Wall clock time and date at job start Tue Mar 31 2020 17:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48498 * 109.46901 * 269.99404 * 3 2 1 5 5 H 1.48497 * 109.47290 * 29.99763 * 3 2 1 6 6 H 1.48502 * 109.46801 * 149.99814 * 3 2 1 7 7 C 1.38807 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00495 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00041 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00077 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47013 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47579 * 64.99910 * 11 10 9 13 13 N 1.46502 * 109.46841 * 304.99972 * 11 10 9 14 14 C 1.34781 * 119.99697 * 155.00516 * 13 11 10 15 15 O 1.21586 * 120.00167 * 359.97438 * 14 13 11 16 16 C 1.47609 * 119.99922 * 180.02562 * 14 13 11 17 17 C 1.39704 * 120.09634 * 359.97438 * 16 14 13 18 18 C 1.37721 * 119.96488 * 179.77293 * 17 16 14 19 19 C 1.39017 * 120.27002 * 0.23680 * 18 17 16 20 20 C 1.39261 * 120.04234 * 359.95945 * 19 18 17 21 21 C 1.38285 * 119.96172 * 0.11282 * 20 19 18 22 22 O 1.36152 * 120.75454 * 180.21090 * 20 19 18 23 23 C 1.43169 * 116.69655 * 342.76456 * 22 20 19 24 24 C 1.53472 * 108.21631 * 46.23140 * 23 22 20 25 25 O 1.35964 * 119.23620 * 179.82538 * 19 18 17 26 26 C 1.53005 * 109.47161 * 185.00107 * 11 10 9 27 27 C 1.52992 * 117.49683 * 248.74671 * 26 11 10 28 28 C 1.53001 * 117.49830 * 180.08668 * 26 11 10 29 29 H 0.96998 * 119.99673 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99540 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47184 * 60.00041 * 10 9 7 32 32 H 1.08997 * 109.47534 * 300.00089 * 10 9 7 33 33 H 0.97000 * 120.00425 * 334.99398 * 13 11 10 34 34 H 1.08002 * 120.02133 * 0.06049 * 17 16 14 35 35 H 1.07996 * 119.86790 * 180.24706 * 18 17 16 36 36 H 1.07999 * 120.02101 * 179.91248 * 21 20 19 37 37 H 1.08997 * 109.71721 * 286.55180 * 23 22 20 38 38 H 1.08997 * 109.71602 * 165.90487 * 23 22 20 39 39 H 1.09002 * 109.70818 * 180.49220 * 24 23 22 40 40 H 1.08999 * 109.74055 * 59.89103 * 24 23 22 41 41 H 1.09002 * 115.54561 * 34.41420 * 26 11 10 42 42 H 1.08998 * 117.50204 * 359.97438 * 27 26 11 43 43 H 1.09004 * 117.50068 * 145.02146 * 27 26 11 44 44 H 1.09002 * 117.49692 * 214.98060 * 28 26 11 45 45 H 1.08997 * 117.49713 * 359.97359 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6164 -2.1914 0.0020 12 1 5.8943 -1.6972 0.9328 13 7 5.9517 -1.3243 -1.1303 14 6 7.0497 -0.5443 -1.0797 15 8 7.7617 -0.5600 -0.0942 16 6 7.3873 0.3298 -2.2202 17 6 6.5703 0.3498 -3.3533 18 6 6.8853 1.1699 -4.4140 19 6 8.0169 1.9758 -4.3648 20 6 8.8376 1.9574 -3.2398 21 6 8.5275 1.1350 -2.1721 22 8 9.9470 2.7439 -3.1743 23 6 10.4319 3.2764 -4.4117 24 6 9.2369 3.8404 -5.1923 25 8 8.3099 2.7747 -5.4252 26 6 6.3804 -3.5112 -0.1226 27 6 7.1794 -3.9824 1.0940 28 6 7.9088 -3.4438 -0.1393 29 1 -0.4849 0.8401 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.8491 -3.0431 -0.8875 32 1 3.8485 -3.0419 0.8924 33 1 5.3836 -1.3116 -1.9164 34 1 5.6897 -0.2740 -3.3957 35 1 6.2505 1.1871 -5.2875 36 1 9.1640 1.1189 -1.2998 37 1 10.9089 2.4855 -4.9906 38 1 11.1500 4.0720 -4.2134 39 1 9.5783 4.2453 -6.1450 40 1 8.7550 4.6262 -4.6106 41 1 5.9034 -4.2741 -0.7379 42 1 7.1612 -3.3520 1.9831 43 1 7.2286 -5.0555 1.2791 44 1 8.4375 -4.1627 -0.7652 45 1 8.3700 -2.4592 -0.0619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699596333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:42 Heat of formation + Delta-G solvation = -57.394343 kcal Electronic energy + Delta-G solvation = -28581.684436 eV Core-core repulsion = 24565.479286 eV Total energy + Delta-G solvation = -4016.205150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38814 -41.24610 -38.98233 -38.37154 -37.96243 -36.75017 -35.10568 -33.42302 -32.31456 -31.86969 -30.39881 -29.26667 -26.24443 -25.72354 -24.35077 -23.27821 -23.03511 -22.95425 -21.57281 -21.21508 -20.11096 -19.64157 -18.85458 -18.34688 -17.54872 -17.28044 -16.79985 -16.55182 -16.44775 -16.07183 -16.04986 -15.52902 -15.47450 -15.10899 -14.97491 -14.92657 -14.73065 -14.70451 -14.35684 -13.87397 -13.58735 -13.54052 -12.93815 -12.89172 -12.72271 -12.54391 -12.41843 -12.15016 -12.11037 -12.04942 -11.84119 -11.57632 -11.31369 -11.13420 -11.02476 -10.88095 -10.06699 -9.82521 -9.32107 -9.26055 -8.03466 -5.36438 -0.35136 0.14813 1.35069 1.37842 1.43383 1.64293 1.87380 2.04593 2.27511 2.45333 2.67164 3.01425 3.15392 3.28686 3.42892 3.55474 3.67135 3.83846 3.90640 3.97302 4.01952 4.05106 4.08717 4.15907 4.24988 4.27943 4.42102 4.50934 4.55658 4.61163 4.68148 4.84151 4.88751 4.93712 4.95395 5.05668 5.08787 5.14528 5.30132 5.33088 5.37505 5.52717 5.76565 5.77722 6.20290 6.25813 6.50441 7.06201 7.15634 7.81564 7.99591 9.17900 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.003964 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.926743 B = 7061.930826 C = 9195.820945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.228 4.228 8 H 0.066 0.934 9 N -0.757 5.757 10 C 0.153 3.847 11 C 0.175 3.825 12 H 0.067 0.933 13 N -0.702 5.702 14 C 0.562 3.438 15 O -0.568 6.568 16 C -0.144 4.144 17 C -0.075 4.075 18 C -0.121 4.121 19 C 0.074 3.926 20 C 0.034 3.966 21 C -0.066 4.066 22 O -0.323 6.323 23 C 0.013 3.987 24 C 0.012 3.988 25 O -0.313 6.313 26 C -0.164 4.164 27 C -0.164 4.164 28 C -0.183 4.183 29 H 0.258 0.742 30 H 0.363 0.637 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.411 0.589 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.891 2.728 -13.035 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.359 4.359 8 H 0.084 0.916 9 N -0.403 5.403 10 C 0.027 3.973 11 C 0.070 3.930 12 H 0.085 0.915 13 N -0.353 5.353 14 C 0.351 3.649 15 O -0.449 6.449 16 C -0.147 4.147 17 C -0.094 4.094 18 C -0.140 4.140 19 C 0.028 3.972 20 C -0.011 4.011 21 C -0.086 4.086 22 O -0.238 6.238 23 C -0.061 4.061 24 C -0.062 4.062 25 O -0.227 6.227 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.220 4.220 29 H 0.067 0.933 30 H 0.196 0.804 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.248 0.752 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.204 2.651 -12.373 27.312 hybrid contribution -0.173 1.290 -0.031 1.302 sum 24.030 3.941 -12.404 27.328 Atomic orbital electron populations 1.69853 1.06828 1.26520 1.59789 1.25319 0.95868 1.00488 1.02876 0.85620 0.78094 0.80844 0.78477 1.19483 1.22421 1.19496 1.19040 0.82351 0.93635 1.40895 0.91602 1.42717 1.02641 1.03912 1.91053 1.21047 0.87975 0.87929 1.00393 1.20669 0.93728 0.89393 0.89166 0.91468 1.45885 1.26271 1.42275 1.20878 1.18250 0.80643 0.79408 0.86563 1.90679 1.51546 1.68262 1.34422 1.19582 0.98108 1.01306 0.95752 1.21330 0.98866 0.97982 0.91180 1.20645 0.95201 0.97204 1.00914 1.19296 0.94949 0.95076 0.87895 1.18706 0.89661 0.96972 0.95788 1.20415 0.96883 0.93250 0.98028 1.86328 1.40637 1.62776 1.34053 1.24029 0.96897 1.01206 0.84014 1.24049 0.89161 0.87638 1.05380 1.86275 1.62453 1.41949 1.32030 1.22555 0.93738 0.98005 1.04083 1.22989 1.03240 1.01950 0.91952 1.23199 0.93626 1.03510 1.01690 0.93319 0.80356 0.93202 0.93735 0.75196 0.82724 0.81879 0.84560 0.89698 0.82705 0.82221 0.90169 0.85856 0.89822 0.86714 0.87942 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.89 13.97 21.65 0.30 -61.59 16 2 C -0.05 -3.11 5.50 84.86 0.47 -2.65 16 3 Si 0.94 45.98 27.74 68.60 1.90 47.89 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 6 H -0.27 -12.66 6.52 99.48 0.65 -12.01 16 7 C -0.23 -12.64 10.47 84.03 0.88 -11.76 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 9 N -0.76 -34.28 5.24 -343.45 -1.80 -36.08 16 10 C 0.15 5.44 5.80 86.38 0.50 5.94 16 11 C 0.18 5.42 2.43 44.99 0.11 5.53 16 12 H 0.07 2.41 7.33 -2.39 -0.02 2.39 16 13 N -0.70 -20.62 4.45 -445.61 -1.98 -22.60 16 14 C 0.56 17.77 7.10 86.72 0.62 18.38 16 15 O -0.57 -20.93 13.36 -3.99 -0.05 -20.98 16 16 C -0.14 -4.01 5.87 -20.10 -0.12 -4.12 16 17 C -0.07 -1.73 9.53 22.50 0.21 -1.52 16 18 C -0.12 -2.59 9.94 22.33 0.22 -2.37 16 19 C 0.07 1.68 6.51 22.70 0.15 1.82 16 20 C 0.03 0.84 6.48 22.53 0.15 0.98 16 21 C -0.07 -1.83 9.50 22.63 0.21 -1.62 16 22 O -0.32 -6.96 10.42 -83.09 -0.87 -7.82 16 23 C 0.01 0.15 7.26 72.14 0.52 0.67 16 24 C 0.01 0.13 7.26 72.14 0.52 0.65 16 25 O -0.31 -5.90 10.41 -80.95 -0.84 -6.74 16 26 C -0.16 -4.15 5.36 -10.79 -0.06 -4.21 16 27 C -0.16 -3.87 10.18 30.62 0.31 -3.56 16 28 C -0.18 -4.62 9.74 30.62 0.30 -4.32 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.36 16.43 5.20 -92.71 -0.48 15.95 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 10.78 6.62 -92.71 -0.61 10.17 16 34 H 0.16 3.02 6.39 -2.91 -0.02 3.00 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.14 3.97 7.64 -2.91 -0.02 3.95 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 2.72 8.11 -2.39 -0.02 2.70 16 42 H 0.08 2.16 8.05 -2.39 -0.02 2.15 16 43 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 2.89 5.02 -2.39 -0.01 2.88 16 Total: -1.00 -74.46 369.16 1.55 -72.91 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.12 Total: 37.16 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.00 Total: -2.15 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -3.48 Total: -120.26 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.76 Total: -35.54 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.89 kcal Total: -74.46 1.55 -72.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699596333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.517 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds