Wall clock time and date at job start Tue Mar 31 2020 16:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.53007 * 109.47394 * 120.00084 * 2 1 3 5 5 N 1.46494 * 109.47213 * 174.99765 * 4 2 1 6 6 C 1.34774 * 119.99777 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00262 * 354.92264 * 6 5 4 8 8 C 1.50707 * 119.99788 * 174.91824 * 6 5 4 9 9 C 1.53001 * 115.55078 * 65.37990 * 8 6 5 10 10 C 1.53003 * 109.46867 * 65.27106 * 9 8 6 11 11 F 1.39906 * 109.46710 * 174.98157 * 10 9 8 12 12 C 1.52995 * 117.49865 * 279.70806 * 8 6 5 13 13 C 1.52999 * 117.49549 * 211.04859 * 8 6 5 14 14 N 1.46505 * 109.47296 * 240.00202 * 2 1 3 15 15 C 1.34774 * 120.00417 * 84.99854 * 14 2 1 16 16 O 1.21281 * 119.99605 * 359.97438 * 15 14 2 17 17 C 1.50696 * 120.00473 * 180.02562 * 15 14 2 18 18 S 1.80995 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99860 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00118 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99941 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00029 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00051 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46716 * 59.99959 * 23 21 19 25 25 H 1.48502 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47247 * 300.00198 * 23 21 19 27 27 H 1.08996 * 109.46668 * 299.99821 * 1 2 3 28 28 H 1.09002 * 109.47005 * 60.00346 * 1 2 3 29 29 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46646 * 295.00396 * 4 2 1 31 31 H 1.08996 * 109.46594 * 54.99778 * 4 2 1 32 32 H 0.97002 * 120.00414 * 0.02562 * 5 4 2 33 33 H 1.08993 * 109.46980 * 185.27096 * 9 8 6 34 34 H 1.09001 * 109.47092 * 305.27036 * 9 8 6 35 35 H 1.08994 * 109.47049 * 294.97497 * 10 9 8 36 36 H 1.08999 * 109.46904 * 54.97912 * 10 9 8 37 37 H 1.09000 * 117.49979 * 0.02562 * 12 8 6 38 38 H 1.09005 * 117.49985 * 145.02525 * 12 8 6 39 39 H 1.09006 * 117.49886 * 214.97767 * 13 8 6 40 40 H 1.08995 * 117.50222 * 359.97438 * 13 8 6 41 41 H 0.97006 * 119.99651 * 265.00169 * 14 2 1 42 42 H 1.09000 * 109.46581 * 300.00313 * 17 15 14 43 43 H 1.09000 * 109.46882 * 59.99563 * 17 15 14 44 44 H 0.97002 * 119.99853 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5813 -1.8006 3.1820 8 6 5.6611 -1.6388 2.0785 9 6 6.5075 -0.3646 2.0493 10 6 6.3831 0.3611 3.3905 11 9 7.2444 1.4635 3.4058 12 6 6.1454 -2.8278 1.2463 13 6 6.2554 -2.8660 2.7726 14 7 2.0184 -0.6906 -1.1962 15 6 2.1471 -0.0183 -2.3572 16 8 1.8582 1.1583 -2.4117 17 6 2.6489 -0.7288 -3.5878 18 16 2.7092 0.4341 -4.9734 19 6 3.3126 -0.6311 -6.2407 20 1 3.5220 -1.6675 -6.0207 21 6 3.5189 -0.1381 -7.5218 22 7 3.2642 1.1252 -7.7898 23 14 4.1592 -1.2672 -8.8651 24 1 3.2087 -2.3911 -9.0618 25 1 4.2914 -0.5038 -10.1320 26 1 5.4859 -1.8045 -8.4695 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7516 -0.1583 2.1370 31 1 1.6054 -1.7198 1.2951 32 1 3.9825 -0.4622 0.4319 33 1 7.5510 -0.6255 1.8728 34 1 6.1557 0.2870 1.2495 35 1 5.3562 0.7005 3.5260 36 1 6.6503 -0.3201 4.1983 37 1 5.3878 -3.4576 0.7799 38 1 7.0673 -2.7025 0.6783 39 1 7.2497 -2.7657 3.2081 40 1 5.5704 -3.5208 3.3110 41 1 2.2491 -1.6318 -1.1526 42 1 3.6480 -1.1213 -3.3985 43 1 1.9761 -1.5506 -3.8326 44 1 3.4080 1.4695 -8.6851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721933481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:13 Heat of formation + Delta-G solvation = -116.640321 kcal Electronic energy + Delta-G solvation = -25951.302536 eV Core-core repulsion = 21944.511934 eV Total energy + Delta-G solvation = -4006.790602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.90702 -40.65253 -39.48461 -37.48049 -36.32087 -33.89687 -32.47380 -31.71546 -31.46783 -28.67930 -27.16588 -25.53070 -24.47413 -23.18551 -22.65460 -21.84892 -20.44665 -19.81206 -17.98759 -17.48668 -16.76895 -16.63458 -16.45284 -16.34923 -15.89903 -15.33902 -15.12020 -14.99557 -14.85080 -14.84302 -14.27928 -14.09727 -13.40604 -13.26349 -13.18128 -13.01747 -12.82508 -12.70439 -12.61102 -12.12920 -12.01944 -11.97377 -11.88146 -11.25102 -11.20696 -11.09292 -11.07497 -10.94708 -10.80854 -10.51134 -10.10806 -9.87525 -9.55785 -9.41176 -9.12698 -9.06706 -8.30147 -6.55628 -6.26120 -3.97328 2.18221 2.66015 2.93364 2.98422 3.18224 3.20026 3.24168 3.26862 3.61610 3.93479 4.16032 4.22562 4.27423 4.30915 4.36932 4.54358 4.68366 4.74421 4.83505 4.98817 5.02578 5.08652 5.09533 5.20636 5.27846 5.33834 5.34497 5.44135 5.47943 5.50067 5.59201 5.62756 5.67779 5.80078 5.86141 5.96665 6.06181 6.12710 6.49584 7.11340 7.54310 7.56755 7.83148 8.30251 8.48952 9.19204 10.81180 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002630 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.809601 B =10642.882576 C =11637.312099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.723 5.723 6 C 0.550 3.450 7 O -0.536 6.536 8 C -0.165 4.165 9 C -0.110 4.110 10 C 0.063 3.937 11 F -0.217 7.217 12 C -0.150 4.150 13 C -0.143 4.143 14 N -0.738 5.738 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -7.807 21.953 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.375 5.375 6 C 0.336 3.664 7 O -0.412 6.412 8 C -0.168 4.168 9 C -0.148 4.148 10 C 0.008 3.992 11 F -0.198 7.198 12 C -0.187 4.187 13 C -0.180 4.180 14 N -0.393 5.393 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.243 0.757 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.566 -5.921 22.429 23.339 hybrid contribution 1.010 -2.306 -1.237 2.805 sum 3.576 -8.227 21.192 23.013 Atomic orbital electron populations 1.22115 0.94085 1.02551 1.03266 1.21142 0.95083 0.97900 0.83231 0.88636 1.21747 0.79708 1.01628 0.98103 1.45968 1.07752 1.59725 1.24052 1.19477 0.87502 0.77009 0.82417 1.90713 1.69789 1.50518 1.30217 1.21320 0.92282 0.92441 1.10763 1.21665 1.00643 0.94307 0.98173 1.21936 0.93253 0.85289 0.98712 1.92784 1.72843 1.56416 1.97756 1.23142 1.03475 0.97659 0.94419 1.23059 1.02310 0.97467 0.95204 1.46154 1.69639 1.14006 1.09502 1.20346 0.76795 0.87235 0.83690 1.90716 1.47965 1.15739 1.84260 1.23539 1.03633 1.04942 0.98380 1.85407 1.86345 1.12706 0.98718 1.22818 1.51195 0.98130 0.96422 0.90989 1.24989 0.95043 0.95531 0.97947 1.70003 1.45372 1.13208 1.21659 0.86231 0.79322 0.80021 0.79970 1.19937 1.20788 1.19912 0.91497 0.90975 0.92199 0.89852 0.90751 0.75738 0.89274 0.89711 0.90914 0.90341 0.87961 0.87326 0.87679 0.87581 0.76773 0.89258 0.89232 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.13 1.29 2.73 -67.92 -0.19 1.10 16 3 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.11 0.93 5.24 -4.04 -0.02 0.90 16 5 N -0.72 -6.06 5.38 -60.29 -0.32 -6.38 16 6 C 0.55 5.28 6.57 -10.98 -0.07 5.20 16 7 O -0.54 -6.88 16.70 5.56 0.09 -6.79 16 8 C -0.16 -1.22 1.90 -155.66 -0.30 -1.51 16 9 C -0.11 -0.77 5.54 -26.73 -0.15 -0.92 16 10 C 0.06 0.50 7.36 37.16 0.27 0.77 16 11 F -0.22 -2.26 17.36 2.25 0.04 -2.22 16 12 C -0.15 -0.93 9.93 -26.70 -0.26 -1.20 16 13 C -0.14 -0.93 9.78 -26.69 -0.26 -1.19 16 14 N -0.74 -8.22 4.52 -53.80 -0.24 -8.46 16 15 C 0.53 8.85 7.81 -10.99 -0.09 8.76 16 16 O -0.51 -10.62 15.52 5.56 0.09 -10.54 16 17 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 18 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 19 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 20 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 23 Si 0.92 20.92 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 3.26 8.14 -40.82 -0.33 2.93 16 33 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.79 7.99 -51.93 -0.42 0.38 16 41 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 42 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 43 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -34.74 393.74 -8.14 -42.89 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.94 Total: 2.80 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.29 Total: -4.48 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.17 Total: -39.76 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.18 Total: -17.33 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.74 -8.14 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721933481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.754 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds