Wall clock time and date at job start Tue Mar 31 2020 16:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.53007 * 109.47394 * 120.00084 * 2 1 3 5 5 N 1.46494 * 109.47213 * 174.99765 * 4 2 1 6 6 C 1.34774 * 119.99777 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00262 * 354.92264 * 6 5 4 8 8 C 1.50707 * 119.99788 * 174.91824 * 6 5 4 9 9 C 1.53001 * 115.55078 * 65.37990 * 8 6 5 10 10 C 1.53003 * 109.46867 * 65.27106 * 9 8 6 11 11 F 1.39906 * 109.46710 * 174.98157 * 10 9 8 12 12 C 1.52995 * 117.49865 * 279.70806 * 8 6 5 13 13 C 1.52999 * 117.49549 * 211.04859 * 8 6 5 14 14 N 1.46505 * 109.47296 * 240.00202 * 2 1 3 15 15 C 1.34774 * 120.00417 * 84.99854 * 14 2 1 16 16 O 1.21281 * 119.99605 * 359.97438 * 15 14 2 17 17 C 1.50696 * 120.00473 * 180.02562 * 15 14 2 18 18 S 1.80995 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99860 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00118 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99941 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00029 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00051 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46716 * 59.99959 * 23 21 19 25 25 H 1.48502 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47247 * 300.00198 * 23 21 19 27 27 H 1.08996 * 109.46668 * 299.99821 * 1 2 3 28 28 H 1.09002 * 109.47005 * 60.00346 * 1 2 3 29 29 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46646 * 295.00396 * 4 2 1 31 31 H 1.08996 * 109.46594 * 54.99778 * 4 2 1 32 32 H 0.97002 * 120.00414 * 0.02562 * 5 4 2 33 33 H 1.08993 * 109.46980 * 185.27096 * 9 8 6 34 34 H 1.09001 * 109.47092 * 305.27036 * 9 8 6 35 35 H 1.08994 * 109.47049 * 294.97497 * 10 9 8 36 36 H 1.08999 * 109.46904 * 54.97912 * 10 9 8 37 37 H 1.09000 * 117.49979 * 0.02562 * 12 8 6 38 38 H 1.09005 * 117.49985 * 145.02525 * 12 8 6 39 39 H 1.09006 * 117.49886 * 214.97767 * 13 8 6 40 40 H 1.08995 * 117.50222 * 359.97438 * 13 8 6 41 41 H 0.97006 * 119.99651 * 265.00169 * 14 2 1 42 42 H 1.09000 * 109.46581 * 300.00313 * 17 15 14 43 43 H 1.09000 * 109.46882 * 59.99563 * 17 15 14 44 44 H 0.97002 * 119.99853 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5813 -1.8006 3.1820 8 6 5.6611 -1.6388 2.0785 9 6 6.5075 -0.3646 2.0493 10 6 6.3831 0.3611 3.3905 11 9 7.2444 1.4635 3.4058 12 6 6.1454 -2.8278 1.2463 13 6 6.2554 -2.8660 2.7726 14 7 2.0184 -0.6906 -1.1962 15 6 2.1471 -0.0183 -2.3572 16 8 1.8582 1.1583 -2.4117 17 6 2.6489 -0.7288 -3.5878 18 16 2.7092 0.4341 -4.9734 19 6 3.3126 -0.6311 -6.2407 20 1 3.5220 -1.6675 -6.0207 21 6 3.5189 -0.1381 -7.5218 22 7 3.2642 1.1252 -7.7898 23 14 4.1592 -1.2672 -8.8651 24 1 3.2087 -2.3911 -9.0618 25 1 4.2914 -0.5038 -10.1320 26 1 5.4859 -1.8045 -8.4695 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7516 -0.1583 2.1370 31 1 1.6054 -1.7198 1.2951 32 1 3.9825 -0.4622 0.4319 33 1 7.5510 -0.6255 1.8728 34 1 6.1557 0.2870 1.2495 35 1 5.3562 0.7005 3.5260 36 1 6.6503 -0.3201 4.1983 37 1 5.3878 -3.4576 0.7799 38 1 7.0673 -2.7025 0.6783 39 1 7.2497 -2.7657 3.2081 40 1 5.5704 -3.5208 3.3110 41 1 2.2491 -1.6318 -1.1526 42 1 3.6480 -1.1213 -3.3985 43 1 1.9761 -1.5506 -3.8326 44 1 3.4080 1.4695 -8.6851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721933481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:12 Heat of formation + Delta-G solvation = -140.688057 kcal Electronic energy + Delta-G solvation = -25952.345324 eV Core-core repulsion = 21944.511934 eV Total energy + Delta-G solvation = -4007.833390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.64345 -41.41389 -40.66824 -38.19116 -37.28109 -34.83149 -34.56501 -32.68325 -32.18732 -30.02948 -27.90278 -27.63724 -25.10796 -23.81669 -23.21558 -22.78075 -21.62264 -20.53965 -19.81984 -18.25716 -17.92268 -17.55886 -17.22256 -17.11581 -16.86272 -16.72280 -16.35986 -16.17208 -15.98925 -15.70148 -15.53596 -14.88701 -14.71369 -14.58283 -14.06720 -14.00791 -13.78176 -13.61037 -13.37671 -13.26767 -13.14950 -12.99368 -12.85473 -12.61310 -12.59756 -12.42856 -12.08443 -11.83753 -11.72591 -11.51621 -11.11483 -11.08083 -10.93771 -10.83278 -10.25125 -10.21745 -10.17577 -8.64058 -8.33242 -6.10567 1.28209 1.44604 1.45514 1.48310 1.57231 1.62388 1.99338 2.26118 2.30842 2.63758 3.01123 3.33543 3.38121 3.53574 3.63912 3.71812 3.76600 3.96935 3.98896 4.03067 4.12195 4.15661 4.24116 4.34934 4.45862 4.53868 4.56304 4.66929 4.73611 4.74127 4.79509 4.91125 4.98735 4.98816 5.05924 5.20070 5.21317 5.35022 5.43258 5.46970 6.20950 6.39294 6.48386 7.08487 7.10272 7.24762 8.75459 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002630 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.809601 B =10642.882576 C =11637.312099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.079 0.921 4 C 0.121 3.879 5 N -0.718 5.718 6 C 0.551 3.449 7 O -0.571 6.571 8 C -0.172 4.172 9 C -0.104 4.104 10 C 0.060 3.940 11 F -0.232 7.232 12 C -0.140 4.140 13 C -0.142 4.142 14 N -0.710 5.710 15 C 0.539 3.461 16 O -0.560 6.560 17 C -0.131 4.131 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.995 3.005 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.261 1.261 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.415 0.585 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -10.332 22.588 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.369 5.369 6 C 0.337 3.663 7 O -0.450 6.450 8 C -0.175 4.175 9 C -0.142 4.142 10 C 0.005 3.995 11 F -0.213 7.213 12 C -0.177 4.177 13 C -0.179 4.179 14 N -0.365 5.365 15 C 0.325 3.675 16 O -0.437 6.437 17 C -0.282 4.282 18 S 0.078 5.922 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.817 3.183 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.185 1.185 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.252 0.748 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.488 -8.487 23.094 24.850 hybrid contribution 0.673 -1.547 -1.282 2.119 sum 4.160 -10.034 21.812 24.367 Atomic orbital electron populations 1.22079 0.93396 1.03412 1.02799 1.21178 0.95532 0.97133 0.82905 0.90282 1.21671 0.79691 1.01938 0.97002 1.45967 1.07825 1.59223 1.23926 1.19821 0.88367 0.76241 0.81822 1.90699 1.70705 1.52106 1.31501 1.21256 0.90831 0.93046 1.12384 1.21621 1.01345 0.93904 0.97329 1.22062 0.92570 0.84988 0.99905 1.92752 1.73307 1.57383 1.97875 1.23231 1.03866 0.96258 0.94322 1.23121 1.02756 0.96435 0.95563 1.45848 1.67817 1.14533 1.08271 1.19997 0.76569 0.86516 0.84433 1.90713 1.50305 1.17700 1.84999 1.23381 1.05649 1.03145 0.96023 1.85583 1.86711 1.17141 1.02781 1.23177 1.50823 0.98519 0.96897 0.89883 1.26095 0.95122 0.97112 1.00739 1.70174 1.46881 1.15463 1.22275 0.85046 0.79154 0.77784 0.76286 1.18771 1.20617 1.18524 0.89535 0.93908 0.90650 0.89418 0.89705 0.75370 0.87897 0.90063 0.91630 0.89124 0.87999 0.85883 0.85988 0.88736 0.74833 0.86928 0.87497 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.48 2.73 44.99 0.12 2.61 16 3 H 0.08 1.78 7.58 -2.38 -0.02 1.76 16 4 C 0.12 1.75 5.24 86.38 0.45 2.20 16 5 N -0.72 -10.76 5.38 -463.07 -2.49 -13.25 16 6 C 0.55 9.72 6.57 87.66 0.58 10.29 16 7 O -0.57 -14.02 16.70 -3.01 -0.05 -14.07 16 8 C -0.17 -2.21 1.90 -52.93 -0.10 -2.31 16 9 C -0.10 -1.28 5.54 30.60 0.17 -1.11 16 10 C 0.06 0.88 7.36 71.98 0.53 1.41 16 11 F -0.23 -4.67 17.36 44.97 0.78 -3.89 16 12 C -0.14 -1.37 9.93 30.62 0.30 -1.07 16 13 C -0.14 -1.55 9.78 30.62 0.30 -1.25 16 14 N -0.71 -14.48 4.52 -442.51 -2.00 -16.48 16 15 C 0.54 17.46 7.81 87.66 0.68 18.15 16 16 O -0.56 -23.58 15.52 -3.03 -0.05 -23.63 16 17 C -0.13 -4.71 6.16 71.23 0.44 -4.27 16 18 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 19 C -0.55 -30.14 9.50 67.96 0.65 -29.50 16 20 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 23 Si 1.00 42.43 29.55 68.60 2.03 44.46 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.41 5.81 8.14 -92.71 -0.75 5.06 16 33 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.09 1.29 7.99 -2.39 -0.02 1.27 16 41 H 0.41 6.04 8.60 -92.70 -0.80 5.25 16 42 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.68 393.74 2.08 -75.60 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.53 Total: 20.69 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.27 Total: -5.67 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -4.21 Total: -84.42 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.10 Total: -37.69 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -77.68 2.08 -75.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721933481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.086 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds