Wall clock time and date at job start Tue Mar 31 2020 16:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47111 * 2 1 4 4 C 1.46898 * 111.00096 * 195.89171 * 3 2 1 5 5 C 1.50700 * 109.47177 * 66.04560 * 4 3 2 6 6 H 1.08003 * 120.00212 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00030 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47143 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47488 * 119.99684 * 9 7 5 12 12 H 1.48508 * 109.46826 * 239.99417 * 9 7 5 13 13 C 1.46898 * 110.99875 * 71.93897 * 3 2 1 14 14 C 1.50701 * 109.47003 * 186.75502 * 13 3 2 15 15 C 1.38346 * 119.88102 * 253.25643 * 14 13 3 16 16 C 1.38006 * 120.11869 * 179.97438 * 15 14 13 17 17 C 1.39323 * 119.87997 * 0.02562 * 16 15 14 18 18 C 1.48464 * 120.11384 * 179.97438 * 17 16 15 19 19 N 1.34054 * 126.66996 * 179.68684 * 18 17 16 20 20 N 1.28981 * 107.26185 * 179.83465 * 19 18 17 21 21 N 1.28729 * 108.94784 * 0.43065 * 20 19 18 22 22 H 0.97003 * 125.34246 * 179.74866 * 21 20 19 23 23 N 1.28872 * 109.31597 * 359.72561 * 21 20 19 24 24 C 1.39285 * 119.76661 * 359.97438 * 17 16 15 25 25 C 1.38050 * 119.87807 * 359.75192 * 24 17 16 26 26 N 1.48018 * 119.93938 * 180.25374 * 25 24 17 27 27 O 1.21802 * 119.99750 * 5.80260 * 26 25 24 28 28 O 1.21797 * 120.00148 * 185.80349 * 26 25 24 29 29 H 1.09004 * 109.47517 * 174.44193 * 1 2 3 30 30 H 1.09000 * 109.47083 * 294.44253 * 1 2 3 31 31 H 1.09004 * 109.47385 * 54.44287 * 1 2 3 32 32 H 1.09003 * 109.46808 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.47213 * 119.99918 * 2 1 3 34 34 H 1.08999 * 109.47761 * 186.04731 * 4 3 2 35 35 H 1.09001 * 109.47340 * 306.04947 * 4 3 2 36 36 H 0.97004 * 120.00238 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47299 * 306.75047 * 13 3 2 38 38 H 1.09000 * 109.47274 * 66.75473 * 13 3 2 39 39 H 1.08004 * 119.93660 * 359.95369 * 15 14 13 40 40 H 1.08002 * 120.05886 * 179.97438 * 16 15 14 41 41 H 1.07988 * 120.05669 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4387 1.4417 -0.3755 5 6 3.5967 1.0055 -1.8093 6 1 2.7296 0.7156 -2.3843 7 6 4.8482 0.9766 -2.3872 8 7 5.9040 1.3300 -1.6873 9 14 5.0439 0.4366 -4.1648 10 1 3.7132 0.0933 -4.7272 11 1 5.6454 1.5411 -4.9543 12 1 5.9289 -0.7544 -4.2257 13 6 1.7942 2.0230 1.3039 14 6 2.1543 3.4838 1.2172 15 6 3.3122 3.9451 1.8175 16 6 3.6468 5.2818 1.7407 17 6 2.8160 6.1672 1.0576 18 6 3.1707 7.6063 0.9722 19 7 2.4747 8.5667 0.3476 20 7 3.1172 9.6731 0.5113 21 7 4.1806 9.4411 1.1987 22 1 4.8382 10.1059 1.4566 23 7 4.2341 8.1871 1.4911 24 6 1.6514 5.6975 0.4550 25 6 1.3290 4.3574 0.5330 26 7 0.0946 3.8558 -0.1117 27 8 -0.5801 4.6019 -0.7985 28 8 -0.2465 2.6971 0.0447 29 1 -0.3634 -1.0228 -0.0995 30 1 -0.3633 0.4252 0.9356 31 1 -0.3634 0.5976 -0.8361 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8036 2.4627 -0.2640 35 1 4.0125 0.7781 0.2714 36 1 6.7844 1.3100 -2.0940 37 1 0.7447 1.9233 1.5806 38 1 2.4162 1.5396 2.0573 39 1 3.9551 3.2579 2.3475 40 1 4.5508 5.6409 2.2101 41 1 1.0037 6.3797 -0.0754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604289237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:23 Heat of formation + Delta-G solvation = 140.384542 kcal Electronic energy + Delta-G solvation = -28742.252796 eV Core-core repulsion = 24663.376390 eV Total energy + Delta-G solvation = -4078.876406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.59130 -43.11874 -40.74719 -38.59772 -37.32642 -35.64009 -35.02888 -34.67028 -32.97482 -32.78818 -31.18786 -29.31146 -27.67858 -26.67825 -25.74749 -24.75213 -24.02464 -23.57715 -22.77232 -21.40273 -20.45712 -19.76547 -19.38507 -18.55587 -18.39283 -18.24210 -17.43292 -16.97838 -16.49721 -16.41261 -16.04805 -15.48537 -15.33543 -15.04154 -14.57662 -14.35832 -14.17767 -13.98369 -13.55771 -13.44458 -13.18425 -12.87469 -12.70046 -12.63331 -12.61366 -12.50623 -12.32507 -12.28521 -12.20831 -12.16037 -11.91886 -11.84648 -11.61647 -11.44082 -11.16084 -10.63741 -10.56057 -9.97433 -8.92048 -8.20865 -6.27247 -1.08595 -0.60172 0.04471 0.37712 0.57201 1.05167 1.32056 1.36335 1.38903 1.51085 2.26174 2.39327 2.41456 2.95344 3.12460 3.30173 3.33929 3.53459 3.70781 3.80942 3.98951 4.10243 4.30295 4.33465 4.43533 4.52334 4.59501 4.72852 4.73405 4.91202 4.92219 4.99048 5.17967 5.18923 5.21015 5.28370 5.47952 5.54002 5.54920 5.67139 5.75081 6.09228 6.41554 6.67763 6.82478 6.89148 6.98976 7.41434 8.89433 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.004256 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.895233 B = 6577.569056 C = 8052.666028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.063 3.937 3 N -0.534 5.534 4 C 0.206 3.794 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.073 3.927 14 C 0.008 3.992 15 C -0.109 4.109 16 C -0.016 4.016 17 C -0.024 4.024 18 C 0.210 3.790 19 N -0.292 5.292 20 N -0.050 5.050 21 N -0.193 5.193 22 H 0.497 0.503 23 N -0.280 5.280 24 C -0.023 4.023 25 C -0.042 4.042 26 N 0.035 4.965 27 O -0.228 6.228 28 O -0.105 6.105 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.014 0.986 35 H -0.030 1.030 36 H 0.263 0.737 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 12.067 12.545 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.064 4.064 3 N -0.259 5.259 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.201 1.201 13 C -0.054 4.054 14 C 0.005 3.995 15 C -0.128 4.128 16 C -0.036 4.036 17 C -0.028 4.028 18 C -0.070 4.070 19 N -0.164 5.164 20 N -0.045 5.045 21 N -0.045 5.045 22 H 0.357 0.643 23 N -0.133 5.133 24 C -0.045 4.045 25 C -0.125 4.125 26 N 0.552 4.448 27 O -0.426 6.426 28 O -0.335 6.335 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.032 0.968 35 H -0.012 1.012 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.188 0.812 40 H 0.196 0.804 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.283 13.374 12.219 18.259 hybrid contribution 1.018 -0.789 -0.558 1.404 sum -1.265 12.585 11.661 17.203 Atomic orbital electron populations 1.21654 0.93318 1.00931 1.02509 1.21932 0.96680 0.87928 0.99905 1.62048 1.19520 1.18316 1.26024 1.19452 0.83251 0.94940 0.94383 1.21483 0.92670 1.43716 0.98057 0.92871 1.25680 0.95640 0.95646 1.01828 1.70034 0.98967 1.49588 1.38092 0.85569 0.78198 0.78015 0.80313 1.19419 1.20822 1.20051 1.21485 1.03658 0.88051 0.92185 1.20173 0.92261 0.96444 0.90636 1.21386 0.94743 0.96369 1.00256 1.21789 0.98073 0.91646 0.92098 1.16934 0.95719 0.86982 1.03188 1.23242 0.90074 0.95778 0.97886 1.76134 1.24892 0.95308 1.20116 1.78880 0.96079 1.19651 1.09892 1.47804 1.18145 1.06458 1.32100 0.64275 1.74868 1.22013 0.93535 1.22842 1.20867 0.96014 0.92820 0.94762 1.20721 0.90206 0.94845 1.06766 1.43551 1.01758 1.00481 0.99048 1.94494 1.53741 1.55482 1.38876 1.94502 1.74087 1.01210 1.63669 0.91627 0.91913 0.93068 0.92466 0.95291 0.96776 1.01220 0.92816 0.86699 0.92724 0.81176 0.80433 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.49 71.98 0.61 -3.32 16 2 C 0.06 2.37 5.53 86.30 0.48 2.85 16 3 N -0.53 -22.04 3.50 -905.38 -3.17 -25.21 16 4 C 0.21 10.30 4.58 85.56 0.39 10.69 16 5 C -0.52 -29.20 8.28 25.60 0.21 -28.99 16 6 H 0.05 3.04 7.26 -2.91 -0.02 3.02 16 7 C 0.01 0.59 5.46 84.66 0.46 1.05 16 8 N -0.93 -53.71 13.29 21.45 0.28 -53.43 16 9 Si 0.95 44.65 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.07 2.41 4.01 85.56 0.34 2.75 16 14 C 0.01 0.24 4.25 -19.83 -0.08 0.15 16 15 C -0.11 -2.82 8.92 22.24 0.20 -2.62 16 16 C -0.02 -0.37 9.70 22.48 0.22 -0.15 16 17 C -0.02 -0.62 5.88 -20.04 -0.12 -0.74 16 18 C 0.21 5.14 7.94 137.38 1.09 6.23 16 19 N -0.29 -7.63 12.23 -52.18 -0.64 -8.27 16 20 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 21 N -0.19 -2.65 7.90 37.02 0.29 -2.36 16 22 H 0.50 1.44 8.96 -347.53 -3.12 -1.68 16 23 N -0.28 -5.35 12.08 -52.13 -0.63 -5.98 16 24 C -0.02 -0.70 9.21 22.48 0.21 -0.50 16 25 C -0.04 -1.40 6.83 36.34 0.25 -1.15 16 26 N 0.03 1.31 4.45 -46.54 -0.21 1.10 16 27 O -0.23 -8.96 18.46 18.88 0.35 -8.61 16 28 O -0.10 -3.90 11.48 18.89 0.22 -3.68 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.75 6.48 -2.39 -0.02 1.73 16 31 H 0.05 1.79 7.05 -2.38 -0.02 1.77 16 32 H 0.06 2.45 6.59 -2.39 -0.02 2.43 16 33 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 34 H 0.01 0.75 6.32 -2.39 -0.02 0.73 16 35 H -0.03 -1.59 8.12 -2.39 -0.02 -1.61 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.12 3.49 4.83 -2.39 -0.01 3.47 16 38 H 0.05 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.17 3.73 7.98 -2.91 -0.02 3.70 16 40 H 0.18 2.98 7.88 -2.91 -0.02 2.96 16 41 H 0.16 4.74 7.45 -2.92 -0.02 4.72 16 Total: -1.00 -71.92 348.15 1.27 -70.64 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.01 Total: 3.39 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.26 Total: -13.75 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -3.57 Total: -94.66 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.57 Total: -12.29 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.92 1.27 -70.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604289237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.027 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds