Wall clock time and date at job start Tue Mar 31 2020 16:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.52997 * 109.47212 * 89.99960 * 3 2 1 5 5 N 1.46500 * 109.47473 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00376 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99593 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00115 * 180.02562 * 6 5 4 9 9 H 1.09000 * 110.01324 * 58.60728 * 8 6 5 10 10 C 1.53876 * 110.03129 * 180.02562 * 8 6 5 11 11 C 1.54259 * 106.59841 * 119.28144 * 10 8 6 12 12 C 1.54891 * 104.19681 * 23.60871 * 11 10 8 13 13 H 1.08998 * 110.75623 * 203.73946 * 12 11 10 14 14 F 1.39902 * 110.75353 * 80.55296 * 12 11 10 15 15 C 1.54261 * 110.02823 * 297.16390 * 8 6 5 16 16 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 17 17 O 1.21291 * 119.99579 * 180.02562 * 16 2 1 18 18 C 1.50697 * 120.00055 * 0.02562 * 16 2 1 19 19 S 1.81003 * 109.46854 * 179.97438 * 18 16 2 20 20 C 1.76206 * 99.99799 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99898 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99713 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00474 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99827 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47252 * 89.99589 * 24 22 20 26 26 H 1.48498 * 109.46965 * 209.99797 * 24 22 20 27 27 H 1.48507 * 109.46994 * 329.99753 * 24 22 20 28 28 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 29 29 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 30 30 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 31 31 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 32 32 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 35 35 H 0.97004 * 119.99396 * 0.02562 * 5 4 3 36 36 H 1.09000 * 110.03136 * 238.57052 * 10 8 6 37 37 H 1.09005 * 110.03053 * 359.95171 * 10 8 6 38 38 H 1.09006 * 110.48531 * 142.28607 * 11 10 8 39 39 H 1.08994 * 110.49043 * 264.92815 * 11 10 8 40 40 H 1.09000 * 110.49167 * 335.78538 * 15 8 6 41 41 H 1.09002 * 110.48425 * 98.43133 * 15 8 6 42 42 H 1.08995 * 109.46788 * 299.99564 * 18 16 2 43 43 H 1.08992 * 109.47134 * 59.99783 * 18 16 2 44 44 H 0.96998 * 120.00127 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 7 3.1853 2.9790 1.4425 6 6 3.5228 3.5623 2.6097 7 8 3.2200 3.0368 3.6601 8 6 4.2762 4.8675 2.6097 9 1 3.7054 5.6278 2.0767 10 6 4.5410 5.3232 4.0554 11 6 6.0729 5.3975 4.2205 12 6 6.6020 5.5842 2.7768 13 1 7.6335 5.2414 2.6960 14 9 6.4930 6.9207 2.3778 15 6 5.6568 4.6805 1.9474 16 6 2.1388 -1.1672 0.0005 17 8 3.3518 -1.1670 0.0010 18 6 1.3854 -2.4723 0.0005 19 16 2.5617 -3.8479 0.0005 20 6 1.4417 -5.2082 0.0013 21 1 0.3764 -5.0305 0.0012 22 6 1.9285 -6.5080 0.0020 23 7 3.2268 -6.7246 0.0017 24 14 0.7411 -7.9501 0.0021 25 1 0.4269 -8.3327 -1.3979 26 1 1.3622 -9.1026 0.7029 27 1 -0.5099 -7.5612 0.7016 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1385 -0.5138 32 1 1.6083 2.0285 -0.5138 33 1 1.4999 1.8408 1.9563 34 1 3.0414 0.9510 1.9564 35 1 3.4277 3.3990 0.6024 36 1 4.0991 6.3053 4.2241 37 1 4.1237 4.6008 4.7570 38 1 6.3488 6.2501 4.8411 39 1 6.4556 4.4719 4.6503 40 1 5.9723 3.6390 2.0103 41 1 5.6293 5.0096 0.9086 42 1 0.7585 -2.5298 0.8903 43 1 0.7591 -2.5302 -0.8896 44 1 3.5670 -7.6329 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688369706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:13 Heat of formation + Delta-G solvation = -133.596186 kcal Electronic energy + Delta-G solvation = -25496.052716 eV Core-core repulsion = 21488.526853 eV Total energy + Delta-G solvation = -4007.525864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.97753 -40.39391 -39.52418 -37.09066 -35.96591 -34.66450 -32.44727 -31.06912 -29.59902 -28.94776 -28.11949 -26.44102 -25.50108 -23.49521 -22.08558 -21.22363 -20.15066 -19.18857 -17.96260 -17.70911 -16.87645 -16.63215 -16.33343 -16.30707 -15.73064 -15.49329 -15.22059 -15.10845 -14.81980 -14.61823 -14.08761 -13.90828 -13.58836 -13.28907 -13.18085 -12.99772 -12.59882 -12.53573 -12.42562 -12.39535 -11.88641 -11.78875 -11.70429 -11.50068 -11.31581 -11.25904 -11.07819 -11.04343 -10.90737 -10.77659 -10.06531 -9.83137 -9.47336 -9.33059 -9.08384 -8.70294 -8.25841 -6.52743 -6.23438 -3.94429 2.36587 2.57121 2.95101 3.10299 3.21156 3.26664 3.30265 3.59086 3.76968 3.89620 4.18318 4.22400 4.33029 4.62314 4.65126 4.71310 4.80786 4.90740 4.97307 5.00234 5.03839 5.05047 5.11798 5.14444 5.21276 5.28995 5.37608 5.52252 5.54564 5.63582 5.65626 5.74164 5.79716 5.83901 5.87466 5.88534 6.09434 6.12194 6.51469 7.18810 7.39371 7.57834 7.95246 8.33321 8.44979 9.21875 10.83985 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.001920 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.715429 B =14581.984516 C =15042.183252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.102 3.898 5 N -0.726 5.726 6 C 0.519 3.481 7 O -0.533 6.533 8 C -0.112 4.112 9 H 0.103 0.897 10 C -0.120 4.120 11 C -0.148 4.148 12 C 0.083 3.917 13 H 0.094 0.906 14 F -0.208 7.208 15 C -0.141 4.141 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 26.917 2.260 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.378 5.378 6 C 0.304 3.696 7 O -0.409 6.409 8 C -0.134 4.134 9 H 0.121 0.879 10 C -0.157 4.157 11 C -0.186 4.186 12 C 0.047 3.953 13 H 0.112 0.888 14 F -0.189 7.189 15 C -0.179 4.179 16 C 0.321 3.679 17 O -0.386 6.386 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.279 26.396 3.010 26.598 hybrid contribution -2.225 -0.657 -0.512 2.376 sum -0.946 25.739 2.499 25.878 Atomic orbital electron populations 1.21815 0.79222 1.03375 1.01963 1.47746 1.06986 1.05152 1.76055 1.21433 0.98873 0.85839 0.95385 1.21787 0.97012 0.85333 0.98180 1.45841 1.58767 1.24452 1.08714 1.20507 0.79073 0.86442 0.83548 1.90708 1.54240 1.64770 1.31222 1.21937 0.96726 0.95340 0.99359 0.87936 1.22173 0.95743 1.02651 0.95162 1.22981 0.96291 1.03659 0.95646 1.22446 1.00511 0.77335 0.95053 0.88769 1.92811 1.97627 1.36485 1.91986 1.22977 0.93291 1.01470 1.00158 1.20430 0.87975 0.84586 0.74866 1.90705 1.13705 1.86731 1.47417 1.23555 1.04607 0.97057 1.04848 1.85406 1.08025 0.93367 1.96717 1.22850 0.94289 0.92161 1.59025 0.90904 1.24997 0.95690 0.98399 0.94517 1.70014 1.11746 1.21693 1.46797 0.86163 0.80264 0.80702 0.78343 1.20266 1.20738 1.19678 0.92459 0.90393 0.91325 0.89148 0.90245 0.91348 0.90564 0.76541 0.90961 0.88550 0.90085 0.89440 0.88937 0.89402 0.89102 0.89140 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.84 0.61 1.37 16 2 N -0.62 -8.12 2.87 -181.57 -0.52 -8.64 16 3 C 0.11 1.13 5.52 -4.04 -0.02 1.10 16 4 C 0.10 1.13 6.00 -4.04 -0.02 1.11 16 5 N -0.73 -6.37 5.50 -60.29 -0.33 -6.70 16 6 C 0.52 5.41 6.99 -10.98 -0.08 5.33 16 7 O -0.53 -7.90 15.21 5.55 0.08 -7.81 16 8 C -0.11 -0.82 3.30 -90.66 -0.30 -1.12 16 9 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 10 C -0.12 -0.94 6.40 -25.62 -0.16 -1.10 16 11 C -0.15 -0.98 6.63 -25.07 -0.17 -1.15 16 12 C 0.08 0.53 4.70 -24.76 -0.12 0.42 16 13 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 14 F -0.21 -1.77 17.22 2.25 0.04 -1.73 16 15 C -0.14 -0.87 6.11 -25.10 -0.15 -1.02 16 16 C 0.53 9.76 7.69 -10.99 -0.08 9.68 16 17 O -0.51 -11.27 15.44 5.55 0.09 -11.19 16 18 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 24 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 30 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 32 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.40 2.25 8.47 -40.82 -0.35 1.91 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.96 6.39 -51.93 -0.33 0.63 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.62 7.85 -51.93 -0.41 0.21 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 43 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -36.71 381.82 -8.32 -45.03 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.80 Total: -0.73 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.13 Total: -1.05 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.12 Total: -40.66 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.71 -8.32 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688369706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.569 kcal (2) G-P(sol) polarization free energy of solvation -36.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds