Wall clock time and date at job start Tue Mar 31 2020 16:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46843 * 2 1 4 4 N 1.46499 * 109.46990 * 119.99944 * 2 1 3 5 5 C 1.34777 * 120.00087 * 275.00032 * 4 2 1 6 6 O 1.21592 * 119.99607 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00346 * 180.02562 * 5 4 2 8 8 C 1.39941 * 120.00283 * 184.51211 * 7 5 4 9 9 C 1.38958 * 120.03845 * 144.90766 * 8 7 5 10 10 C 1.38155 * 120.07125 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.13726 * 359.97438 * 10 9 8 12 12 C 1.38906 * 120.06981 * 0.02562 * 11 10 9 13 13 O 1.35758 * 120.03532 * 180.02562 * 12 11 10 14 14 C 1.34834 * 116.99976 * 5.32622 * 13 12 11 15 15 H 1.08001 * 119.99830 * 354.95752 * 14 13 12 16 16 C 1.38649 * 120.00082 * 174.96308 * 14 13 12 17 17 N 1.31550 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99722 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47488 * 60.00008 * 18 16 14 20 20 H 1.48499 * 109.47047 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47229 * 299.99790 * 18 16 14 22 22 C 1.38711 * 120.03749 * 324.88708 * 8 7 5 23 23 C 1.50702 * 109.47387 * 239.99957 * 2 1 3 24 24 N 1.31065 * 126.65785 * 284.69005 * 23 2 1 25 25 N 1.28843 * 107.99139 * 179.89425 * 24 23 2 26 26 N 1.28738 * 109.39540 * 0.37140 * 25 24 23 27 27 N 1.29019 * 108.80836 * 359.77038 * 26 25 24 28 28 C 1.46503 * 126.44020 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47342 * 300.00199 * 1 2 3 31 31 H 1.09001 * 109.46599 * 60.00003 * 1 2 3 32 32 H 0.97000 * 120.00041 * 95.00324 * 4 2 1 33 33 H 0.96998 * 120.00191 * 4.51527 * 7 5 4 34 34 H 1.08006 * 119.96376 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.93526 * 180.02562 * 10 9 8 36 36 H 1.08004 * 119.96539 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00300 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.06391 * 359.74452 * 22 8 7 39 39 H 1.08998 * 109.47151 * 270.02473 * 28 27 26 40 40 H 1.08999 * 109.47132 * 30.02344 * 28 27 26 41 41 H 1.09001 * 109.47273 * 150.02239 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1614 2.4118 7 7 2.5968 -0.6534 3.4575 8 6 2.6412 0.0185 4.6842 9 6 2.3815 -0.6690 5.8636 10 6 2.4257 -0.0065 7.0752 11 6 2.7285 1.3409 7.1184 12 6 2.9890 2.0337 5.9430 13 8 3.2870 3.3575 5.9863 14 6 3.4224 3.9149 7.2065 15 1 3.2145 3.3327 8.0922 16 6 3.8283 5.2354 7.3244 17 7 4.0819 5.9444 6.2457 18 14 4.0151 6.0077 9.0150 19 1 5.0258 5.2506 9.7962 20 1 4.4576 7.4176 8.8689 21 1 2.7108 5.9687 9.7239 22 6 2.9448 1.3713 4.7244 23 6 2.0325 -0.7104 -1.2304 24 7 2.0420 -2.0045 -1.4378 25 7 2.5454 -2.2169 -2.6046 26 7 2.8645 -1.0923 -3.1437 27 7 2.5638 -0.1395 -2.3274 28 6 2.7636 1.2944 -2.5520 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 2.8897 -1.5762 3.3991 34 1 2.1457 -1.7225 5.8332 35 1 2.2239 -0.5430 7.9905 36 1 2.7619 1.8561 8.0670 37 1 4.3662 6.8681 6.3282 38 1 3.1514 1.9068 3.8095 39 1 3.7490 1.5853 -2.1880 40 1 2.6924 1.5085 -3.6184 41 1 1.9981 1.8561 -2.0168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650503395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:28 Heat of formation + Delta-G solvation = 75.825723 kcal Electronic energy + Delta-G solvation = -27371.446570 eV Core-core repulsion = 23289.770684 eV Total energy + Delta-G solvation = -4081.675887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.39978 -41.77746 -40.47456 -38.53856 -37.21335 -36.68515 -35.55495 -34.23258 -33.60237 -31.61386 -30.92446 -29.63043 -29.37380 -27.29136 -26.00974 -24.71093 -23.98533 -23.15394 -22.51238 -21.81334 -20.03353 -19.87691 -18.97545 -18.47673 -18.30383 -17.77906 -16.77607 -16.65570 -16.52513 -16.32930 -15.88887 -15.75089 -15.45369 -15.15294 -14.85676 -14.69255 -14.50369 -14.22726 -14.20832 -13.77819 -13.54830 -13.28948 -13.21257 -13.12421 -12.92140 -12.72291 -12.61065 -12.32111 -12.26796 -12.14968 -11.97914 -11.57899 -11.35736 -11.30902 -10.92169 -10.72522 -10.45437 -9.27354 -8.82192 -8.43227 -6.11975 -0.01892 0.50095 0.76150 0.83405 0.97009 1.36945 1.47797 1.49804 1.53859 1.98461 2.20742 2.57957 2.87824 2.93113 3.19369 3.24381 3.61142 3.69319 3.90558 4.10710 4.15047 4.18561 4.19894 4.41653 4.47208 4.51895 4.54000 4.63772 4.71912 4.73991 4.79893 4.97377 5.06741 5.15132 5.15774 5.20159 5.40660 5.50502 5.69048 5.79500 5.87302 6.07560 6.25588 6.86043 7.00998 7.35796 7.40027 7.84079 8.80338 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.002449 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.349733 B =11430.424881 C =12584.199582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.253 3.747 3 H 0.119 0.881 4 N -0.720 5.720 5 C 0.706 3.294 6 O -0.602 6.602 7 N -0.664 5.664 8 C 0.201 3.799 9 C -0.204 4.204 10 C -0.049 4.049 11 C -0.257 4.257 12 C 0.126 3.874 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.105 0.895 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.020 2.980 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.256 1.256 22 C -0.208 4.208 23 C 0.179 3.821 24 N -0.307 5.307 25 N -0.103 5.103 26 N -0.098 5.098 27 N -0.287 5.287 28 C 0.056 3.944 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.416 0.584 33 H 0.427 0.573 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.272 0.728 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 -13.928 -12.370 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.144 3.856 3 H 0.137 0.863 4 N -0.378 5.378 5 C 0.406 3.594 6 O -0.480 6.480 7 N -0.313 5.313 8 C 0.106 3.894 9 C -0.225 4.225 10 C -0.068 4.068 11 C -0.277 4.277 12 C 0.075 3.925 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.123 0.877 16 C -0.222 4.222 17 N -0.562 5.562 18 Si 0.839 3.161 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.230 4.230 23 C -0.100 4.100 24 N -0.158 5.158 25 N -0.097 5.097 26 N -0.085 5.085 27 N -0.090 5.090 28 C -0.083 4.083 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.266 0.734 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.861 -13.681 -13.438 19.783 hybrid contribution 0.427 0.817 0.654 1.130 sum -4.434 -12.864 -12.784 18.670 Atomic orbital electron populations 1.22188 0.91039 1.04077 1.04185 1.19096 0.95733 0.95110 0.75680 0.86313 1.44783 1.71482 1.14474 1.07044 1.15922 0.78118 0.84586 0.80777 1.91029 1.57136 1.15563 1.84265 1.42202 1.66907 1.16878 1.05336 1.17031 0.97278 0.90018 0.85066 1.20856 1.10050 1.01620 0.89994 1.20999 0.94942 0.92122 0.98729 1.21326 1.11974 0.96913 0.97445 1.19674 0.93564 0.84486 0.94743 1.83956 1.78933 1.18592 1.32535 1.21846 1.47546 0.96529 0.82961 0.87747 1.26633 0.95675 0.95757 1.04178 1.70201 1.44978 1.09803 1.31197 0.84630 0.79774 0.77195 0.74486 1.17985 1.19827 1.18059 1.20190 1.11874 0.95248 0.95651 1.26040 1.00091 0.90176 0.93728 1.74866 1.18145 1.12505 1.10268 1.78623 1.12803 1.16347 1.01896 1.78855 1.18641 0.92482 1.18496 1.48732 1.37629 1.11844 1.10767 1.23083 1.07176 0.69627 1.08410 0.90837 0.91094 0.89180 0.74639 0.73399 0.82083 0.82477 0.86039 0.91938 0.87481 0.86768 0.85005 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.47 71.98 0.68 -1.62 16 2 C 0.25 4.19 2.86 44.25 0.13 4.31 16 3 H 0.12 1.96 6.63 -2.39 -0.02 1.94 16 4 N -0.72 -13.52 5.07 -461.40 -2.34 -15.86 16 5 C 0.71 19.34 8.37 179.06 1.50 20.83 16 6 O -0.60 -22.66 13.45 -4.01 -0.05 -22.71 16 7 N -0.66 -16.63 5.34 -317.23 -1.69 -18.33 16 8 C 0.20 6.85 6.30 38.13 0.24 7.09 16 9 C -0.20 -5.81 9.96 22.42 0.22 -5.59 16 10 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 11 C -0.26 -11.00 9.17 22.41 0.21 -10.80 16 12 C 0.13 6.50 6.64 22.56 0.15 6.65 16 13 O -0.23 -14.55 9.76 -22.87 -0.22 -14.77 16 14 C -0.41 -24.37 9.49 67.92 0.64 -23.73 16 15 H 0.11 5.57 5.20 -2.91 -0.02 5.55 16 16 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 17 N -0.92 -57.76 13.67 21.61 0.30 -57.46 16 18 Si 1.02 43.03 29.55 68.60 2.03 45.06 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 C -0.21 -9.56 8.63 22.51 0.19 -9.36 16 23 C 0.18 3.12 6.92 138.14 0.96 4.07 16 24 N -0.31 -6.79 12.08 -50.45 -0.61 -7.40 16 25 N -0.10 -2.56 13.43 37.01 0.50 -2.07 16 26 N -0.10 -2.09 13.29 37.02 0.49 -1.60 16 27 N -0.29 -4.41 3.75 -359.64 -1.35 -5.76 16 28 C 0.06 0.31 11.04 127.77 1.41 1.72 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.42 6.17 8.39 -92.71 -0.78 5.40 16 33 H 0.43 6.71 8.84 -92.71 -0.82 5.89 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.12 5.24 5.63 -2.91 -0.02 5.22 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.11 5.46 6.24 -2.91 -0.02 5.45 16 39 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.13 0.23 7.41 -2.39 -0.02 0.21 16 Total: -1.00 -87.37 358.54 3.59 -83.78 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.47 Total: 25.88 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 7.02 Total: -8.77 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.71 Total: -108.47 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.28 Total: -37.49 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -87.37 3.59 -83.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650503395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.609 kcal (2) G-P(sol) polarization free energy of solvation -87.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds