Wall clock time and date at job start Tue Mar 31 2020 16:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99952 * 2 1 4 4 C 1.52998 * 109.46921 * 269.99746 * 3 2 1 5 5 N 1.46503 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00194 * 180.02562 * 5 4 3 7 7 O 1.21274 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99893 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47146 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00045 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00215 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99878 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99969 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99965 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46525 * 90.00624 * 14 12 10 16 16 H 1.48501 * 109.47057 * 209.99892 * 14 12 10 17 17 H 1.48489 * 109.47389 * 330.00707 * 14 12 10 18 18 C 1.34780 * 120.00052 * 179.97438 * 2 1 3 19 19 O 1.21282 * 119.99861 * 184.79264 * 18 2 1 20 20 C 1.50692 * 119.99634 * 4.52682 * 18 2 1 21 21 C 1.53008 * 115.54983 * 293.61779 * 20 18 2 22 22 C 1.52999 * 109.46779 * 303.80280 * 21 20 18 23 23 F 1.39907 * 109.46902 * 175.63908 * 22 21 20 24 24 C 1.53004 * 117.50106 * 147.95148 * 20 18 2 25 25 C 1.53001 * 117.50256 * 79.29101 * 20 18 2 26 26 H 1.09003 * 109.47280 * 273.54234 * 1 2 3 27 27 H 1.09001 * 109.47505 * 33.53564 * 1 2 3 28 28 H 1.08997 * 109.47063 * 153.53883 * 1 2 3 29 29 H 1.09000 * 109.47470 * 29.99580 * 3 2 1 30 30 H 1.09004 * 109.47178 * 150.00129 * 3 2 1 31 31 H 1.09003 * 109.47415 * 300.00198 * 4 3 2 32 32 H 1.09004 * 109.46881 * 60.00202 * 4 3 2 33 33 H 0.96998 * 119.99656 * 0.02562 * 5 4 3 34 34 H 1.09003 * 109.47160 * 300.00265 * 8 6 5 35 35 H 1.08995 * 109.47302 * 60.00004 * 8 6 5 36 36 H 0.96993 * 120.00065 * 179.97438 * 13 12 10 37 37 H 1.08994 * 109.46817 * 63.80189 * 21 20 18 38 38 H 1.09000 * 109.47008 * 183.80483 * 21 20 18 39 39 H 1.08996 * 109.47479 * 295.63439 * 22 21 20 40 40 H 1.08999 * 109.47623 * 55.63826 * 22 21 20 41 41 H 1.09001 * 117.49103 * 359.97438 * 24 20 18 42 42 H 1.09005 * 117.49849 * 145.01456 * 24 20 18 43 43 H 1.09001 * 117.49623 * 214.97465 * 25 20 18 44 44 H 1.08994 * 117.49800 * 359.97121 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1845 2.9794 -1.4426 6 6 3.5209 3.5633 -2.6098 7 8 3.2173 3.0383 -3.6601 8 6 4.2743 4.8684 -2.6098 9 16 4.5746 5.3917 -4.3163 10 6 5.4431 6.8971 -4.0264 11 1 5.6333 7.2246 -3.0150 12 6 5.8827 7.6621 -5.0979 13 7 6.5319 8.7865 -4.8814 14 14 5.5542 7.0952 -6.8473 15 1 4.2541 7.6442 -7.3094 16 1 6.6402 7.5796 -7.7367 17 1 5.5070 5.6116 -6.8863 18 6 2.1389 -1.1672 0.0005 19 8 3.3485 -1.1690 0.0883 20 6 1.3889 -2.4702 -0.1019 21 6 0.4958 -2.8132 1.0922 22 6 1.3337 -2.8131 2.3723 23 9 0.5003 -3.0284 3.4752 24 6 2.0811 -3.6291 -0.8222 25 6 0.9103 -2.9028 -1.4893 26 1 -0.3634 0.0635 1.0257 27 1 -0.3634 0.8566 -0.5677 28 1 -0.3633 -0.9200 -0.4579 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.0416 0.9507 -1.9563 32 1 1.5000 1.8407 -1.9563 33 1 3.4270 3.3994 -0.6026 34 1 3.6854 5.6279 -2.0955 35 1 5.2269 4.7380 -2.0965 36 1 6.8395 9.3209 -5.6301 37 1 -0.2978 -2.0710 1.1773 38 1 0.0563 -3.7999 0.9457 39 1 2.0784 -3.6073 2.3193 40 1 1.8353 -1.8513 2.4783 41 1 3.0788 -3.4488 -1.2223 42 1 1.9000 -4.6359 -0.4456 43 1 -0.0405 -3.4321 -1.5512 44 1 1.1376 -2.2447 -2.3278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737710570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:20 Heat of formation + Delta-G solvation = -127.326117 kcal Electronic energy + Delta-G solvation = -25652.831050 eV Core-core repulsion = 21645.577077 eV Total energy + Delta-G solvation = -4007.253973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.63704 -41.61014 -40.66281 -38.19104 -37.19345 -35.62112 -34.67953 -32.37990 -31.86529 -29.77050 -27.87838 -27.66345 -25.71815 -24.39152 -23.43637 -22.61500 -21.93095 -20.01180 -19.68501 -18.08724 -17.92756 -17.68266 -17.32993 -17.15353 -17.04817 -16.82510 -16.76835 -16.16057 -15.83590 -15.63423 -15.45072 -15.13797 -14.98016 -14.81775 -14.61702 -14.03528 -13.81431 -13.69781 -13.41345 -13.36256 -13.19308 -13.12902 -13.02190 -12.66922 -12.55851 -12.50280 -12.34872 -11.88393 -11.84933 -11.53016 -11.17939 -11.17004 -11.05013 -10.80581 -10.55401 -10.25523 -9.85924 -9.01297 -8.52369 -6.23475 0.95663 1.30392 1.35439 1.45464 1.50309 1.52325 1.74256 2.23701 2.34269 2.59637 2.71471 2.85699 3.29407 3.44549 3.68838 3.71615 3.75866 3.88220 3.91591 3.93345 4.09955 4.15599 4.21610 4.28304 4.33147 4.45200 4.46141 4.63401 4.65191 4.70382 4.76822 4.83245 4.90329 4.92619 4.97202 5.08493 5.16879 5.22089 5.42841 5.69993 6.10781 6.22069 6.38402 6.92680 7.00408 7.12411 8.59914 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.001926 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.744502 B =14534.400247 C =14942.927075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.110 3.890 4 C 0.115 3.885 5 N -0.709 5.709 6 C 0.536 3.464 7 O -0.563 6.563 8 C -0.111 4.111 9 S -0.177 6.177 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.044 3.956 13 N -0.916 5.916 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.259 1.259 17 H -0.239 1.239 18 C 0.541 3.459 19 O -0.576 6.576 20 C -0.165 4.165 21 C -0.102 4.102 22 C 0.059 3.941 23 F -0.228 7.228 24 C -0.151 4.151 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.420 0.580 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.277 0.723 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 -26.099 15.682 35.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.338 5.338 3 C -0.014 4.014 4 C -0.011 4.011 5 N -0.364 5.364 6 C 0.322 3.678 7 O -0.442 6.442 8 C -0.261 4.261 9 S 0.049 5.951 10 C -0.676 4.676 11 H 0.082 0.918 12 C -0.161 4.161 13 N -0.554 5.554 14 Si 0.737 3.263 15 H -0.185 1.185 16 H -0.184 1.184 17 H -0.163 1.163 18 C 0.330 3.670 19 O -0.455 6.455 20 C -0.168 4.168 21 C -0.140 4.140 22 C 0.004 3.996 23 F -0.209 7.209 24 C -0.188 4.188 25 C -0.174 4.174 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.132 -26.810 13.991 35.260 hybrid contribution 1.058 1.375 0.836 1.926 sum -17.074 -25.435 14.827 34.034 Atomic orbital electron populations 1.22284 0.76574 1.05174 1.03681 1.47755 1.08721 1.04689 1.72635 1.21564 0.99309 0.86175 0.94356 1.21591 0.96296 0.84502 0.98675 1.45524 1.58557 1.23956 1.08363 1.19994 0.78527 0.85431 0.83892 1.90690 1.55218 1.65394 1.32857 1.23262 1.04301 0.97725 1.00855 1.84731 1.74150 1.27546 1.08666 1.22452 1.41457 1.07017 0.96676 0.91831 1.25576 0.93295 0.94030 1.03194 1.70013 1.37455 1.14012 1.33905 0.85859 0.79353 0.81422 0.79688 1.18524 1.18364 1.16250 1.20188 0.86792 0.85407 0.74624 1.90722 1.16120 1.87799 1.50882 1.21228 1.04719 0.93543 0.97308 1.21756 0.96988 1.05694 0.89520 1.22012 0.92084 1.02924 0.82542 1.92755 1.74839 1.96652 1.56687 1.23159 0.97549 0.96421 1.01701 1.23225 1.00566 1.02167 0.91453 0.90344 0.89691 0.88869 0.86085 0.90046 0.94398 0.91085 0.74291 0.86274 0.86859 0.91356 0.88117 0.87354 0.89888 0.92232 0.90089 0.85354 0.84429 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 9.11 127.77 1.16 1.54 16 2 N -0.61 -8.17 2.87 -846.76 -2.43 -10.60 16 3 C 0.11 1.58 5.58 86.38 0.48 2.06 16 4 C 0.11 2.44 6.00 86.38 0.52 2.96 16 5 N -0.71 -16.53 5.56 -463.05 -2.57 -19.11 16 6 C 0.54 18.46 7.85 87.66 0.69 19.15 16 7 O -0.56 -24.41 15.86 -3.01 -0.05 -24.46 16 8 C -0.11 -4.12 6.16 71.24 0.44 -3.69 16 9 S -0.18 -9.00 18.55 -56.49 -1.05 -10.04 16 10 C -0.53 -30.79 10.04 67.96 0.68 -30.11 16 11 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 12 C 0.04 2.62 5.50 84.86 0.47 3.09 16 13 N -0.92 -55.82 13.97 21.65 0.30 -55.52 16 14 Si 0.91 45.17 27.74 68.60 1.90 47.07 16 15 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 18 C 0.54 9.80 5.86 87.65 0.51 10.31 16 19 O -0.58 -15.87 16.28 -3.04 -0.05 -15.92 16 20 C -0.16 -1.80 0.89 -52.93 -0.05 -1.85 16 21 C -0.10 -0.69 5.25 30.60 0.16 -0.53 16 22 C 0.06 0.67 7.40 71.98 0.53 1.20 16 23 F -0.23 -3.45 17.36 44.97 0.78 -2.67 16 24 C -0.15 -1.67 9.75 30.62 0.30 -1.37 16 25 C -0.14 -1.11 9.17 30.62 0.28 -0.83 16 26 H 0.08 0.24 7.79 -2.39 -0.02 0.22 16 27 H 0.08 0.39 8.10 -2.39 -0.02 0.37 16 28 H 0.09 0.34 5.37 -2.39 -0.01 0.33 16 29 H 0.12 0.97 8.07 -2.39 -0.02 0.95 16 30 H 0.08 1.43 7.36 -2.39 -0.02 1.41 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.42 6.71 8.47 -92.71 -0.79 5.93 16 34 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 36 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.10 0.42 5.83 -2.39 -0.01 0.41 16 38 H 0.11 0.35 8.10 -2.39 -0.02 0.33 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.82 7.30 -2.39 -0.02 0.80 16 41 H 0.08 1.34 8.02 -2.39 -0.02 1.32 16 42 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -82.70 383.57 3.21 -79.49 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.19 Total: 9.82 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.18 Total: 1.95 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -4.70 Total: -85.23 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.04 kcal Total: -82.70 3.21 -79.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737710570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.834 kcal (2) G-P(sol) polarization free energy of solvation -82.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds