Wall clock time and date at job start Tue Mar 31 2020 16:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 117.00075 * 2 1 4 4 C 1.38648 * 119.94748 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.86827 * 180.02562 * 4 3 2 6 6 C 1.38179 * 120.00122 * 0.25730 * 5 4 3 7 7 C 1.38504 * 120.32861 * 359.50545 * 6 5 4 8 8 C 1.38166 * 119.88122 * 0.49321 * 7 6 5 9 9 C 1.51363 * 109.78073 * 179.74372 * 8 7 6 10 10 H 1.09006 * 110.30295 * 101.73891 * 9 8 7 11 11 C 1.50695 * 110.30943 * 223.79427 * 9 8 7 12 12 O 1.20826 * 119.99812 * 0.02562 * 11 9 8 13 13 O 1.34225 * 120.00345 * 179.97438 * 11 9 8 14 14 C 1.45195 * 117.00163 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47131 * 180.02562 * 14 13 11 16 16 C 1.50696 * 112.99933 * 53.51954 * 15 14 13 17 17 H 1.07996 * 119.99996 * 245.39656 * 16 15 14 18 18 C 1.37879 * 119.99999 * 65.39582 * 16 15 14 19 19 N 1.31509 * 119.99762 * 6.63347 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 186.63564 * 18 16 15 21 21 H 1.48495 * 109.47533 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47063 * 120.00281 * 20 18 16 23 23 H 1.48502 * 109.47165 * 239.99647 * 20 18 16 24 24 C 1.54033 * 113.81659 * 281.53504 * 15 14 13 25 25 O 1.44179 * 85.52091 * 223.19495 * 24 15 14 26 26 C 1.44180 * 93.33557 * 24.19179 * 25 24 15 27 27 C 1.54349 * 105.16237 * 342.82030 * 9 8 7 28 28 C 1.51375 * 130.36194 * 180.18350 * 7 6 5 29 29 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47155 * 300.00325 * 1 2 3 31 31 H 1.09007 * 109.47001 * 60.00367 * 1 2 3 32 32 H 1.07995 * 120.06659 * 0.02607 * 4 3 2 33 33 H 1.07998 * 120.00177 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.83556 * 179.72378 * 6 5 4 35 35 H 1.08998 * 109.47231 * 299.99866 * 14 13 11 36 36 H 1.09000 * 109.47275 * 60.00737 * 14 13 11 37 37 H 0.97012 * 119.99649 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.86362 * 337.34036 * 24 15 14 39 39 H 1.09002 * 113.86603 * 109.04785 * 24 15 14 40 40 H 1.09005 * 113.86821 * 221.66023 * 26 25 24 41 41 H 1.08999 * 113.98459 * 89.97159 * 26 25 24 42 42 H 1.09006 * 110.82323 * 144.55206 * 27 9 8 43 43 H 1.08992 * 110.82361 * 268.10884 * 27 9 8 44 44 H 1.08995 * 110.30510 * 78.54826 * 28 7 6 45 45 H 1.09000 * 110.38690 * 316.43759 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3731 -0.0005 5 6 1.9186 3.6028 -0.0011 6 6 3.2985 3.6732 -0.0064 7 6 4.0580 2.5150 -0.0010 8 6 3.4336 1.2825 -0.0004 9 6 4.4727 0.1818 -0.0005 10 1 4.5814 -0.2357 1.0006 11 6 4.0896 -0.8991 -0.9781 12 8 3.0719 -0.7986 -1.6216 13 8 4.8795 -1.9730 -1.1349 14 6 4.4484 -2.9740 -2.0942 15 6 5.4676 -4.1144 -2.1341 16 6 5.7524 -4.6974 -0.7740 17 1 6.7358 -4.5977 -0.3389 18 6 4.7575 -5.3581 -0.0850 19 7 3.6012 -5.5940 -0.6652 20 14 5.0521 -5.9179 1.6726 21 1 6.4244 -5.5344 2.0909 22 1 4.0616 -5.2716 2.5706 23 1 4.9047 -7.3934 1.7535 24 6 6.7319 -3.7904 -2.9521 25 8 6.5912 -5.1226 -3.4853 26 6 5.1758 -5.1719 -3.2154 27 6 5.7846 0.8652 -0.4411 28 6 5.5601 2.3276 -0.0013 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2113 2.3168 -0.0005 33 1 1.3317 4.5094 -0.0019 34 1 3.7874 4.6362 -0.0114 35 1 3.4758 -3.3666 -1.7974 36 1 4.3711 -2.5206 -3.0824 37 1 2.9013 -6.0592 -0.1806 38 1 6.5889 -3.0022 -3.6913 39 1 7.6262 -3.6506 -2.3449 40 1 4.8357 -6.1278 -2.8170 41 1 4.5557 -4.8062 -4.0339 42 1 6.6402 0.4319 0.0769 43 1 5.9111 0.8007 -1.5218 44 1 5.9614 2.4874 0.9994 45 1 6.0279 3.0115 -0.7094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646888161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:01 Heat of formation + Delta-G solvation = -121.748285 kcal Electronic energy + Delta-G solvation = -29511.547469 eV Core-core repulsion = 25460.258971 eV Total energy + Delta-G solvation = -4051.288497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00873 -41.21593 -40.49120 -39.11715 -37.22750 -36.25015 -34.86964 -32.03164 -31.65634 -30.32897 -28.88443 -28.01702 -27.28607 -27.09069 -25.97026 -23.40877 -23.30274 -21.78503 -21.17096 -20.82338 -18.64985 -18.55225 -18.30334 -17.56706 -17.34157 -17.09204 -16.65676 -16.54824 -16.41866 -16.17774 -16.15478 -15.81264 -15.28121 -14.97902 -14.76354 -14.47135 -13.97238 -13.80162 -13.64714 -13.58528 -13.38259 -12.98711 -12.88648 -12.70597 -12.67697 -12.57963 -12.34342 -12.21879 -12.04933 -11.86876 -11.78164 -11.72759 -11.62371 -11.24397 -11.07846 -10.88712 -10.70836 -10.20285 -9.58503 -9.05439 -8.18579 -6.25797 0.30758 0.52202 1.38878 1.41164 1.42027 1.52512 1.97978 2.40536 2.48355 2.80026 3.00952 3.22794 3.32905 3.46939 3.81211 4.00903 4.02400 4.09961 4.14178 4.25031 4.28973 4.31036 4.32196 4.44549 4.45906 4.48897 4.54432 4.59895 4.62468 4.66577 4.77961 4.80306 4.91839 5.06168 5.12240 5.16504 5.20163 5.23481 5.39802 5.46862 5.49822 5.51230 5.59807 5.73204 5.79904 5.92350 6.23791 6.54186 6.72968 7.01505 7.39724 8.88877 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.003897 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.785820 B = 7182.662721 C = 7742.808259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.140 3.860 4 C -0.229 4.229 5 C -0.071 4.071 6 C -0.154 4.154 7 C -0.053 4.053 8 C -0.160 4.160 9 C -0.034 4.034 10 H 0.114 0.886 11 C 0.449 3.551 12 O -0.527 6.527 13 O -0.340 6.340 14 C 0.099 3.901 15 C 0.018 3.982 16 C -0.496 4.496 17 H 0.060 0.940 18 C 0.024 3.976 19 N -0.911 5.911 20 Si 0.950 3.050 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.281 1.281 24 C 0.039 3.961 25 O -0.402 6.402 26 C 0.053 3.947 27 C -0.102 4.102 28 C -0.072 4.072 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 20.571 3.067 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.245 6.245 3 C 0.094 3.906 4 C -0.247 4.247 5 C -0.088 4.088 6 C -0.172 4.172 7 C -0.053 4.053 8 C -0.161 4.161 9 C -0.052 4.052 10 H 0.132 0.868 11 C 0.292 3.708 12 O -0.416 6.416 13 O -0.256 6.256 14 C 0.025 3.975 15 C 0.018 3.982 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.176 4.176 19 N -0.550 5.550 20 Si 0.776 3.224 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.207 1.207 24 C -0.037 4.037 25 O -0.321 6.321 26 C -0.024 4.024 27 C -0.140 4.140 28 C -0.108 4.108 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.761 20.074 2.771 20.341 hybrid contribution -1.184 -1.007 0.668 1.692 sum -2.945 19.067 3.439 19.597 Atomic orbital electron populations 1.23175 0.77608 1.04264 1.02026 1.86251 1.22584 1.27731 1.87925 1.19052 0.91408 0.85114 0.95004 1.21389 1.00752 0.91984 1.10597 1.21259 0.94780 0.97293 0.95503 1.20858 0.93496 0.98043 1.04770 1.20756 0.97099 0.91514 0.95930 1.19598 0.90541 0.95698 1.10286 1.20508 0.96754 0.90106 0.97874 0.86804 1.24182 0.81366 0.82648 0.82595 1.90587 1.26004 1.78514 1.46541 1.86525 1.50392 1.29749 1.58913 1.23013 0.99964 0.86705 0.87868 1.21171 0.90852 0.90500 0.95726 1.20797 0.97409 1.34763 1.00341 0.92140 1.25604 0.94953 0.95570 1.01504 1.70008 1.05342 1.41731 1.37881 0.85609 0.78529 0.77712 0.80530 1.18598 1.21184 1.20675 1.24182 0.99942 0.84672 0.94927 1.89459 1.24750 1.32766 1.85142 1.23816 0.81695 1.01506 0.95375 1.22349 0.94228 0.95268 1.02125 1.21155 0.89612 0.95603 1.04448 0.88768 0.90876 0.92058 0.83820 0.82303 0.82728 0.93576 0.93865 0.92915 0.90184 0.89410 0.90689 0.91680 0.87230 0.91162 0.87126 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.33 -12.16 8.09 -70.80 -0.57 -12.74 16 3 C 0.14 4.51 6.16 22.54 0.14 4.65 16 4 C -0.23 -5.56 9.03 22.34 0.20 -5.36 16 5 C -0.07 -1.33 10.04 22.23 0.22 -1.11 16 6 C -0.15 -2.87 10.04 22.32 0.22 -2.65 16 7 C -0.05 -1.22 6.14 -19.60 -0.12 -1.34 16 8 C -0.16 -4.98 5.34 -19.50 -0.10 -5.08 16 9 C -0.03 -1.09 3.34 -11.62 -0.04 -1.12 16 10 H 0.11 3.59 8.14 -2.38 -0.02 3.58 16 11 C 0.45 18.99 6.93 71.23 0.49 19.48 16 12 O -0.53 -24.96 13.32 29.17 0.39 -24.57 16 13 O -0.34 -15.63 9.82 -51.37 -0.50 -16.14 16 14 C 0.10 4.82 4.67 71.98 0.34 5.15 16 15 C 0.02 0.89 0.62 -52.23 -0.03 0.86 16 16 C -0.50 -26.70 7.92 25.60 0.20 -26.49 16 17 H 0.06 3.25 7.82 -2.91 -0.02 3.22 16 18 C 0.02 1.28 5.25 84.66 0.44 1.73 16 19 N -0.91 -51.50 11.31 21.45 0.24 -51.25 16 20 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.04 1.67 8.35 72.27 0.60 2.27 16 25 O -0.40 -19.11 12.40 -148.98 -1.85 -20.95 16 26 C 0.05 2.57 7.91 72.27 0.57 3.15 16 27 C -0.10 -2.38 6.58 31.51 0.21 -2.17 16 28 C -0.07 -1.23 6.77 30.52 0.21 -1.02 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 1.48 7.66 -2.39 -0.02 1.47 16 31 H 0.06 1.43 7.66 -2.38 -0.02 1.41 16 32 H 0.14 2.84 6.29 -2.91 -0.02 2.82 16 33 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.05 2.57 7.21 -2.39 -0.02 2.55 16 36 H 0.04 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 38 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 39 H 0.09 3.53 8.09 -2.39 -0.02 3.52 16 40 H 0.07 3.98 7.36 -2.38 -0.02 3.96 16 41 H 0.07 2.86 8.10 -2.39 -0.02 2.85 16 42 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.07 1.74 7.91 -2.39 -0.02 1.72 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -71.64 370.01 5.40 -66.24 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.00 Total: 21.05 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.67 Total: -7.33 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.24 Total: -51.25 kcal Atomic # 8 Polarization: -71.86 SS G_CDS: -2.54 Total: -74.39 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.64 5.40 -66.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646888161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.513 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds