Wall clock time and date at job start Tue Mar 31 2020 16:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47111 * 2 1 4 4 C 1.46898 * 111.00096 * 195.89171 * 3 2 1 5 5 C 1.50700 * 109.47177 * 66.04560 * 4 3 2 6 6 H 1.08003 * 120.00212 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00030 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47143 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47488 * 119.99684 * 9 7 5 12 12 H 1.48508 * 109.46826 * 239.99417 * 9 7 5 13 13 C 1.46898 * 110.99875 * 71.93897 * 3 2 1 14 14 C 1.50701 * 109.47003 * 186.75502 * 13 3 2 15 15 C 1.38346 * 119.88102 * 253.25643 * 14 13 3 16 16 C 1.38006 * 120.11869 * 179.97438 * 15 14 13 17 17 C 1.39323 * 119.87997 * 0.02562 * 16 15 14 18 18 C 1.48464 * 120.11384 * 179.97438 * 17 16 15 19 19 N 1.34054 * 126.66996 * 179.68684 * 18 17 16 20 20 N 1.28981 * 107.26185 * 179.83465 * 19 18 17 21 21 N 1.28729 * 108.94784 * 0.43065 * 20 19 18 22 22 H 0.97003 * 125.34246 * 179.74866 * 21 20 19 23 23 N 1.28872 * 109.31597 * 359.72561 * 21 20 19 24 24 C 1.39285 * 119.76661 * 359.97438 * 17 16 15 25 25 C 1.38050 * 119.87807 * 359.75192 * 24 17 16 26 26 N 1.48018 * 119.93938 * 180.25374 * 25 24 17 27 27 O 1.21802 * 119.99750 * 5.80260 * 26 25 24 28 28 O 1.21797 * 120.00148 * 185.80349 * 26 25 24 29 29 H 1.09004 * 109.47517 * 174.44193 * 1 2 3 30 30 H 1.09000 * 109.47083 * 294.44253 * 1 2 3 31 31 H 1.09004 * 109.47385 * 54.44287 * 1 2 3 32 32 H 1.09003 * 109.46808 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.47213 * 119.99918 * 2 1 3 34 34 H 1.08999 * 109.47761 * 186.04731 * 4 3 2 35 35 H 1.09001 * 109.47340 * 306.04947 * 4 3 2 36 36 H 0.97004 * 120.00238 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47299 * 306.75047 * 13 3 2 38 38 H 1.09000 * 109.47274 * 66.75473 * 13 3 2 39 39 H 1.08004 * 119.93660 * 359.95369 * 15 14 13 40 40 H 1.08002 * 120.05886 * 179.97438 * 16 15 14 41 41 H 1.07988 * 120.05669 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4387 1.4417 -0.3755 5 6 3.5967 1.0055 -1.8093 6 1 2.7296 0.7156 -2.3843 7 6 4.8482 0.9766 -2.3872 8 7 5.9040 1.3300 -1.6873 9 14 5.0439 0.4366 -4.1648 10 1 3.7132 0.0933 -4.7272 11 1 5.6454 1.5411 -4.9543 12 1 5.9289 -0.7544 -4.2257 13 6 1.7942 2.0230 1.3039 14 6 2.1543 3.4838 1.2172 15 6 3.3122 3.9451 1.8175 16 6 3.6468 5.2818 1.7407 17 6 2.8160 6.1672 1.0576 18 6 3.1707 7.6063 0.9722 19 7 2.4747 8.5667 0.3476 20 7 3.1172 9.6731 0.5113 21 7 4.1806 9.4411 1.1987 22 1 4.8382 10.1059 1.4566 23 7 4.2341 8.1871 1.4911 24 6 1.6514 5.6975 0.4550 25 6 1.3290 4.3574 0.5330 26 7 0.0946 3.8558 -0.1117 27 8 -0.5801 4.6019 -0.7985 28 8 -0.2465 2.6971 0.0447 29 1 -0.3634 -1.0228 -0.0995 30 1 -0.3633 0.4252 0.9356 31 1 -0.3634 0.5976 -0.8361 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8036 2.4627 -0.2640 35 1 4.0125 0.7781 0.2714 36 1 6.7844 1.3100 -2.0940 37 1 0.7447 1.9233 1.5806 38 1 2.4162 1.5396 2.0573 39 1 3.9551 3.2579 2.3475 40 1 4.5508 5.6409 2.2101 41 1 1.0037 6.3797 -0.0754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604289237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:24 Heat of formation + Delta-G solvation = 161.655280 kcal Electronic energy + Delta-G solvation = -28741.330428 eV Core-core repulsion = 24663.376390 eV Total energy + Delta-G solvation = -4077.954038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.70462 -41.74339 -39.53848 -37.11213 -35.86663 -34.67856 -33.96546 -32.68355 -31.80746 -31.65409 -29.63489 -27.74942 -26.26186 -25.26974 -24.81256 -23.45334 -22.39500 -22.32962 -21.57239 -19.87134 -19.52892 -18.52818 -18.04342 -17.38818 -16.97620 -16.51670 -16.24239 -15.63022 -15.29689 -14.69864 -14.46907 -14.33991 -14.02245 -13.62829 -13.37581 -13.16388 -12.61398 -12.57053 -12.15085 -12.07097 -11.82786 -11.62084 -11.50219 -11.36319 -11.25657 -11.05954 -10.97379 -10.79418 -10.71249 -10.53627 -10.45312 -10.24935 -10.04234 -9.83821 -9.48114 -9.20751 -8.83632 -8.47410 -7.29224 -6.08056 -4.08046 0.15854 0.49218 0.94058 1.64903 1.82049 2.01571 2.13504 3.28780 3.35376 3.36722 3.41411 3.43319 3.91390 4.40072 4.51508 4.53459 4.71782 4.86386 5.01055 5.10014 5.23375 5.24675 5.29109 5.56857 5.62497 5.78222 5.87556 5.95635 6.01823 6.10990 6.16420 6.19982 6.29745 6.31092 6.53454 6.83009 6.89261 7.06928 7.21546 7.29029 7.76633 7.88728 8.01305 8.15391 8.25917 8.48530 9.00327 9.56495 11.02824 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.004256 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.895233 B = 6577.569056 C = 8052.666028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.064 3.936 3 N -0.522 5.522 4 C 0.187 3.813 5 C -0.505 4.505 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.072 3.928 14 C 0.026 3.974 15 C -0.110 4.110 16 C -0.031 4.031 17 C -0.030 4.030 18 C 0.226 3.774 19 N -0.264 5.264 20 N -0.047 5.047 21 N -0.227 5.227 22 H 0.476 0.524 23 N -0.289 5.289 24 C -0.018 4.018 25 C -0.026 4.026 26 N 0.036 4.964 27 O -0.199 6.199 28 O -0.103 6.103 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.029 0.971 35 H -0.008 1.008 36 H 0.260 0.740 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 11.402 11.562 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 N -0.247 5.247 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.056 4.056 14 C 0.023 3.977 15 C -0.129 4.129 16 C -0.051 4.051 17 C -0.034 4.034 18 C -0.054 4.054 19 N -0.137 5.137 20 N -0.042 5.042 21 N -0.073 5.073 22 H 0.331 0.669 23 N -0.141 5.141 24 C -0.039 4.039 25 C -0.109 4.109 26 N 0.557 4.443 27 O -0.403 6.403 28 O -0.331 6.331 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.010 0.990 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.225 12.661 11.250 17.242 hybrid contribution 1.230 -0.691 -0.353 1.455 sum -1.994 11.970 10.898 16.310 Atomic orbital electron populations 1.21765 0.95675 0.99674 1.02549 1.21922 0.94871 0.88859 1.00750 1.62166 1.22345 1.17129 1.23099 1.19846 0.81054 0.96741 0.96203 1.21198 0.92910 1.43743 0.96500 0.91666 1.24955 0.95842 0.95552 0.98108 1.69953 0.98600 1.48746 1.36581 0.86483 0.78274 0.78182 0.84814 1.19485 1.21101 1.21055 1.21449 1.02601 0.87717 0.93818 1.20090 0.91214 0.96908 0.89439 1.21114 0.95580 0.95429 1.00815 1.21476 0.97743 0.92448 0.93416 1.16822 0.96388 0.86188 1.04001 1.23351 0.89237 0.96002 0.96772 1.76140 1.23775 0.94658 1.19091 1.78926 0.95476 1.20367 1.09426 1.47723 1.18680 1.06702 1.34148 0.66938 1.74915 1.22979 0.92779 1.23413 1.20823 0.95271 0.93468 0.94330 1.20594 0.90628 0.93982 1.05745 1.43287 1.01236 1.00624 0.99200 1.94510 1.52745 1.55374 1.37702 1.94541 1.73780 1.00979 1.63831 0.93943 0.93404 0.91196 0.89627 0.96490 0.95314 0.99036 0.93056 0.87788 0.94328 0.83036 0.83404 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.49 37.16 0.32 -1.91 16 2 C 0.06 1.20 5.53 -3.83 -0.02 1.18 16 3 N -0.52 -10.74 3.50 -237.52 -0.83 -11.57 16 4 C 0.19 4.61 4.58 -4.98 -0.02 4.58 16 5 C -0.50 -13.94 8.28 -34.44 -0.29 -14.22 16 6 H 0.07 1.82 7.26 -52.48 -0.38 1.44 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.07 1.21 4.01 -4.98 -0.02 1.19 16 14 C 0.03 0.42 4.25 -104.56 -0.44 -0.02 16 15 C -0.11 -1.52 8.92 -39.63 -0.35 -1.87 16 16 C -0.03 -0.38 9.70 -39.26 -0.38 -0.76 16 17 C -0.03 -0.40 5.88 -104.89 -0.62 -1.02 16 18 C 0.23 2.95 7.94 -156.30 -1.24 1.71 16 19 N -0.26 -3.57 12.23 32.16 0.39 -3.18 16 20 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 21 N -0.23 -1.85 7.90 60.35 0.48 -1.37 16 22 H 0.48 1.43 8.96 -340.36 -3.05 -1.62 16 23 N -0.29 -3.14 12.08 32.17 0.39 -2.75 16 24 C -0.02 -0.27 9.21 -39.26 -0.36 -0.63 16 25 C -0.03 -0.43 6.83 -80.00 -0.55 -0.98 16 26 N 0.04 0.67 4.45 33.94 0.15 0.82 16 27 O -0.20 -3.79 18.46 -29.46 -0.54 -4.33 16 28 O -0.10 -1.91 11.48 -29.46 -0.34 -2.25 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 6.48 -51.93 -0.34 0.37 16 31 H 0.07 1.23 7.05 -51.93 -0.37 0.87 16 32 H 0.09 1.80 6.59 -51.93 -0.34 1.46 16 33 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 34 H 0.03 0.75 6.32 -51.93 -0.33 0.42 16 35 H -0.01 -0.21 8.12 -51.93 -0.42 -0.64 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.10 1.63 4.83 -51.93 -0.25 1.38 16 38 H 0.04 0.60 7.93 -51.93 -0.41 0.19 16 39 H 0.15 1.83 7.98 -52.48 -0.42 1.41 16 40 H 0.15 1.50 7.88 -52.49 -0.41 1.08 16 41 H 0.16 2.33 7.45 -52.49 -0.39 1.94 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -33.13 348.15 -9.69 -42.82 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.09 Total: -3.84 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -4.07 Total: -11.28 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 2.13 Total: -43.05 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.88 Total: -6.58 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.13 -9.69 -42.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604289237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.478 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds