.13 -0.63 -6.94 16 13 C -0.07 -2.30 8.35 22.58 0.19 -2.11 16 14 C 0.12 3.75 6.32 38.14 0.24 3.99 16 15 N -0.67 -22.34 5.19 -316.88 -1.65 -23.99 16 16 C 0.69 30.30 8.38 179.05 1.50 31.80 16 17 O -0.62 -32.99 13.42 -4.01 -0.05 -33.05 16 18 N -0.71 -31.31 5.07 -461.40 -2.34 -33.65 16 19 C 0.29 15.66 2.56 44.25 0.11 15.77 16 20 H 0.00 -0.11 7.58 -2.38 -0.02 -0.12 16 21 C -0.13 -7.12 9.26 71.98 0.67 -6.46 16 22 C -0.55 -29.55 8.73 25.60 0.22 -29.33 16 23 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 24 C 0.01 0.73 5.30 84.66 0.45 1.18 16 25 N -0.92 -53.89 11.32 21.45 0.24 -53.64 16 26 Si 0.98 42.68 29.54 68.60 2.03 44.71 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.51 7.66 -2.39 -0.02 0.50 16 32 H 0.08 0.43 7.65 -2.39 -0.02 0.41 16 33 H 0.18 1.51 6.28 -2.91 -0.02 1.49 16 34 H 0.16 2.28 7.87 -2.92 -0.02 2.26 16 35 H 0.12 5.43 6.01 -2.91 -0.02 5.42 16 36 H 0.42 11.13 8.58 -92.71 -0.80 10.34 16 37 H 0.40 14.70 8.56 -92.70 -0.79 13.91 16 38 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -81.44 355.20 -0.71 -82.15 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -3.56 Total: 26.08 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.04 Total: 21.37 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -4.22 Total: -133.82 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.99 Total: -40.49 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -81.44 -0.71 -82.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591568120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.435 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds