Wall clock time and date at job start Tue Mar 31 2020 17:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48495 * 109.47194 * 239.99979 * 3 2 1 5 5 H 1.48498 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46846 * 119.99957 * 3 2 1 7 7 C 1.38818 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00584 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99476 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64840 * 359.96645 * 9 7 2 11 11 C 1.54331 * 107.26934 * 181.09389 * 10 9 7 12 12 C 1.55155 * 102.94346 * 22.18715 * 11 10 9 13 13 O 1.42901 * 111.03674 * 82.58910 * 12 11 10 14 14 C 1.52997 * 111.00696 * 206.42653 * 12 11 10 15 15 N 1.46505 * 109.47212 * 173.65000 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 H 1.09005 * 110.66757 * 301.78747 * 18 16 15 20 20 C 1.54709 * 110.74856 * 65.00354 * 18 16 15 21 21 C 1.51647 * 101.92408 * 143.60741 * 20 18 16 22 22 C 1.37741 * 132.16993 * 164.60024 * 21 20 18 23 23 C 1.38346 * 119.97701 * 180.36055 * 22 21 20 24 24 C 1.38286 * 119.76797 * 359.97438 * 23 22 21 25 25 C 1.37930 * 120.35126 * 359.81336 * 24 23 22 26 26 C 1.38879 * 107.04521 * 344.61276 * 21 20 18 27 27 O 1.36140 * 111.23416 * 358.93318 * 26 21 20 28 28 C 1.47421 * 125.64515 * 180.02562 * 9 7 2 29 29 H 0.97007 * 119.99593 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.88212 * 300.50692 * 10 9 7 31 31 H 1.08992 * 109.88971 * 61.52129 * 10 9 7 32 32 H 1.09003 * 110.71714 * 263.82626 * 11 10 9 33 33 H 1.08997 * 110.72303 * 140.55619 * 11 10 9 34 34 H 0.96701 * 114.00555 * 183.20704 * 13 12 11 35 35 H 1.09002 * 109.47153 * 53.64993 * 14 12 11 36 36 H 1.09001 * 109.46832 * 293.65183 * 14 12 11 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.08998 * 110.93959 * 261.76410 * 20 18 16 39 39 H 1.08996 * 110.93989 * 25.44879 * 20 18 16 40 40 H 1.08001 * 120.01125 * 0.37265 * 22 21 20 41 41 H 1.08004 * 120.11511 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.82125 * 179.83306 * 24 23 22 43 43 H 1.08003 * 119.87767 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.36770 * 37.00163 * 28 9 7 45 45 H 1.09005 * 110.46379 * 274.72348 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0007 11 6 -0.4486 -4.0441 0.0283 12 6 0.8522 -4.6559 0.6120 13 8 0.8606 -4.5777 2.0389 14 6 1.0368 -6.1008 0.1439 15 7 2.3429 -6.5947 0.5872 16 6 2.7249 -7.8520 0.2879 17 8 1.9877 -8.5745 -0.3488 18 6 4.0686 -8.3598 0.7434 19 1 4.8696 -7.7313 0.3541 20 6 4.1317 -8.4345 2.2874 21 6 4.9620 -9.6843 2.5071 22 6 5.6215 -10.1738 3.6128 23 6 6.3242 -11.3625 3.5285 24 6 6.3608 -12.0551 2.3321 25 6 5.6975 -11.5689 1.2248 26 6 4.9859 -10.3741 1.3020 27 8 4.2551 -9.7304 0.3507 28 6 1.9333 -3.7312 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5569 -2.0518 0.8845 31 1 -0.5555 -2.0823 -0.8996 32 1 -0.6327 -4.4183 -0.9787 33 1 -1.2981 -4.2512 0.6791 34 1 1.6751 -4.9032 2.4460 35 1 0.9838 -6.1398 -0.9441 36 1 0.2496 -6.7237 0.5686 37 1 2.9324 -6.0170 1.0968 38 1 4.6310 -7.5577 2.6997 39 1 3.1348 -8.5493 2.7129 40 1 5.5898 -9.6300 4.5454 41 1 6.8425 -11.7482 4.3940 42 1 6.9114 -12.9818 2.2646 43 1 5.7308 -12.1163 0.2943 44 1 2.8332 -3.7403 0.6145 45 1 2.1670 -4.0437 -1.0183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716922413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:21 Heat of formation + Delta-G solvation = -52.332090 kcal Electronic energy + Delta-G solvation = -28137.374955 eV Core-core repulsion = 24121.389321 eV Total energy + Delta-G solvation = -4015.985634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70898 -39.80279 -38.51291 -37.52939 -35.19050 -34.34186 -33.12155 -32.14918 -30.42355 -30.35584 -29.46707 -28.10275 -25.90609 -24.76380 -23.42778 -22.63265 -21.99743 -21.00686 -20.16343 -19.92891 -18.19665 -17.86037 -17.18736 -16.94206 -16.46590 -16.20143 -15.72184 -15.22407 -14.89282 -14.67554 -14.50232 -14.28163 -13.94149 -13.78855 -13.58435 -13.53046 -13.37362 -13.18469 -12.92260 -12.48600 -12.23983 -12.10372 -11.95955 -11.76130 -11.53407 -11.16750 -11.03642 -10.90884 -10.78555 -10.40422 -10.27438 -10.17401 -9.91524 -9.78023 -9.49306 -9.27410 -9.25562 -8.62265 -8.50481 -6.87605 -5.74857 -3.08870 0.90609 1.01750 2.26221 2.39058 3.19170 3.37704 3.40670 3.41744 3.43562 3.93123 4.07503 4.38487 4.42724 4.45459 4.50326 4.62351 4.70997 4.80162 4.86241 5.02908 5.07072 5.16823 5.27971 5.29648 5.31381 5.47248 5.59914 5.64269 5.75925 5.88271 5.94237 6.02413 6.10905 6.12244 6.14776 6.22323 6.30030 6.38510 6.48959 6.54776 6.80152 7.19504 7.49342 7.60109 7.79865 7.90097 7.95025 8.21719 9.17019 9.77194 10.42046 11.36696 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002307 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.361632 B =12131.724962 C =12768.355864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.102 3.898 13 O -0.535 6.535 14 C 0.105 3.895 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.516 6.516 18 C 0.064 3.936 19 H 0.117 0.883 20 C -0.100 4.100 21 C -0.174 4.174 22 C -0.067 4.067 23 C -0.150 4.150 24 C -0.084 4.084 25 C -0.136 4.136 26 C 0.107 3.893 27 O -0.274 6.274 28 C 0.117 3.883 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.362 0.638 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.037 0.963 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 -21.211 6.584 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.166 4.166 12 C 0.060 3.940 13 O -0.339 6.339 14 C -0.019 4.019 15 N -0.373 5.373 16 C 0.303 3.697 17 O -0.390 6.390 18 C 0.004 3.996 19 H 0.134 0.866 20 C -0.137 4.137 21 C -0.175 4.175 22 C -0.085 4.085 23 C -0.168 4.168 24 C -0.102 4.102 25 C -0.155 4.155 26 C 0.061 3.939 27 O -0.186 6.186 28 C -0.010 4.010 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.208 0.792 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.056 0.944 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.859 -21.304 5.775 24.175 hybrid contribution 1.335 1.058 0.378 1.745 sum 11.193 -20.246 6.153 23.938 Atomic orbital electron populations 1.69947 1.04899 1.25253 1.56548 1.24813 0.95733 0.97715 1.02016 0.86186 0.78452 0.83145 0.77856 1.21163 1.21549 1.21164 1.18965 0.90300 0.82334 1.44447 0.90572 1.44330 1.01633 0.99411 1.87032 1.21147 0.84228 0.87639 1.01336 1.22913 0.94756 0.99669 0.99309 1.22728 0.99427 0.90610 0.81285 1.86661 1.41710 1.87310 1.18234 1.22119 0.83693 0.95199 1.00872 1.45837 1.20483 1.13465 1.57533 1.19932 0.87308 0.82119 0.80367 1.90765 1.53909 1.55988 1.38325 1.23205 0.97176 0.83957 0.95282 0.86600 1.21767 1.01366 0.97285 0.93306 1.20702 1.03100 0.98973 0.94701 1.20330 0.95441 0.95696 0.97050 1.21058 1.01803 0.95670 0.98283 1.20903 0.97862 0.99472 0.92005 1.20285 0.99464 0.95356 1.00400 1.19645 0.92146 0.94462 0.87619 1.86962 1.67432 1.21179 1.43063 1.22129 0.94095 0.87486 0.97306 0.93605 0.93115 0.93694 0.90837 0.90861 0.79178 0.90076 0.90496 0.76468 0.87737 0.88395 0.85524 0.85361 0.85046 0.85243 0.94436 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.34 10.28 -15.05 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.81 3.39 -170.08 -0.58 -15.38 16 10 C 0.18 4.34 5.38 -3.06 -0.02 4.33 16 11 C -0.13 -2.33 6.16 -24.89 -0.15 -2.48 16 12 C 0.10 1.63 0.95 -88.48 -0.08 1.55 16 13 O -0.54 -8.64 13.19 -35.23 -0.46 -9.10 16 14 C 0.10 1.41 4.89 -4.04 -0.02 1.39 16 15 N -0.72 -7.91 5.16 -60.29 -0.31 -8.22 16 16 C 0.52 6.58 7.13 -10.99 -0.08 6.50 16 17 O -0.52 -8.88 16.57 -13.50 -0.22 -9.10 16 18 C 0.06 0.65 4.05 -26.98 -0.11 0.54 16 19 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.10 -0.80 6.63 -26.52 -0.18 -0.98 16 21 C -0.17 -1.63 6.27 -104.10 -0.65 -2.28 16 22 C -0.07 -0.52 10.03 -39.72 -0.40 -0.92 16 23 C -0.15 -1.04 10.07 -39.52 -0.40 -1.44 16 24 C -0.08 -0.61 10.02 -39.68 -0.40 -1.01 16 25 C -0.14 -1.26 10.06 -39.31 -0.40 -1.66 16 26 C 0.11 1.18 7.04 -38.96 -0.27 0.91 16 27 O -0.27 -3.57 10.39 -39.25 -0.41 -3.97 16 28 C 0.12 2.20 5.92 -2.54 -0.02 2.19 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 31 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 32 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.36 4.21 8.16 45.56 0.37 4.58 16 35 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 3.39 7.30 -40.82 -0.30 3.09 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.81 7.92 -51.93 -0.41 0.40 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 42 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 45 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -35.51 371.56 -9.96 -45.47 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.71 Total: 4.30 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.42 Total: -0.12 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.32 Total: -49.85 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.10 Total: -22.18 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.51 -9.96 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716922413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.862 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds