Wall clock time and date at job start Tue Mar 31 2020 16:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.52997 * 109.47212 * 89.99960 * 3 2 1 5 5 N 1.46500 * 109.47473 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00376 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99593 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00115 * 180.02562 * 6 5 4 9 9 H 1.09000 * 110.01324 * 58.60728 * 8 6 5 10 10 C 1.53876 * 110.03129 * 180.02562 * 8 6 5 11 11 C 1.54259 * 106.59841 * 119.28144 * 10 8 6 12 12 C 1.54891 * 104.19681 * 23.60871 * 11 10 8 13 13 H 1.08998 * 110.75623 * 203.73946 * 12 11 10 14 14 F 1.39902 * 110.75353 * 80.55296 * 12 11 10 15 15 C 1.54261 * 110.02823 * 297.16390 * 8 6 5 16 16 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 17 17 O 1.21291 * 119.99579 * 180.02562 * 16 2 1 18 18 C 1.50697 * 120.00055 * 0.02562 * 16 2 1 19 19 S 1.81003 * 109.46854 * 179.97438 * 18 16 2 20 20 C 1.76206 * 99.99799 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99898 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99713 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00474 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99827 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47252 * 89.99589 * 24 22 20 26 26 H 1.48498 * 109.46965 * 209.99797 * 24 22 20 27 27 H 1.48507 * 109.46994 * 329.99753 * 24 22 20 28 28 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 29 29 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 30 30 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 31 31 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 32 32 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 35 35 H 0.97004 * 119.99396 * 0.02562 * 5 4 3 36 36 H 1.09000 * 110.03136 * 238.57052 * 10 8 6 37 37 H 1.09005 * 110.03053 * 359.95171 * 10 8 6 38 38 H 1.09006 * 110.48531 * 142.28607 * 11 10 8 39 39 H 1.08994 * 110.49043 * 264.92815 * 11 10 8 40 40 H 1.09000 * 110.49167 * 335.78538 * 15 8 6 41 41 H 1.09002 * 110.48425 * 98.43133 * 15 8 6 42 42 H 1.08995 * 109.46788 * 299.99564 * 18 16 2 43 43 H 1.08992 * 109.47134 * 59.99783 * 18 16 2 44 44 H 0.96998 * 120.00127 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 7 3.1853 2.9790 1.4425 6 6 3.5228 3.5623 2.6097 7 8 3.2200 3.0368 3.6601 8 6 4.2762 4.8675 2.6097 9 1 3.7054 5.6278 2.0767 10 6 4.5410 5.3232 4.0554 11 6 6.0729 5.3975 4.2205 12 6 6.6020 5.5842 2.7768 13 1 7.6335 5.2414 2.6960 14 9 6.4930 6.9207 2.3778 15 6 5.6568 4.6805 1.9474 16 6 2.1388 -1.1672 0.0005 17 8 3.3518 -1.1670 0.0010 18 6 1.3854 -2.4723 0.0005 19 16 2.5617 -3.8479 0.0005 20 6 1.4417 -5.2082 0.0013 21 1 0.3764 -5.0305 0.0012 22 6 1.9285 -6.5080 0.0020 23 7 3.2268 -6.7246 0.0017 24 14 0.7411 -7.9501 0.0021 25 1 0.4269 -8.3327 -1.3979 26 1 1.3622 -9.1026 0.7029 27 1 -0.5099 -7.5612 0.7016 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1385 -0.5138 32 1 1.6083 2.0285 -0.5138 33 1 1.4999 1.8408 1.9563 34 1 3.0414 0.9510 1.9564 35 1 3.4277 3.3990 0.6024 36 1 4.0991 6.3053 4.2241 37 1 4.1237 4.6008 4.7570 38 1 6.3488 6.2501 4.8411 39 1 6.4556 4.4719 4.6503 40 1 5.9723 3.6390 2.0103 41 1 5.6293 5.0096 0.9086 42 1 0.7585 -2.5298 0.8903 43 1 0.7591 -2.5302 -0.8896 44 1 3.5670 -7.6329 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688369706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:12 Heat of formation + Delta-G solvation = -159.244074 kcal Electronic energy + Delta-G solvation = -25497.164892 eV Core-core repulsion = 21488.526853 eV Total energy + Delta-G solvation = -4008.638040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.55435 -41.27903 -40.76898 -37.78927 -37.07041 -35.68741 -34.59305 -32.13998 -30.55340 -29.51601 -29.13078 -27.70459 -27.33799 -24.45495 -22.87153 -21.76967 -21.06161 -20.39148 -19.54966 -18.67690 -18.09042 -17.60255 -17.14765 -17.02501 -16.88791 -16.71508 -16.54632 -16.20165 -15.79203 -15.72186 -15.45760 -14.93080 -14.58351 -14.40182 -14.31665 -14.19565 -13.81350 -13.57780 -13.25523 -13.17459 -13.13644 -13.05247 -12.88971 -12.65254 -12.43711 -12.33435 -12.26609 -11.88253 -11.78720 -11.72824 -11.49592 -11.14897 -11.02961 -10.85229 -10.28038 -10.22021 -9.80063 -8.68458 -8.35449 -6.13879 1.23296 1.42042 1.43333 1.51106 1.54246 1.55682 1.87324 2.26300 2.39605 2.98730 3.21323 3.25435 3.35070 3.64432 3.68468 3.79452 3.83943 4.01763 4.11450 4.19693 4.21870 4.31722 4.35738 4.36536 4.43562 4.47608 4.48880 4.58852 4.69091 4.73282 4.81791 4.89025 4.95828 5.02514 5.10686 5.20093 5.30239 5.34364 5.41044 5.53320 6.18196 6.20319 6.46684 7.05784 7.09063 7.18367 8.73782 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.001920 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.715429 B =14581.984516 C =15042.183252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.112 3.888 4 C 0.112 3.888 5 N -0.711 5.711 6 C 0.516 3.484 7 O -0.583 6.583 8 C -0.105 4.105 9 H 0.127 0.873 10 C -0.123 4.123 11 C -0.148 4.148 12 C 0.082 3.918 13 H 0.111 0.889 14 F -0.218 7.218 15 C -0.137 4.137 16 C 0.530 3.470 17 O -0.561 6.561 18 C -0.124 4.124 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.258 1.258 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.419 0.581 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 28.693 1.119 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.364 5.364 6 C 0.303 3.697 7 O -0.463 6.463 8 C -0.126 4.126 9 H 0.145 0.855 10 C -0.161 4.161 11 C -0.186 4.186 12 C 0.046 3.954 13 H 0.129 0.871 14 F -0.199 7.199 15 C -0.175 4.175 16 C 0.318 3.682 17 O -0.439 6.439 18 C -0.275 4.275 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.182 1.182 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.257 0.743 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.914 28.238 1.831 28.312 hybrid contribution -1.599 -1.056 -0.135 1.921 sum -2.513 27.181 1.696 27.350 Atomic orbital electron populations 1.22157 0.76473 1.04801 1.03805 1.47725 1.08664 1.04349 1.73619 1.21621 0.99133 0.85432 0.94927 1.21526 0.96420 0.85194 0.98278 1.45692 1.57908 1.23393 1.09375 1.21105 0.78456 0.87121 0.82996 1.90693 1.56277 1.66287 1.33068 1.21976 0.97272 0.93892 0.99497 0.85506 1.22176 0.96588 1.02323 0.95017 1.22981 0.95425 1.03885 0.96264 1.22537 1.01514 0.76753 0.94563 0.87082 1.92794 1.97721 1.37321 1.92045 1.22984 0.92237 1.01089 1.01218 1.20192 0.87313 0.85605 0.75109 1.90689 1.15607 1.87462 1.50146 1.23380 1.02736 0.94953 1.06469 1.85585 1.12749 0.97427 1.97038 1.23189 0.94625 0.92587 1.58848 0.89839 1.26146 0.97617 1.01743 0.93755 1.70184 1.14123 1.22473 1.48006 0.84946 0.77871 0.76276 0.78842 1.19177 1.20398 1.18166 0.90307 0.90919 0.88128 0.90418 0.85310 0.91085 0.95139 0.74329 0.90012 0.91177 0.89374 0.89692 0.89689 0.87298 0.87567 0.87130 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.24 127.77 1.31 2.37 16 2 N -0.61 -14.67 2.87 -846.74 -2.43 -17.11 16 3 C 0.11 2.06 5.52 86.38 0.48 2.54 16 4 C 0.11 2.40 6.00 86.38 0.52 2.92 16 5 N -0.71 -11.49 5.50 -463.06 -2.55 -14.03 16 6 C 0.52 10.51 6.99 87.66 0.61 11.12 16 7 O -0.58 -17.87 15.21 -3.05 -0.05 -17.92 16 8 C -0.11 -1.39 3.30 -10.82 -0.04 -1.43 16 9 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 10 C -0.12 -1.88 6.40 31.32 0.20 -1.68 16 11 C -0.15 -1.85 6.63 31.67 0.21 -1.64 16 12 C 0.08 0.92 4.70 31.87 0.15 1.07 16 13 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 14 F -0.22 -3.25 17.22 44.97 0.77 -2.48 16 15 C -0.14 -1.44 6.11 31.65 0.19 -1.25 16 16 C 0.53 19.35 7.69 87.66 0.67 20.02 16 17 O -0.56 -25.58 15.44 -3.06 -0.05 -25.63 16 18 C -0.12 -4.90 4.71 71.23 0.34 -4.57 16 19 S -0.16 -8.64 20.57 -56.49 -1.16 -9.81 16 20 C -0.54 -31.06 9.50 67.95 0.65 -30.42 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.69 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 24 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.23 6.44 -2.38 -0.02 1.21 16 30 H 0.10 0.97 8.07 -2.39 -0.02 0.95 16 31 H 0.08 1.71 7.42 -2.39 -0.02 1.69 16 32 H 0.13 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.42 3.61 8.47 -92.71 -0.79 2.82 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.47 6.39 -2.38 -0.02 1.46 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.05 7.85 -2.39 -0.02 1.04 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 3.84 7.40 -2.40 -0.02 3.82 16 43 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -85.10 381.82 2.83 -82.27 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.22 Total: 14.79 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.76 Total: 0.22 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.69 Total: -87.00 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.09 Total: -43.55 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.77 Total: -2.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -85.10 2.83 -82.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688369706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.971 kcal (2) G-P(sol) polarization free energy of solvation -85.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds